mRNA_P-fluviatile_contig16.2869.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2869.1
Unique NamemRNA_P-fluviatile_contig16.2869.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2869.1 vs. uniprot
Match: A0A6H5K9N2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9N2_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.060e-44
Identity = 80/105 (76.19%), Postives = 92/105 (87.62%), Query Frame = 1 
Query:    1 MASVLEVMKGPIGVAFLTMVSVLVVVGGVALCRHLCCKPTVNYTAVNHGLDDEETAFKNALETQN-GGDDIDELFTFSGEDELEFDTSDLDNIEMLQVCTPILGM 312
            MA V+E M+GPIGVAFLTMV+VLVVVGGVA+CR LCCK  VNYTAVNH LD+EETAFKN+LE QN GGDDIDELF FSG+DELEFDT+DLDN+EM+Q+    LG+
Sbjct:    1 MAGVIEAMQGPIGVAFLTMVTVLVVVGGVAVCRRLCCKTAVNYTAVNHSLDEEETAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMMQMYRSNLGV 105
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BLAST of mRNA_P-fluviatile_contig16.2869.1 vs. uniprot
Match: D8LB60_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB60_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 5.470e-43
Identity = 79/104 (75.96%), Postives = 89/104 (85.58%), Query Frame = 1 
Query:    1 MASVLEVMKGPIGVAFLTMVSVLVVVGGVALCRHLCCKPTVNYTAVNHGLDDEETAFKNALETQN-GGDDIDELFTFSGEDELEFDTSDLDNIEMLQVCTPILG 309
            MA V+E M+GPIGVAFLTMV+VLVVVGGVA+CR L CK  VNYTAVNH LD+EE AFKN+LE QN GGDDIDELF FSG+DELEFDT+DLDN+EMLQ+    LG
Sbjct:    1 MAGVMEAMQGPIGVAFLTMVTVLVVVGGVAVCRRLLCKTAVNYTAVNHSLDEEEIAFKNSLEAQNEGGDDIDELFNFSGQDELEFDTNDLDNLEMLQMYRSNLG 104
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BLAST of mRNA_P-fluviatile_contig16.2869.1 vs. uniprot
Match: A0A7S2V8A7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8A7_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.540e-9
Identity = 34/74 (45.95%), Postives = 46/74 (62.16%), Query Frame = 1 
Query:   67 LVVVGGVALCRHLCCKPTVNYTAVNHGLDDEETAFKNALETQNGGDDIDELFTFSGEDELEFDTSDLDNIEMLQ 288
            L++  G+  C     +  V Y AV H LDD+E  FK  LE + G D ID+LF F G+D++EFD  DLDN+E L+
Sbjct:   22 LIIFFGIRRCNKCKRRSQVPYNAVAHELDDDELLFKKTLEMK-GDDVIDKLFDFDGQDDMEFDAKDLDNLESLE 94
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BLAST of mRNA_P-fluviatile_contig16.2869.1 vs. uniprot
Match: A0A7S2RGQ9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RGQ9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 9.190e-9
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  112 KPTVNYTAVNHGLDDEETAFKNALETQNGGDDIDELFTFS--GEDELEFDTSDLDNIEMLQ 288
            K    YT V+HGLDDEE AFK  LETQ   D+ID+LF F+  G+ E+EFD S+L+ IEML+
Sbjct:   82 KKDYRYTMVHHGLDDEEQAFKRNLETQT--DEIDDLFNFTADGDQEIEFDASELEQIEMLE 140
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BLAST of mRNA_P-fluviatile_contig16.2869.1 vs. uniprot
Match: A0A7S2G3L3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G3L3_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.990e-7
Identity = 36/85 (42.35%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   40 VAFLTMVSVLVVVGGVALCRHLCCKPTVNYTAVNHGLDDEETAFKNALETQNGGDDIDELFTFSGE--DELEFDTSDLDNIEMLQ 288
            +A  T+  +++++  + L +H       NYT V+HGLDDEE  FK  L++Q   D+ID+LF F+ E  +EL FD S+L+ IEML+
Sbjct:  101 IALSTVGGMMIMLALLLLYQHCLKHRDYNYTRVHHGLDDEEQEFKKILDSQT--DEIDDLFNFNEENDEELAFDASELEQIEMLE 183
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K9N2_9PHAE1.060e-4476.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB60_ECTSI5.470e-4375.96Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2V8A7_9STRA2.540e-945.95Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2RGQ9_9STRA9.190e-957.38Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2G3L3_9STRA3.990e-742.35Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:2701011..2703342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size538
Cds size396
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2869.1prot_P-fluviatile_contig16.2869.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 2701011..2703200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.057061-CDS-P-fluviatile_contig16:2701010..27010821622815713.057061-CDS-P-fluviatile_contig16:2701010..2701082Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2701011..2701082 +
1693563010.0618343-CDS-P-fluviatile_contig16:2701010..27010821693563010.0618343-CDS-P-fluviatile_contig16:2701010..2701082Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2701011..2701082 +
1622815713.0684452-CDS-P-fluviatile_contig16:2702876..27032001622815713.0684452-CDS-P-fluviatile_contig16:2702876..2703200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2702877..2703200 +
1693563010.0753665-CDS-P-fluviatile_contig16:2702876..27032001693563010.0753665-CDS-P-fluviatile_contig16:2702876..2703200Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2702877..2703200 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.0797896-UTR-P-fluviatile_contig16:2703200..27033421622815713.0797896-UTR-P-fluviatile_contig16:2703200..2703342Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2703201..2703342 +
1693563010.0854523-UTR-P-fluviatile_contig16:2703200..27033421693563010.0854523-UTR-P-fluviatile_contig16:2703200..2703342Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2703201..2703342 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2869.1

>prot_P-fluviatile_contig16.2869.1 ID=prot_P-fluviatile_contig16.2869.1|Name=mRNA_P-fluviatile_contig16.2869.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=132bp
MASVLEVMKGPIGVAFLTMVSVLVVVGGVALCRHLCCKPTVNYTAVNHGL
DDEETAFKNALETQNGGDDIDELFTFSGEDELEFDTSDLDNIEMLQVCTP
ILGMTRLSLLWKWGCCQQCTPRVWQRSFTLH*
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mRNA from alignment at P-fluviatile_contig16:2701011..2703342+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2869.1 ID=mRNA_P-fluviatile_contig16.2869.1|Name=mRNA_P-fluviatile_contig16.2869.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2332bp|location=Sequence derived from alignment at P-fluviatile_contig16:2701011..2703342+ (Porterinema fluviatile SAG_2381)
ATGGCGAGTGTACTGGAGGTAATGAAGGGTCCAATTGGCGTCGCATTCCT
GACGATGGTTTCTGTGCTTGTGGTGAGTGGTGAATGTTGCCGGCTCTCTC
TTTGAGGATTAAGAACGATCGAAGAGCAACTTATTGCACCGCCTTTTTTA
ATTTCCACACGAGGTCAAACAGGCTCGAGACGACTCTCACCAGCCAGACG
AGTCACGGACAGGATAGGGAAGATGAAGGCCAACAGATTATTCGAGCTAC
CACCTTTGTCTGCTATGTGATGTGTTCAGTTTTAAACGTGCGTGTACTTG
GAGTCGCTTCTGATCACTTCGTTGCTCTCGCGCCACGGACACGCAGCAGC
AGTGTCCCTGCTACATGTGTGTCGAACATCTCGTGCACGGCAGGGTGCGT
GCCCTCTTGCAATGGTTCAATTTTCGCATGATGCTAACACTTCGTTCGAC
TCTCCAGCATGCAAGGCAACGAGACATTTCCCGTTGCTTTTGACAGTGTC
GTTACGGTTCAGTGCGGATCCCTGCGAATGCGACGTGTTCGCTCTTTGGG
CCGCGGCTTCTTTCCGTGGGTGTGGCCCGCCTGTTAAGCCCACACACAAC
CGAAACGTATGCCAGAAAATGTAGACGAGAACATCAATTTTAAGAGCAGA
AGTCAAACATTGGAGAAGAATCGCCCGTGAGAACCGGACGCACAGATGGG
ACGCACGGAGGCCCGGCGGGATCCCCCCAAAGTCATGTCCTCCCTCCCGC
ACGCTTTCAAGACCAAGGCAGGGCGGGGACTGTTCTTTTTTGTTTCCACG
TGCTACATTGACGCTAAGTCTACGTCCTTCTGGGCGACTTTTCGTGAAGA
GGCGCTTGTTAACGGGTGCAAGTGGTAAAACTACTTGACCTAGAGAAGGC
GTCATGAGTCTTGGCAAACCTCGGTGTGGCGACGTCGTTCTTGTTTCTGC
GGTTACCAGTGGGGGAGTAAGGGATAGTGAACACGTCGCTTATTATTCAT
ACCACTTTGATATTGTTGTGGCAACTGGCCAACTCGGCAACAGGCGCCAC
GGGTTCCGCTTGTAAGTACGACCAGCAGCTTTTCAAAATGAGGGGAGGGG
GGGGCGCCGAGGGGGTTGCGGAAGAGGGATCGATTGGATATACATCCAGC
CTCCATATGGATGGAAGGTATGGGTCGCGGAGAGAGCACACATGTTCCAC
ATCGGCCTCGATTTGCCGGGATATCAATTTAAACCCCTTACCCAAAATAA
GACTACATTCGAAACGTAGGCGATGGACTAAGGCCGGGATGCCGAAAAGA
ATACCTCTTCAGGAACTTGGCGGGAGTCGCAGAACATGTCATTAAGCAAC
CTCTCGTTCTGCCCGGAAGATTTCACGAGCGCAAAGCCCTAAGGAAGCCA
GGAGGAGCACATGGGCGATTCTTCCTCCTCTACATCGAAAGTCTTGCTCA
GGCTCAAGACGTAGTAGCCGTCGTCGAGTAGTTATGGTGTCGGCAGCTGC
GTGTGCGCACGCATGCGTGTGTGTTTCAGGATCGATCGCCCCGAGTAGCT
GATCAGTGGAAAGACGCTCAGTCTTCTCAGGAGAATGATACGGAACCCGC
TCGTTAAGCGCACAGGCGACACACGGGGCGAAAACGTGAAAGCGATTTGT
AGTTCAGATATGCGAAAGGTCGCGTGGAACGTGCTGCACTAGGGTTGTGT
TGTCGTATGTGCTTGATTGCTTGTACGTCAGTTGTCTCTTTAGATTGCTG
AACTTTAGCAAGGGCAGAAATTTCAAATTTTGCACTGGAAATTTCTCCTT
TTGAAAACCTCCGTGCCCCTGGAACACCAACTCTCTGGACCCCCCTCTCC
ACCCCCGGGCACAAAGGTTGTTGGAGGGGTGGCTCTGTGTCGACATCTAT
GTTGCAAGCCGACGGTGAACTACACAGCGGTAAATCACGGCCTGGATGAC
GAGGAGACGGCCTTCAAGAATGCTCTTGAGACGCAGAACGGGGGGGACGA
CATCGACGAGCTCTTCACGTTTTCTGGGGAGGACGAACTGGAGTTTGACA
CGAGCGACCTGGACAACATAGAGATGCTCCAGGTGTGCACCCCAATTTTA
GGCATGACGCGATTGTCTTTGTTGTGGAAGTGGGGCTGTTGTCAACAGTG
TACCCCACGTGTCTGGCAACGATCATTTACTTTGCATTGATGTAGATAAT
TTCGTTTGCATTGATATCTTCATTCATTTCCGCACAATTTTTTTAGCGTT
GGGCACGGTAGCGAGGCTCACGGATTGTAAGGAAGCATTGCCACGGGCTC
AGCGGCAGTGTGCGTCTTGCTCTCACCCCCGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:2701011..2703342+

>mRNA_P-fluviatile_contig16.2869.1 ID=mRNA_P-fluviatile_contig16.2869.1|Name=mRNA_P-fluviatile_contig16.2869.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=792bp|location=Sequence derived from alignment at P-fluviatile_contig16:2701011..2703342+ (Porterinema fluviatile SAG_2381)
ATGGCGAGTGTACTGGAGGTAATGAAGGGTCCAATTGGCGTCGCATTCCT
GACGATGGTTTCTGTGCTTGTGATGGCGAGTGTACTGGAGGTAATGAAGG
GTCCAATTGGCGTCGCATTCCTGACGATGGTTTCTGTGCTTGTGGTTGTT
GGAGGGGTGGCTCTGTGTCGACATCTATGTTGCAAGCCGACGGTGAACTA
CACAGCGGTAAATCACGGCCTGGATGACGAGGAGACGGCCTTCAAGAATG
CTCTTGAGACGCAGAACGGGGGGGACGACATCGACGAGCTCTTCACGTTT
TCTGGGGAGGACGAACTGGAGTTTGACACGAGCGACCTGGACAACATAGA
GATGCTCCAGGTGTGCACCCCAATTTTAGGCATGACGCGATTGTCTTTGT
TGTGGAAGTGGGGCTGTTGTCAACAGTGTACCCCACGTGTCTGGCAACGA
TCATTTACTTTGCATTGAGTTGTTGGAGGGGTGGCTCTGTGTCGACATCT
ATGTTGCAAGCCGACGGTGAACTACACAGCGGTAAATCACGGCCTGGATG
ACGAGGAGACGGCCTTCAAGAATGCTCTTGAGACGCAGAACGGGGGGGAC
GACATCGACGAGCTCTTCACGTTTTCTGGGGAGGACGAACTGGAGTTTGA
CACGAGCGACCTGGACAACATAGAGATGCTCCAGGTGTGCACCCCAATTT
TAGGCATGACGCGATTGTCTTTGTTGTGGAAGTGGGGCTGTTGTCAACAG
TGTACCCCACGTGTCTGGCAACGATCATTTACTTTGCATTGA
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