mRNA_P-fluviatile_contig17.2916.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.2916.1
Unique NamemRNA_P-fluviatile_contig17.2916.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig17.2916.1 vs. uniprot
Match: A0A6H5KZS0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZS0_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 3.040e-26
Identity = 161/403 (39.95%), Postives = 197/403 (48.88%), Query Frame = 1 
Query:    1 MQHEETMNIGTAPIWTLSGVPRRKDGLSGDVDSNRGTMTITGGGG---IGATANSTA-LPAE----------CAPDSIGGEPRQPRSGE--LNGGDEEDIADNVDGFLDDFMALAGAYSDFVDGAAGTDFMVDEDLGGGGDDGGDL-ERILAGMEDADLADFGPPLAGSDDGAG---------VDMAPLPYVQEVVPPKXXXXXXXXXXXXXXXXXXXXIVASSPASAPAHVAFAAACVMSPVEVDGTAASPPACGDISSAGGLLAPDAAASSAPAAELGKGVAISGDGVGAAA--------------------GSXVEVAAGVGHKEQLRRQRVARYLAKKKNRCWSKPSQYQSRQRVANSRPRHRGRFLPLESEFISITELQQRQRAQMKQMQEKAAALAA 1071
            M  +ET+    AP    SG  R    L G VDS+R  +   G  G   +GA   STA +PA              ++  GE +Q  S +  LN   E DIADNVDGFLD+F+ALAG      D   G   M++E   G G  G  + E  LA + D DLADF P  AGS  GA             +P    +  + P      XXXXXXXXXXXXXXX            V      + SPV   G   S    GD+S    +     AA++  A E+     ++ DG                         G   +  A V  KEQ+RRQ+VARYLAKK+ R WSK S YQSRQRVANSRPRH+GRFLPLESEF+ I E+Q+RQR  M QM+EKAAA  A
Sbjct:    1 MHDDETIINMYAPFRACSGAHRP---LKGTVDSSRRKINAGGNNGNSEVGAGGGSTATVPAAGTLCKNKNSIIITENESGENKQLDSMDVGLNVSGEGDIADNVDGFLDEFIALAG------DDDYGDSMMLEEGCEGEG--GAAISEEGLAYLADMDLADFLP--AGSAKGASNAGTGXXXXAPRSPSSDHEIEILPDIVAGGXXXXXXXXXXXXXXXXXXXXXXXXXGGV------MGSPVAGGGAEVS--GVGDVSPIRSV-----AAAAVAAVEVVAAPGVNADGXXXXXXXXXXXXXXXXXXXXXXDWDGGDDDADAIVSLKEQVRRQKVARYLAKKQRRRWSKASCYQSRQRVANSRPRHKGRFLPLESEFVPIAEVQRRQRVLMAQMREKAAAATA 377
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BLAST of mRNA_P-fluviatile_contig17.2916.1 vs. uniprot
Match: A0A6H5KKD0_9PHAE (CCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKD0_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 1.180e-24
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:  841 KEQLRRQRVARYLAKKKNRCWSKP--SQYQSRQRVANSRPRHRGRFLPLESEFISITELQQRQRAQMKQMQEKAAALAA 1071
            KEQ+RRQ+VARYLAKK+ RCWSKP  S YQSRQRVANSRPRH+GRFLPLESEF+ I ELQ+RQRA M QM+EKAAA AA
Sbjct:  254 KEQVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAASAA 332
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BLAST of mRNA_P-fluviatile_contig17.2916.1 vs. uniprot
Match: D8LIC1_ECTSI (CCT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC1_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.110e-24
Identity = 62/78 (79.49%), Postives = 69/78 (88.46%), Query Frame = 1 
Query:  841 KEQLRRQRVARYLAKKKNRCWSKP--SQYQSRQRVANSRPRHRGRFLPLESEFISITELQQRQRAQMKQMQEKAAALA 1068
            KEQ+RRQ+VARYLAKK+ RCWSKP  S YQSRQRVANSRPRH+GRFLPLESEF+ I ELQ+RQRA M QM+EKAAA A
Sbjct:  253 KEQVRRQKVARYLAKKQRRCWSKPAASSYQSRQRVANSRPRHKGRFLPLESEFVPIAELQRRQRALMVQMREKAAAAA 330
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BLAST of mRNA_P-fluviatile_contig17.2916.1 vs. uniprot
Match: D7G0D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0D0_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.230e-6
Identity = 43/95 (45.26%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:  226 LNGGDEEDIADNVDGFLDDFMALAGAYSDFVDGAAGTDFMVDEDLGGGGDDGGDL-ERILAGMEDADLADF-------GPPLAGSDDGAGVDMAP 486
            LN   E DIADNVDGFLD+F+ALAG      D   G   M++E   GGG  G  + E  LA + D DLADF       G P AG+  G G  ++P
Sbjct:   92 LNVSGEGDIADNVDGFLDEFIALAG------DDDYGDSMMLEEGCEGGG--GAAISEEDLAYLADMDLADFLPAGAAEGAPEAGTSAGGGAPLSP 178
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.2916.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KZS0_9PHAE3.040e-2639.95CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KKD0_9PHAE1.180e-2479.75CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LIC1_ECTSI2.110e-2479.49CCT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0D0_ECTSI6.230e-645.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:264805..265875 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1071
Cds size1071
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.8351-CDS-P-fluviatile_contig17:264804..2658751622815721.8351-CDS-P-fluviatile_contig17:264804..265875Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 264805..265875 +
1693563027.8386824-CDS-P-fluviatile_contig17:264804..2658751693563027.8386824-CDS-P-fluviatile_contig17:264804..265875Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 264805..265875 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.2916.1prot_P-fluviatile_contig17.2916.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 264805..265875 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.2916.1

>prot_P-fluviatile_contig17.2916.1 ID=prot_P-fluviatile_contig17.2916.1|Name=mRNA_P-fluviatile_contig17.2916.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=357bp
MQHEETMNIGTAPIWTLSGVPRRKDGLSGDVDSNRGTMTITGGGGIGATA
NSTALPAECAPDSIGGEPRQPRSGELNGGDEEDIADNVDGFLDDFMALAG
AYSDFVDGAAGTDFMVDEDLGGGGDDGGDLERILAGMEDADLADFGPPLA
GSDDGAGVDMAPLPYVQEVVPPKAAAVVVDGDEDEDIAAATPVIVASSPA
SAPAHVAFAAACVMSPVEVDGTAASPPACGDISSAGGLLAPDAAASSAPA
AELGKGVAISGDGVGAAAGSGVEVAAGVGHKEQLRRQRVARYLAKKKNRC
WSKPSQYQSRQRVANSRPRHRGRFLPLESEFISITELQQRQRAQMKQMQE
KAAALAA
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mRNA from alignment at P-fluviatile_contig17:264805..265875+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.2916.1 ID=mRNA_P-fluviatile_contig17.2916.1|Name=mRNA_P-fluviatile_contig17.2916.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1071bp|location=Sequence derived from alignment at P-fluviatile_contig17:264805..265875+ (Porterinema fluviatile SAG_2381)
ATGCAACACGAAGAGACCATGAATATCGGCACCGCCCCCATCTGGACCCT
GTCCGGTGTGCCCCGCCGCAAGGATGGCCTTAGCGGCGATGTGGACAGCA
ACAGGGGCACGATGACCATCACCGGCGGCGGCGGCATTGGCGCTACGGCA
AACAGCACCGCTCTTCCAGCCGAGTGCGCGCCTGACAGCATTGGGGGCGA
GCCCCGGCAGCCGCGTAGCGGGGAGCTTAACGGTGGCGATGAGGAGGACA
TCGCCGACAACGTGGACGGGTTCCTCGACGACTTCATGGCGCTCGCCGGC
GCTTACTCCGACTTCGTCGACGGCGCCGCGGGGACGGATTTTATGGTGGA
CGAGGACCTTGGCGGCGGCGGTGACGATGGGGGTGATTTGGAGAGGATCC
TGGCCGGGATGGAGGACGCAGACCTGGCGGACTTCGGGCCTCCGCTCGCG
GGCTCGGACGACGGCGCCGGCGTGGACATGGCGCCGTTACCCTATGTCCA
GGAAGTCGTGCCGCCGAAGGCTGCTGCGGTGGTCGTCGACGGGGACGAGG
ACGAGGACATTGCAGCGGCAACACCTGTGATTGTTGCTTCCTCTCCTGCC
TCTGCTCCCGCCCATGTTGCTTTTGCAGCTGCTTGTGTAATGTCCCCGGT
GGAGGTGGACGGCACGGCGGCATCGCCACCGGCATGTGGGGATATTTCGA
GCGCCGGGGGGCTGTTGGCCCCGGACGCGGCCGCTAGCTCGGCGCCGGCG
GCCGAGTTGGGCAAGGGAGTGGCGATCAGCGGGGACGGTGTAGGTGCCGC
GGCCGGCTCGGGGGTTGAGGTCGCGGCCGGGGTCGGCCACAAGGAGCAGC
TGCGGCGGCAGAGGGTGGCTCGCTACCTGGCTAAGAAGAAGAACCGCTGC
TGGTCGAAGCCGTCCCAGTACCAGAGCCGGCAGCGCGTAGCCAACTCCAG
GCCGCGGCACAGGGGACGCTTCCTGCCTTTAGAGTCGGAGTTCATCTCGA
TCACAGAGCTGCAGCAGCGGCAGCGGGCCCAAATGAAGCAGATGCAGGAG
AAGGCTGCGGCTTTGGCGGCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig17:264805..265875+

>mRNA_P-fluviatile_contig17.2916.1 ID=mRNA_P-fluviatile_contig17.2916.1|Name=mRNA_P-fluviatile_contig17.2916.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2142bp|location=Sequence derived from alignment at P-fluviatile_contig17:264805..265875+ (Porterinema fluviatile SAG_2381)
ATGCAACACGAAGAGACCATGAATATCGGCACCGCCCCCATCTGGACCCT
GTCCGGTGTGCCCCGCCGCAAGGATGGCCTTAGCGGCGATGTGGACAGCA
ACAGGGGCACGATGACCATCACCGGCGGCGGCGGCATTGGCGCTACGGCA
AACAGCACCGCTCTTCCAGCCGAGTGCGCGCCTGACAGCATTGGGGGCGA
GCCCCGGCAGCCGCGTAGCGGGGAGCTTAACGGTGGCGATGAGGAGGACA
TCGCCGACAACGTGGACGGGTTCCTCGACGACTTCATGGCGCTCGCCGGC
GCTTACTCCGACTTCGTCGACGGCGCCGCGGGGACGGATTTTATGGTGGA
CGAGGACCTTGGCGGCGGCGGTGACGATGGGGGTGATTTGGAGAGGATCC
TGGCCGGGATGGAGGACGCAGACCTGGCGGACTTCGGGCCTCCGCTCGCG
GGCTCGGACGACGGCGCCGGCGTGGACATGGCGCCGTTACCCTATGTCCA
GGAAGTCGTGCCGCCGAAGGCTGCTGCGGTGGTCGTCGACGGGGACGAGG
ACGAGGACATTGCAGCGGCAACACCTGTGATTGTTGCTTCCTCTCCTGCC
TCTGCTCCCGCCCATGTTGCTTTTGCAGCTGCTTGTGTAATGTCCCCGGT
GGAGGTGGACGGCACGGCGGCATCGCCACCGGCATGTGGGGATATTTCGA
GCGCCGGGGGGCTGTTGGCCCCGGACGCGGCCGCTAGCTCGGCGCCGGCG
GCCGAGTTGGGCAAGGGAGTGGCGATCAGCGGGGACGGTGTAGGTGCCGC
GGCCGGCTCGGGGGTTGAGGTCGCGGCCGGGGTCGGCCACAAGGAGCAGC
TGCGGCGGCAGAGGGTGGCTCGCTACCTGGCTAAGAAGAAGAACCGCTGC
TGGTCGAAGCCGTCCCAGTACCAGAGCCGGCAGCGCGTAGCCAACTCCAG
GCCGCGGCACAGGGGACGCTTCCTGCCTTTAGAGTCGGAGTTCATCTCGA
TCACAGAGCTGCAGCAGCGGCAGCGGGCCCAAATGAAGCAGATGCAGGAG
AAGGCTGCGGCTTTGGCGGCCATGCAACACGAAGAGACCATGAATATCGG
CACCGCCCCCATCTGGACCCTGTCCGGTGTGCCCCGCCGCAAGGATGGCC
TTAGCGGCGATGTGGACAGCAACAGGGGCACGATGACCATCACCGGCGGC
GGCGGCATTGGCGCTACGGCAAACAGCACCGCTCTTCCAGCCGAGTGCGC
GCCTGACAGCATTGGGGGCGAGCCCCGGCAGCCGCGTAGCGGGGAGCTTA
ACGGTGGCGATGAGGAGGACATCGCCGACAACGTGGACGGGTTCCTCGAC
GACTTCATGGCGCTCGCCGGCGCTTACTCCGACTTCGTCGACGGCGCCGC
GGGGACGGATTTTATGGTGGACGAGGACCTTGGCGGCGGCGGTGACGATG
GGGGTGATTTGGAGAGGATCCTGGCCGGGATGGAGGACGCAGACCTGGCG
GACTTCGGGCCTCCGCTCGCGGGCTCGGACGACGGCGCCGGCGTGGACAT
GGCGCCGTTACCCTATGTCCAGGAAGTCGTGCCGCCGAAGGCTGCTGCGG
TGGTCGTCGACGGGGACGAGGACGAGGACATTGCAGCGGCAACACCTGTG
ATTGTTGCTTCCTCTCCTGCCTCTGCTCCCGCCCATGTTGCTTTTGCAGC
TGCTTGTGTAATGTCCCCGGTGGAGGTGGACGGCACGGCGGCATCGCCAC
CGGCATGTGGGGATATTTCGAGCGCCGGGGGGCTGTTGGCCCCGGACGCG
GCCGCTAGCTCGGCGCCGGCGGCCGAGTTGGGCAAGGGAGTGGCGATCAG
CGGGGACGGTGTAGGTGCCGCGGCCGGCTCGGGGGTTGAGGTCGCGGCCG
GGGTCGGCCACAAGGAGCAGCTGCGGCGGCAGAGGGTGGCTCGCTACCTG
GCTAAGAAGAAGAACCGCTGCTGGTCGAAGCCGTCCCAGTACCAGAGCCG
GCAGCGCGTAGCCAACTCCAGGCCGCGGCACAGGGGACGCTTCCTGCCTT
TAGAGTCGGAGTTCATCTCGATCACAGAGCTGCAGCAGCGGCAGCGGGCC
CAAATGAAGCAGATGCAGGAGAAGGCTGCGGCTTTGGCGGCC
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