mRNA_P-fluviatile_contig17.2896.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig17.2896.1
Unique NamemRNA_P-fluviatile_contig17.2896.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig17.2896.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig17contigP-fluviatile_contig17:13085..20407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.306863-CDS-P-fluviatile_contig17:13084..131771622815716.306863-CDS-P-fluviatile_contig17:13084..13177Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 13085..13177 +
1693563012.584783-CDS-P-fluviatile_contig17:13084..131771693563012.584783-CDS-P-fluviatile_contig17:13084..13177Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 13085..13177 +
1622815716.320072-CDS-P-fluviatile_contig17:20220..204061622815716.320072-CDS-P-fluviatile_contig17:20220..20406Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 20221..20406 +
1693563012.5995724-CDS-P-fluviatile_contig17:20220..204061693563012.5995724-CDS-P-fluviatile_contig17:20220..20406Porterinema fluviatile SAG_2381CDSP-fluviatile_contig17 20221..20406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig17.2896.1prot_P-fluviatile_contig17.2896.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig17 13085..20406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig17.2896.1

>prot_P-fluviatile_contig17.2896.1 ID=prot_P-fluviatile_contig17.2896.1|Name=mRNA_P-fluviatile_contig17.2896.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=93bp
GRRGTKGGGLRKRMLFWRNTRVEATLGEEPEGPDLFLPLSQALKCRATSH
VFRKESHRAPAANRTRSRLQIMIAVKVATGQGCVEGKEDRIAR
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mRNA from alignment at P-fluviatile_contig17:13085..20407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig17.2896.1 ID=mRNA_P-fluviatile_contig17.2896.1|Name=mRNA_P-fluviatile_contig17.2896.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=7323bp|location=Sequence derived from alignment at P-fluviatile_contig17:13085..20407+ (Porterinema fluviatile SAG_2381)
GGAAGAAGGGGCACGAAAGGGGGAGGCCTGAGGAAGAGAATGCTGTTTTG
GCGGAACACTCGTGTCGAGGCCACGCTGGGCGAAGAACCGGAGGTGAGGG
GAAGACTTTCCGACCACGAGTTTTAACTCTTTTTAAGATTTCGGCGAAAA
ACATCATTCTCGCCTGTTGGGTACGTTTTTGAAGAGCACCGGATGGTGCG
CTGTCACAACTCCCGCCGCTCAATTcCCCTCGTGCAAAGTATATATATTC
ACCCATATATTCTTGTTGCCTCTAAGTTTCCTGCCAGGTTGGAAATCCAC
GACCCCCTTCGGCTGCGAGCCCTGTCCCGTTCTACCCTCTCACCCGAATT
CCCGCGGCCTGAGACATGATATCCTCCAGCGGCCCGAGGGCGATCATGAA
ATCCTCTCGCCCTGCATGCATGTCGGCGGTCCGGGCATTTGATAGTAATC
TTGGTGGTGACCTTTATGGTGATCTTGATAGTAATAAGTGATTCGGATAG
TGACTTCGAACGTGATTTGTTGATGTACATTTCGTCGTTGTTCGAATAAT
GATTTTTTATTTCTCTCCGTGTTGTAACGGCACTGCAAGATCACGGAAAG
AATGTCAGCGTCAGGTGCGCCCGGTGACACTTTCGCTGGATGAATGGGCG
CTTACTCGCGGAACCCATGCCTCTCTCTGTGTCTTCACGATGGCCAAGAT
GTTCTTGCCCACGTTCTCGGCGAGAAAATAGGACGCACGTTCACTTCCAT
CGCTACTAGCTAGCTCGTTCACATCAGCCACACCGGTATCCATTCTCTGC
CTCCCTTCTCTTCGAGCTGTTTCCACACAATGAGTAAGGTCCTCACGGCT
TTTGGGGGCACCGTAAACCATCGCCGCGACTCATTGCTTCACTCACCAAG
CGACAGGCACACCGTGTACCCCATCGCGACGCATGTGGCCTTCCGAGTCT
CGTCTGACAGCAGCGCCCGCTCGCCGAAATAGCTTCCCGGCCTTTTCCCA
AAAGTAGCAGATTTTCCGTTCCATTTTGGTTGTGCGGTATTTAACAGCTA
GGCGTTTTTAGTGGCGATCATTCGTGGGGGTGAATAAGGATGAACGGAAG
AACAATGAAGTACTATCCTCGAGGCGCTGTCGGCGACGAAATGTTTTCTG
GGTAAGTTGCAAATACCTGCGCCTCGAGCCCATGAGAAATCGTTCTAGGA
CGAGTCTTAAAAAAGACAAGAAGTGTGCAGCGCGGAGTGGAAGCGCCCGC
ACGGGCTGGAATGCATGATTGCAGCACTACCCTAGTGTTTTGAGCGGGCT
GGCTACCTCAGCCTAGGTCATGGGCACCCACGGGCGCTCGCAGCAACTGG
AAAGACGATTCAAGCCTTCCGCTCACTTGAGCACGCCAATCTGCGGCCCC
ATTCCGTCGTCGCCTCCCGCCCCGTCTTCGCCTCTCTTGTGCACGGCGAT
CGCCCCGCTCTGCACAATGTAGAAAAAGTGCCCGATCTCGCCTTCCCGCA
CGATGCAATCTCCGTCATTGAAGGCCTCCTCCTCCAGCGCGTCCACTAGC
TGCTCCATGTCGCCTGGTTGGCAGAGGGGTCCGTGAAAGTCGTATCATCA
TGGTCGCTATTGTCGATGCTGCCGCCACTGCTTTCTAACGCTGTGCTTTA
TTTTGTTTCAGTTTCTGGTGCAATTCTTGCTCCTGCTCTTGTTTTACTTG
CTTCGTCAATCGGAAATCTCAAAAAAGGCTTCCTCGGCGTGTGTAACCAT
GAATCTGCGCATAGAATGACAGGGGATGCTACGATGCCATATACACTCCG
CAGCCACGTAAACCATGCGGGAAAAACGCCAACACAGCAAGTCTTGGGAG
AGAGAAGTGAAGCGGCGCAAAAATTGGCGTGGCCAGTGAACAAAGCGTCG
TCTTGTAGGCACGCACTCTTCGAGAGCTTGGACTTGAAGGTGTTGTCTCC
GATCACGACGTTCCCGAGCAGCTCTATCTTCTTCGCCACGTTCTTGGCCT
TGATGCTCGTGAGGATGGAGCGCACGGTGGACCGGTGGATCACCCACAGC
TTGCAGTTCTCCGCCGCGCGCAGCCTGCGGACAAACGCAGGAGCGGTTGT
CATAGAATAAAAGGTGGGGGAATGGAGCTTCGGATGTACAGCGGCATCCT
GTACGGTCGTCGCAAGGTTTGTGAGTGAGGTCGGCGGGGATTCTGACTAG
CCGAGGGCTTGAAAAAAGGAGGCCGGGAGGGGAGGGAAGGTATCCGGTCG
CGTGTTGGCGTCGTTGAATCAAGCGTGTGGGTGCATTGGCTGCAAGACCA
TGACAGGCGTTTTCACCAATGGTCGCCTTGCTGTCAGTACGGTGGGAAGT
TTCTGAGCACGAGATCATAAACCCTCATATGCCTCTCGCAACAACAATGT
TTATGAAACGATTTTCCTACAAGAGCCGAGGGATCCTCTGCACAACACTC
CCAAAGAGAACCCCCTCCCCTGTTTTGAAAACCCGTAACCCCTCCCTCCC
TCGCACTCTCGCGATGGTGTCAACCCCTAAACAACGGCACATCATTTGCG
CTGCCCCTGGGATACCACGGGGGAGAGGCTTCTCTCGGCGAAAGCCGAGG
GGATCACGCACCCATTCGGGACCATGCCTCAACATCCAGGCACGAACAGA
CTCGGGGGCCCCACCAGGTGTTAAAGGAGTCTCACAGAGAAGGAGGCCCG
CATAATCGCGAGAACACTTCCTAGCTGCCAACTGCGTGCTTCGCTTGTCC
TGAATCTACGTGTCTGAAGGGGAGATGCTGAAGTATATAACAGGAAAGAG
GTTTACATGTTTGCTGGTGTTTGTGCCCAGCGCTTCATTCGACAGGACTG
CCAGCGCGGATCGATGGGTACGGTACGGCGGGACGAAGTGGTCACTGCAA
ACTCCCGAGAACCCTAAAAAACGACCACTTTTTTGGGGGGGGTCTTGCTG
GCGGGAAGCGGAAGGGACTGCCCCTGACATATGGCCGACGGCCATCGCAA
TAGAAAACGTCCGAATAGATCTCGCTGTAATTGAAGGCATCCGACTATCT
ACGGGGGCTTGCCTGGTCTCGACCGCACTCCCAAGGCTTTAATTTATTTC
GAGATTAGAAAAACAAGCAGCTCGGCCGACCCGCGTGGCGCTCCGCAGCG
TTCAAGGCTCGGGCACTACCCGTACATGTAGAACGCTGGAGATATCCAGC
AAGACTCGAGGGACTATGCGTACAACCTGTTTGACTAATAGTGTCAGACG
AAAGAGCAAGCGCAGGTGCACCAAACACAAAATTTTTGGGGAAAGCCCAG
TATCGATTACCCCTCCCCCCCCTGAGCTGCTATTTTTGCCTTCCCCTCGA
TGACTCACGTCGCTGCCCGGGGGTTGTTGTACATGAGGGCCAGCTCCCCA
AAGCTCTCCCCCTTCACGTAAGGGGTGCGGACCTCTGTCTCCTGGGTTTC
GCCTGGGAAGGTCACGAAGCACTGCAAGACCCCCTCCTCGACGACATAGA
AATCATCACCTTTCTCGTTCTATCGAACAAAAAAAAAGGGCAAATAGAAA
AGAGGGAAGGAATGCATCCATAACAAAGAGCGTGGTATACGGTGCAAATA
TTACGGGGAAAATTTGGCCGTTATGATGATAAAGGTTGAGCCAATGGAGG
AAATACGCTAATGTCCCGGCGTATGCGGCACATGTCGAGGGCACTATGAG
CCCCTGGAACGTGTGGACTACATAGTGCACCATACAACAATCGATTTATG
CAGGATCGCAGTGATGAAGTACACCTTTCAATTGAGACACAAACATAAGT
GTATGGATCTTCCTGGGCGACGGGACGAACGTTAGGGGCATTTTCGGTTA
CGAGCAACACCAGGGTACGTTTTGTGGACAAGACTACGTCGGCCCTCTAC
CACAGAAAACGTGCCTACGGTCGATCGACCCACGCAGTGCCTTGCCCAAC
GCAAAATTATTGTAGCCATACGCCTCCGTGGGTCTGGTCTAACACCCGAT
TGCTGCACCATCGATCGACGGGCGCCTTGCCCTCAGGTCCTTTCCGGGAC
ATCTTGGTGTGATGTTTCTCACGCCGCCCGCATCAAGTCCCTGCACTCGT
TCTCAAAGAAACCCGTGTCAAGCAAGATAACAGCTGATGAGAGCTACGAA
CGGTCACTTTCCTCCATAATAAATGTCATCGGGCCGTGAGTGCGCCCGTT
TACACGAACAAGAAACGACCGCACGGGTAAAAAATATCAGCAGAACGTCA
TTCATGTGTCACCCACCTGTAGCGATACACGAAACCCCTCTGGAAAGCTG
GCATGGGCGAATGCCCTCTGTGAGATTGGTGCCCAAGCTGCATGAATCAC
AGCACCCACCTGAGTGATGACTTGGGTGCCCTTGGGGAAGTTCGCGGGAG
CGAAGGCCTCCACGAGCAAGGCGAACTCCTCCTTTCCACAGTTCTTGAAC
AGGACGCTGTGTTCGATCGCGGACAGAATCAGCTCGGCGGTGGCCTCCGG
CTTGGGAATGAGCTGGTGTTGTCAATTTAGTTCCGGCGACGAGGTCACGA
TCGCGTAGGTCAGGAGAGAGGCAATGCAAAAATTACGGCTTGGCATCGGA
GTTTTTGATTCAACTTCGGCCGTGAGGTCATGACAATCGGTCATGTTAGC
AGGAGGGCAAATCCTAAGCAGCCTGGTTTTTCTTTTGTTTCTCGGTTTGA
CGTCGACTGGGAGGTCGCAATCGGCAAAGTCAGCAGCAGGAGGTATAGGC
GATACGGCTCGACATTTGCACCCTTGCCGTCTGAGACCTAAGCCATTCGA
CCCCTGTCTCACCCGCAAAGAATTTCAACCCCGGATCACACGTTATAAGC
GGGTGCAGACCAGGCACGGACCATCCAAGTGCGGGAGTGCGGGTGTGCGG
CGGTGCGGGGTACGACTAAAACGCCCTTTGCCTTCCACGATGGACCTGGT
AAGCGGTGCCTCACTCTCTCGATCTTAAACGCCGACCCCCACTCCAAATT
GGAGAAACTGCCCGACTCAATCCGCCTTCAATGCCCTTTTTTTTGCCGGC
GGAGCTAGAGCCTCTGCAGGTACACGTTCTTTGTTTTCGTCATTGCAAAG
AAACTACAAATAAAATTATTGCTCGAGGTTCCGGCACTCGAGTATAAACT
TGTTTGGCATACCGCTGGCTTCAATTTGGAGGGGAAAATCTACTTCACAA
CGTGCTTGCGTGTTTCCTGAAACAAAAAAGCAAATGCGTATAGGTACGTG
TTCTTCTTGTGCCTACCGCGACTGATTAACTTATCGAGAGGTTCAAGATC
AGTAGCAAAACCCAGCGAAGGGAAAAATAACATACATTGAGGGCCACGCA
GACGTACCACGTGCTGGTAGGGCTCGACCTTCTGCAACCCCGCGCAGACG
GCCGCTCGCCCTCTCACATGGTCCCCTGCTCCGCCGGCTACTTGTCGAGG
AACGTGGTGCATCGTTAGTCGCCGTCTCGTCGTCGTCGTCGTCGTCGTCG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGT
TGTTGTTGTCGTCAGTGCTGCGGTTGTCTTTACTGTTGCGTGCACTGTTG
TGGCTACGGTTGGTGTTGTTAACGTTGTGGTTGTCGAACTTCGGACGTGT
TCTGTTTTAGCTGCTCTTCCTGTTGTTTTCCTTCCCATTTGGTATCATCT
ACAGCAAGACTCGGCGCACGACCATGTGTTTGGGAGCTTGCATGTCAGCG
CCACCACCAGGCGTTCAATTCGCATTTACCGGTCAATCAATACCAGAACA
TGAATGCGAGATTTCGCCCAAGAGGGGGCAAAGAGATGGGTAATTCAGGA
GATGGACATGAAGAAAAAGTTGCTTTTCAATTGTTCATGACGTGCCCGAT
AACACCAAAGTAAGCGTGCAATCACACCGAATGCCGCTGGACCGGACATA
AACTACGACGACGTCGCTGTCTTCGATCTCCGTTGGGAGTTGAGATGAGC
GGATTTCACCGCCTACCTGGGGTCTACCTATCTTTTTCTCGTTGCGCCCA
CCCCTGCTCTACTCCGACTAACAAACGCTGCAAATCGCGTGGACGATGTC
GACCGCCCATCACTTGATTTTTTCATAATGTCGTGTTTCGCTTACATCTG
TCCGTTGGCGGCTCGGACATCTTGTCCGGAGCCTGCCCGATGAAGGCAGC
GCCAGGACCACTAGCGCTTAAAGAACGTGTCCGAATCCGAAGAAAACAAA
CAAACAAAAAATAGGGAACGAAACAGGGGGAAAAGATTGTGGGCTTCTTG
TGAGTGTTCAGTGCACACGATGAAGCGGTTGGCGGGGCCAGCAGAAATGC
ACGTTTAGTCATTCTCTTTACCGTCAGATGACTTCATGCCGGCGACAAGC
AGAGAATGGTGCTCTTACGGACAGCGGCGGCTGTGTGTCGCCGCGTGAGC
GAAGCCGATATTCGAGAATATTTGATGACGGCGTGAACGCCATCATCCTT
TCATCCTGCCCACTTTCGCCGTGACAGCAAACGTGTCCTATCTTTCTTGC
ACTGGAGGGAGGATCTCCGAAATTTTTTACCTGGAACTACCGCAGCAAGC
GTGCGCCATCTGTATGCGTTTGCCATAACAGCGTAAAAATAGGGTCCGGA
AATGCCACTTGGAACACTTGATGTCCAATCTGAAAGTTAAGTGGCTCTTG
TTTCTACAATATCCTCCCCGGCACCGACACACTAAGCGCATTGAAGAAAT
CGAGCTCTTTGAAACGTCCAGGAGAAGTGCACGTCGTCTGTCGTGGCCTA
CGACGTTGCCTTCCATGGCTACATCGTCAACAAGCCGAAAAGCAACACCA
CCCGTTCGTTTGTTTGTTCAAGGTTTAAATAAACCTTTGGTTGCAGTCAA
GCCGCAGAAAGTACACGCTCTCTCCCCTCTTTCCGAACGAGCAGTTCCCC
CCCCAAAAGAAACAAAGAAATCTGCCGCGTGCAGCGGACTGCTGGGACGC
AACATAGCAAACCGATGCGAAACGCCTAAGTGACAACAACGGCTCCCTGC
ACACCTGACTCCCACGTTTTTGATCGCCTCTCGCAGGGCCCGGATCTCTT
CCTTCCCTTGTCCCAGGCTCTGAAGTGTCGCGCAACAAGTCACGTGTTTC
GAAAAGAGTCGCATCGTGCGCCCGCCGCCAATCGAACCCGATCAAGATTG
CAAATTATGATTGCAGTTAAAGTTGCAACAGGGCAGGGGTGTGTGGAGGG
GAAGGAGGACAGGATAGCGAGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig17:13085..20407+

>mRNA_P-fluviatile_contig17.2896.1 ID=mRNA_P-fluviatile_contig17.2896.1|Name=mRNA_P-fluviatile_contig17.2896.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=558bp|location=Sequence derived from alignment at P-fluviatile_contig17:13085..20407+ (Porterinema fluviatile SAG_2381)
GGAAGAAGGGGCACGAAAGGGGGAGGCCTGAGGAAGAGAATGCTGTTTTG
GCGGAACACTCGTGTCGAGGCCACGCTGGGCGAAGAACCGGAGGGAAGAA
GGGGCACGAAAGGGGGAGGCCTGAGGAAGAGAATGCTGTTTTGGCGGAAC
ACTCGTGTCGAGGCCACGCTGGGCGAAGAACCGGAGGGCCCGGATCTCTT
CCTTCCCTTGTCCCAGGCTCTGAAGTGTCGCGCAACAAGTCACGTGTTTC
GAAAAGAGTCGCATCGTGCGCCCGCCGCCAATCGAACCCGATCAAGATTG
CAAATTATGATTGCAGTTAAAGTTGCAACAGGGCAGGGGTGTGTGGAGGG
GAAGGAGGACAGGATAGCGAGGGGCCCGGATCTCTTCCTTCCCTTGTCCC
AGGCTCTGAAGTGTCGCGCAACAAGTCACGTGTTTCGAAAAGAGTCGCAT
CGTGCGCCCGCCGCCAATCGAACCCGATCAAGATTGCAAATTATGATTGC
AGTTAAAGTTGCAACAGGGCAGGGGTGTGTGGAGGGGAAGGAGGACAGGA
TAGCGAGG
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