mRNA_P-fluviatile_contig16.2851.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2851.1
Unique NamemRNA_P-fluviatile_contig16.2851.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig16.2851.1 vs. uniprot
Match: D8LB50_ECTSI (Palmitoyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB50_ECTSI)

HSP 1 Score: 258 bits (658), Expect = 1.420e-74
Identity = 213/517 (41.20%), Postives = 267/517 (51.64%), Query Frame = 3 
Query:  144 EMSVLRSSHILVNTTPDFSPNSQLPYSSLRRPWFAVRANVKASREEACAFSEGGLAVTTATAVQTNTRAKRDWLRVAPTRQSSQSALRYAKGVRGGCTARGEASRIRRERRQLRRFISPALVWVVAIATDFNLWAR---QAPISIASRACRRGNDTKSAGFAWGRVFESVVAYSGHFVCFHVLLGLALLSHIVVTVSDPGFLPRGNITLGGAHE--GGRWCERCEQPKPPRAHHXXXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLLLLYAAVCAAHATYLYFGTFRRSSPDGKGFFNIGKELPTWRALDDGLWPTVTVLVFVWLAVLLAVQLYGIAVDAGIVDRLQVAALDHRNAEKNGIPKATAMEPLRREQW-------LECPPGAVRPCRAKQIFRPPLFPDRNRGTGFGAIRYSAGENQPTEHAYRPATTAAAGAFPAVDLAPPRDPGWMADCDGGDGAIGRGFQLYRELWRSMSEEILGEGPWLLWLVPTAARLSPEAQERVYSTHGLAKR 1658
            E+  LRSS  L+      SP S L    LR P  A   N  A   E  + + G L       V+ N            + +S  S LR A+ V GGC       R R  +R+L  F++PALVW+ A+  ++ LW R    API   S              A G V + V AY  HFVCFHVLL LALLSH+  TV+DPGF  RG+  LG A E   GRWC  CE  KPPRAHH  XXXXXXXXXXXXXXXXXXXXGAGNHKQMLL L+Y+A CA HA +L+                        R  +  L   + V +F WL  L++ Q++GI V AG VDR+Q AA  +R A + G   A   +  R++ W        ECPPG + P        P L  D    TG           + T+ A RPA+ ++ G   AV L P   PG +A  D   G +G  F++ R LW ++ +EILGEG W+LW VPT ARLSPE ++RVY+ HG A R
Sbjct:    9 EVGGLRSSSSLLALVTATSPTSHLSPHPLRGPVPAKSENRTACNFELFSRATGSL-------VEANGSGHPSC-----SSRSVASGLRAAQAVTGGCARAKRRGRHRPAKRRLASFVAPALVWIFALEAEYFLWWRGGCAAPIERPSWCTIP---------ALGSVVKVVHAYGWHFVCFHVLLCLALLSHVAATVTDPGFFSRGSHLLGRAQERGSGRWCSHCEAYKPPRAHHCRXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLFLVYSAACAVHAAFLF-----------------------CRLCNAFLMAVLLVGIFSWLVCLISSQVHGIRVHAGTVDRMQAAAPGYRAAGQAGALGAAPPDSRRQDGWPGLLPTRRECPPGHL-PLPGDGRVTPVLDEDATSSTG----------QELTQGARRPASASSGGFEVAVSL-PRATPGAVAG-DAASGGLGLRFRVIRGLWETVHQEILGEGAWVLWFVPTPARLSPELEQRVYAPHGKAGR 468
[Close]
BLAST of mRNA_P-fluviatile_contig16.2851.1 vs. uniprot
Match: A0A0V1IDD3_TRIPS (Palmitoyltransferase n=15 Tax=Trichinella TaxID=6333 RepID=A0A0V1IDD3_TRIPS)

HSP 1 Score: 59.3 bits (142), Expect = 2.200e-5
Identity = 62/146 (42.47%), Postives = 76/146 (52.05%), Query Frame = 3 
Query:  633 FESVVAYSGHFVCFHVLLGLALLSHIVVTVSDPGFLPRGNITLGGAH-------EGGRWCERCEQPKPPRAHHXXXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLLLLYAAVCAAHATYLYFGTFRRS-SPDGKGFFNIGKELPTW 1046
            F SVV    +   FH+LL LAL+SHI   ++DPG +P+GN +            E    C +C   KP RAHHXXXXXXXXXXXXXXXXX     G GN K  +L   Y A+ + HA Y     F R    D KG      +  T+
Sbjct:  414 FHSVV----NCTIFHILLALALISHIKTMLTDPGAIPKGNASEESMQLLNLKRGETVYKCGKCYSIKPERAHHXXXXXXXXXXXXXXXXXVNNCVGEGNQKFFVLFTFYIALISCHAIYWAVWKFLRCLEVDWKGCSRFSPQETTF 555
[Close]
BLAST of mRNA_P-fluviatile_contig16.2851.1 vs. uniprot
Match: A0A1Y3EYV0_9BILA (Palmitoyltransferase n=5 Tax=Trichinella TaxID=6333 RepID=A0A1Y3EYV0_9BILA)

HSP 1 Score: 57.4 bits (137), Expect = 3.000e-5
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:  672 FHVLLGLALLSHIVVTVSDPGFLPRGNITLGGAH-------EGGRWCERCEQPKPPRAHHXXXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLLLLYAAVCAAHATY 968
            FHVLL LAL+SH+   ++DPG +P+GN +            E    C +C   KP RAHHXXXXXXXXXXXXXXXXX     G GN K  +L   Y A+ + HA Y
Sbjct:   64 FHVLLVLALISHVKTMLTDPGAIPKGNASEESMQLLNLKRGETVYKCGKCYSIKPERAHHXXXXXXXXXXXXXXXXXVNNCVGEGNQKFFVLFTFYIALISCHAIY 169
[Close]
BLAST of mRNA_P-fluviatile_contig16.2851.1 vs. uniprot
Match: A0A0V1BAY1_TRISP (Palmitoyltransferase n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1BAY1_TRISP)

HSP 1 Score: 57.4 bits (137), Expect = 8.350e-5
Identity = 52/106 (49.06%), Postives = 63/106 (59.43%), Query Frame = 3 
Query:  672 FHVLLGLALLSHIVVTVSDPGFLPRGNITLGGAH-------EGGRWCERCEQPKPPRAHHXXXXXXXXXXXXXXXXXXXXXXGAGNHKQMLLLLLYAAVCAAHATY 968
            FHVLL LAL+SH+   ++DPG +P+GN +            E    C +C   KP RAHHXXXXXXXXXXXXXXXXX     G GN K  +L   Y A+ + HA Y
Sbjct:  407 FHVLLVLALISHVKTMLTDPGAIPKGNASEESMQLLNLKRGETVYKCGKCYSIKPERAHHXXXXXXXXXXXXXXXXXVNNCVGEGNQKFFVLFTFYIALISCHAIY 512
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2851.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LB50_ECTSI1.420e-7441.20Palmitoyltransferase n=1 Tax=Ectocarpus siliculosu... [more]
A0A0V1IDD3_TRIPS2.200e-542.47Palmitoyltransferase n=15 Tax=Trichinella TaxID=63... [more]
A0A1Y3EYV0_9BILA3.000e-549.06Palmitoyltransferase n=5 Tax=Trichinella TaxID=633... [more]
A0A0V1BAY1_TRISP8.350e-549.06Palmitoyltransferase n=3 Tax=Trichinella TaxID=633... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:2531677..2536386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score259.6
Seed ortholog evalue3e-66
Seed eggNOG ortholog2880.D8LB50
EggNOG free text desc.protein-cysteine S-palmitoyltransferase activity
EggNOG OGsCOG5273@1,KOG1311@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons5
Model size2132
Cds size1518
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.7199023-UTR-P-fluviatile_contig16:2531676..25318221622815710.7199023-UTR-P-fluviatile_contig16:2531676..2531822Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2531677..2531822 +
1693563005.9367728-UTR-P-fluviatile_contig16:2531676..25318221693563005.9367728-UTR-P-fluviatile_contig16:2531676..2531822Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2531677..2531822 +
1622815710.797108-UTR-P-fluviatile_contig16:2535918..25363861622815710.797108-UTR-P-fluviatile_contig16:2535918..2536386Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2535919..2536386 +
1693563006.004963-UTR-P-fluviatile_contig16:2535918..25363861693563006.004963-UTR-P-fluviatile_contig16:2535918..2536386Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2535919..2536386 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815710.73143-CDS-P-fluviatile_contig16:2531822..25321871622815710.73143-CDS-P-fluviatile_contig16:2531822..2532187Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2531823..2532187 +
1693563005.946695-CDS-P-fluviatile_contig16:2531822..25321871693563005.946695-CDS-P-fluviatile_contig16:2531822..2532187Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2531823..2532187 +
1622815710.744207-CDS-P-fluviatile_contig16:2532723..25328361622815710.744207-CDS-P-fluviatile_contig16:2532723..2532836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2532724..2532836 +
1693563005.9550455-CDS-P-fluviatile_contig16:2532723..25328361693563005.9550455-CDS-P-fluviatile_contig16:2532723..2532836Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2532724..2532836 +
1622815710.758084-CDS-P-fluviatile_contig16:2533518..25336131622815710.758084-CDS-P-fluviatile_contig16:2533518..2533613Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2533519..2533613 +
1693563005.9736085-CDS-P-fluviatile_contig16:2533518..25336131693563005.9736085-CDS-P-fluviatile_contig16:2533518..2533613Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2533519..2533613 +
1622815710.7709806-CDS-P-fluviatile_contig16:2534721..25348221622815710.7709806-CDS-P-fluviatile_contig16:2534721..2534822Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2534722..2534822 +
1693563005.9855437-CDS-P-fluviatile_contig16:2534721..25348221693563005.9855437-CDS-P-fluviatile_contig16:2534721..2534822Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2534722..2534822 +
1622815710.7845807-CDS-P-fluviatile_contig16:2535074..25359181622815710.7845807-CDS-P-fluviatile_contig16:2535074..2535918Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2535075..2535918 +
1693563005.995481-CDS-P-fluviatile_contig16:2535074..25359181693563005.995481-CDS-P-fluviatile_contig16:2535074..2535918Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2535075..2535918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2851.1prot_P-fluviatile_contig16.2851.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 2531823..2535918 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2851.1

>prot_P-fluviatile_contig16.2851.1 ID=prot_P-fluviatile_contig16.2851.1|Name=mRNA_P-fluviatile_contig16.2851.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=506bp
MSVLRSSHILVNTTPDFSPNSQLPYSSLRRPWFAVRANVKASREEACAFS
EGGLAVTTATAVQTNTRAKRDWLRVAPTRQSSQSALRYAKGVRGGCTARG
EASRIRRERRQLRRFISPALVWVVAIATDFNLWARQAPISIASRACRRGN
DTKSAGFAWGRVFESVVAYSGHFVCFHVLLGLALLSHIVVTVSDPGFLPR
GNITLGGAHEGGRWCERCEQPKPPRAHHCERCGRCVARMDHHCSFVANCV
GAGNHKQMLLLLLYAAVCAAHATYLYFGTFRRSSPDGKGFFNIGKELPTW
RALDDGLWPTVTVLVFVWLAVLLAVQLYGIAVDAGIVDRLQVAALDHRNA
EKNGIPKATAMEPLRREQWLECPPGAVRPCRAKQIFRPPLFPDRNRGTGF
GAIRYSAGENQPTEHAYRPATTAAAGAFPAVDLAPPRDPGWMADCDGGDG
AIGRGFQLYRELWRSMSEEILGEGPWLLWLVPTAARLSPEAQERVYSTHG
LAKRL*
back to top

mRNA from alignment at P-fluviatile_contig16:2531677..2536386+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2851.1 ID=mRNA_P-fluviatile_contig16.2851.1|Name=mRNA_P-fluviatile_contig16.2851.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4710bp|location=Sequence derived from alignment at P-fluviatile_contig16:2531677..2536386+ (Porterinema fluviatile SAG_2381)
ATGAGCGACAGTAAGTGCAGAGCTCGAAGCTTCTTCGCTAGGACCGTGCA
CACTGGCAGGGAGACGGAGAAGTACCTCGTCGGTGAGAGCTCTGCGAGCT
GCCTCTCTTGGTAGTAGTGTTCACTGGCCTACAGGAGTGCAGTGAGATGA
GCGTCTTGCGGTCTTCGCATATTCTGGTGAACACAACGCCCGATTTTTCG
CCGAATTCGCAACTCCCATATAGTAGTCTGCGAAGGCCCTGGTTCGCAGT
CAGGGCAAATGTAAAGGCGTCAAGGGAGGAAGCTTGTGCTTTTTCCGAAG
GCGGCCTCGCTGTGACGACGGCCACGGCTGTGCAAACCAATACACGGGCA
AAGAGGGACTGGTTGCGAGTGGCGCCCACGCGGCAGTCGTCACAATCAGC
GCTACGTTATGCGAAAGGCGTTCGAGGAGGCTGTACTGCGAGAGGAGAAG
CTTCTCGTATTCGCAGGGAACGGAGACAGTTGCGGAGGTTCATTTCCCCG
GCGCTGGTGTGGTGAGCGCGTCCATACAAAAGTGCCCGCCCGTTCATAGG
AACACCTAATGCATATGTTGAACGAGGCTGATTTCGTTATTTGATCCCAC
CGCCTGAGCGCTGGCTTTCAACTTGGACTTAGTAAAGCGCCGGCAGCTTG
AGCCCAATTTCTTACACTTTCTTTTTTCAAGAATCTGAGCCTCGATTTCT
TGCGAACATCCTTCGAAATACTTCGCAAGAGCGGGTCGGAACTGCTGCAC
GTGGAGAAGAGGGAGAGTGCAAGCCATGGGACAAAGACGTGACCCATCCC
TCAGAGACAACGATATGTACACACGTTGCGAGAAACGTACAATGCACGGT
TCCTCTCTCTTATCGGTTTCGTACATACATCTCGAGGAACATACTCCATT
CGTGAAAAGATCGCGTATATTCTTAGAATAGCCGCATCAAGGCATCCCAT
TATTCAGCGGCCCATCGACTGCGAGGCTTGCGAAGAGTGAACTCAAACTG
CACGTGTGCAATGCCCGCTTTCGTTTTCGACTCTCGACGGACGCAAGGGT
CGTTGCAATCGCGACCGACTTTAATCTATGGGCAAGGCAGGCGCCGATAT
CGATAGCATCAAGAGCCTGCAGACGCGGAAACGACACAAAATCCGCCGGG
TTTGCTTGGGGTGAGTTCCGCCGCAATTGCTCCTTGCACCGAACGGGTTT
TCGATGTTCCCTTTTGAGACGTGCAGTTTCTCCCGTCGTTGAATCTACAA
TCTCTTGGAGGACGCAAATGCAGTCGTGAATACACTTCTGCTGCCTCGAA
GGCCAGTGTTTATGGATGGACCAAACTGGAACTTGTTGCTCGTTGCGGAA
GGTTGCCTGAGCCTCCCCGCTCAAGTTGAGTTGGAAATGGGCAAAAACTC
ATGTCACCACTCAGTGCTCGCCTCACATCGACCCGTGTGCAATGAAAGCT
TCGAGATTTACTCTGCACTGCGTCAGCTTCTGGATGCTACTGTTAGAATT
TCAAGCTTGCGTTGCTATTAGTAGCGGGCCTCTTGAGCCAGGTATCGAGC
GCCGATGCGACATTTTTGCTTACTTCAATTTCATTGTTGCTCCCTTACAG
GTCGACGGTAGCCCACGAAGGCACACCATTTCTAATACATTGGGAATGAC
AACCGGCCTCCAATACACCGGGTCGCACGCAGCTAGTTGAGCGTTCAGTC
CCTTTCCTCTACCTCTCCGGTTTCCTCCATCAAATATTTTACGAGGGCTC
CTTGATGCTACCCCGTGCTCCTTGTTGGAATGTATTCTTCCCGTCGAATG
ACATGTGAGTGCTTTCGTGCCCCCCATCTCGCGCTCATTCAGGTCGCGTC
TTCGAAAGCGTCGTCGCCTATTCCGGGCATTTCGTGTGCTTTCACGTCCT
TCTGGGCCTGGCCTTGCTGTCCCATATCGTCGTGACGGTGAGCGACCGAA
CAATCATTACTGTAGGTACATGCAGCGGTCGGTCGTGTGTTGGTTTCCCG
GAAGATTCCGTTCGCAAGTCACAACCGAATCGTGTGGCACCACTTCTTGG
TTCCGCGGAAGCCTACTGGAGGCACATGAACAATGGCCGATCTTGTGGCG
AATTCCCGCGGTAAAACTGGAGCCGTTCAATACAAACGATACACCGACCA
TTGAGTATATCGTGTGGGCTCTTAGCTGAGGCATGCCGGTAGACACGGAC
GACAATTCTGTTGTACATGATCGGCCCATGAGAAAGGATGCTCCTGGGAG
GTGAGAACAGAGGTCCACGGGTGGTACCAGCTGTGTTCGGTGACGATGGT
GTCTTCGCGGTACGAGTGGTACATTTACCATCTCAGGATAAGGTATACGC
CTGGCAAATGCTGAATTTCATGGAATTCTAGTGCTAGGAGTGTGTATTTG
CAACCCTGGGCTGCGCATTGGCAGAGTTATCCAGAACTTAAAACTTAAAA
GGGTGAAGTTCATCTAACTTCGAACTTCAAGTACTGAGATTCGGTGGAGC
AGCACGCACAAGGGAAAGACAGTAGAACGCTCTGTGAAGCTTACCTAACA
CCATCAATGTCTTACTTCGGGTCGTCGAGCGGCGTATCCCTTGGGCACCC
GGCGTGATGACATGTCTCACACCCACACCAGAACATTGTCTACAACAGGA
AAGAATAAGTTATGTCGAAGGACTTTCGGCCCAAGTGCGGACTCTCTTAG
CCGGCTAAGTCGCGCGAAAGATCAAGGGCAAATATATTGTTGTGCAAAGA
GCCGAAAGATCAGCACGGCAGCCAGAGGTGTTAAAGACCAGTGAGACGTC
CCACCAGGGAAAGGGGTCGTTTCCGCCGTGGTAGGACTGACCTCCCGCTT
CTTAGGAGGAACTTCGTGGGTAGCCCCAAGCAGCAGAAGTTGACATGGTG
ATGGTGATGTACCGAGCTTAAACTGTAGGTGCAAGGTAAACGGGTTCTTT
GCAGATGGTAAATGGGCAGAAACGAAATCTGATCTGCTCTGACGAGCGCG
TTGAAAATGAACACAAAACGTTACTTCGTTGATGTGCACTAGCAGGTGTC
GGACCCGGGTTTTCTGCCTCGTGGAAACATCACGCTGGGTGGTGCTCATG
AGGGCGGGCGGTGGTGTGAGCGCTGCGAACAACCAAAACCTCCAAGGTGA
GTGACATCATTCGATTCCCTCCTTTACGTTGCCAGTGTGTGATGTTCATG
CTCACTGCTGTGTCCCCGGCCACGCGTTGGTTGTCTTGCTCTAAGGCACA
CGTTGCCCCACTTCCTCTATCCATGGACGCACAAGCGTGGTCCTCTAATT
TGCGGAGTCTCGTTGATCGAAGCGCTCAGGCACCTCATTATATCAACACG
GTGCCAACTTCCCCATCCCCATTCGTCCCCGTCCCTGTTCTTGCAAAGAG
CTCACCACTGCGAAAGGTGCGGCCGATGCGTGGCGCGCATGGACCACCAT
TGCTCCTTTGTTGCAAACTGCGTTGGGGCCGGTAACCACAAGCAGATGCT
TCTCTTGCTTCTCTACGCTGCGGTTTGTGCGGCACACGCAACCTATTTGT
ACTTCGGCACATTCCGCCGCAGCAGCCCGGACGGGAAAGGGTTCTTCAAC
ATCGGCAAAGAGCTGCCCACCTGGCGTGCCCTCGACGATGGCTTGTGGCC
GACGGTTACTGTGCTGGTTTTCGTTTGGCTTGCCGTTCTTCTTGCGGTAC
AGCTGTATGGCATAGCCGTTGATGCCGGCATCGTCGACCGATTGCAGGTC
GCGGCGTTGGATCATCGCAACGCAGAAAAAAACGGCATACCGAAAGCTAC
GGCTATGGAGCCTCTGCGGCGAGAACAATGGCTAGAGTGCCCGCCGGGTG
CTGTACGCCCTTGCAGAGCCAAACAAATTTTTCGTCCGCCCCTATTTCCC
GATAGGAACAGGGGCACTGGATTCGGCGCGATACGATACAGTGCTGGTGA
GAATCAGCCAACCGAACATGCGTATCGCCCTGCAACAACTGCGGCCGCCG
GTGCATTCCCAGCTGTGGACTTGGCTCCTCCGCGGGATCCAGGTTGGATG
GCTGATTGCGATGGAGGTGATGGGGCCATTGGGAGAGGTTTTCAACTTTA
TCGGGAGTTGTGGAGGTCGATGAGCGAGGAGATTCTCGGCGAGGGGCCCT
GGCTCTTGTGGTTAGTGCCGACGGCGGCAAGGCTGTCGCCGGAGGCACAG
GAACGCGTTTATTCCACCCATGGATTAGCGAAAAGGCTGTGATGGCCCGC
TGATGGCACAACTGTGCGAACCGCGAGAGAAGACTGGAATTAAAATACAT
GAGCTTGCCAATCGTGAGGATTCCCATGACCCGTGGGTACTCTCGGCTCC
AAGAGGGCAACGACGCTAGAGATAATTTTCCTTCCGTGAAAACAACCGAT
TCAGTGCGGTGGGATGTGAAAAGTAGGCGGTTCTCCCTTCCAGAGATGAC
GTCGATGTACGTCATATTACTGCGGTATGCCCCCCGGCTGCAGCATGAGA
CACGCACACCCGATCTCGACGCTTCTTGTTGACAAAAGTGGAGTGTCAGG
ATTCTACTTGTAGTGTCGACTTTGTCGGCGATGTTCTGCTTTGTCCGACG
AGATGATGGCCTTCCAGGATTGGAATGGCAAATGGACTCTACCGGCGGAT
GACAAAATGCAAATGCGGCATTAATGGCTTGGAATACTCATGGGGAGGTT
CAGAAGACCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig16:2531677..2536386+

>mRNA_P-fluviatile_contig16.2851.1 ID=mRNA_P-fluviatile_contig16.2851.1|Name=mRNA_P-fluviatile_contig16.2851.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3036bp|location=Sequence derived from alignment at P-fluviatile_contig16:2531677..2536386+ (Porterinema fluviatile SAG_2381)
ATGAGCGTCTTGCGGTCTTCGCATATTCTGGTGAACACAACGCCCGATTT
TTCGCCGAATTCGCAACTCCCATATAGTAGTCTGCGAAGGCCCTGGTTCG
CAGTCAGGGCAAATGTAAAGGCGTCAAGGGAGGAAGCTTGTGCTTTTTCC
GAAGGCGGCCTCGCTGTGACGACGGCCACGGCTGTGCAAACCAATACACG
GGCAAAGAGGGACTGGTTGCGAGTGGCGCCCACGCGGCAGTCGTCACAAT
CAGCGCTACGTTATGCGAAAGGCGTTCGAGGAGGCTGTACTGCGAGAGGA
GAAGCTTCTCGTATTCGCAGGGAACGGAGACAGTTGCGGAGGTTCATTTC
CCCGGCGCTGGTGTGATGAGCGTCTTGCGGTCTTCGCATATTCTGGTGAA
CACAACGCCCGATTTTTCGCCGAATTCGCAACTCCCATATAGTAGTCTGC
GAAGGCCCTGGTTCGCAGTCAGGGCAAATGTAAAGGCGTCAAGGGAGGAA
GCTTGTGCTTTTTCCGAAGGCGGCCTCGCTGTGACGACGGCCACGGCTGT
GCAAACCAATACACGGGCAAAGAGGGACTGGTTGCGAGTGGCGCCCACGC
GGCAGTCGTCACAATCAGCGCTACGTTATGCGAAAGGCGTTCGAGGAGGC
TGTACTGCGAGAGGAGAAGCTTCTCGTATTCGCAGGGAACGGAGACAGTT
GCGGAGGTTCATTTCCCCGGCGCTGGTGTGGGTCGTTGCAATCGCGACCG
ACTTTAATCTATGGGCAAGGCAGGCGCCGATATCGATAGCATCAAGAGCC
TGCAGACGCGGAAACGACACAAAATCCGCCGGGTTTGCTTGGGGGTCGTT
GCAATCGCGACCGACTTTAATCTATGGGCAAGGCAGGCGCCGATATCGAT
AGCATCAAGAGCCTGCAGACGCGGAAACGACACAAAATCCGCCGGGTTTG
CTTGGGGTCGCGTCTTCGAAAGCGTCGTCGCCTATTCCGGGCATTTCGTG
TGCTTTCACGTCCTTCTGGGCCTGGCCTTGCTGTCCCATATCGTCGTGAC
GGTCGCGTCTTCGAAAGCGTCGTCGCCTATTCCGGGCATTTCGTGTGCTT
TCACGTCCTTCTGGGCCTGGCCTTGCTGTCCCATATCGTCGTGACGGTGT
CGGACCCGGGTTTTCTGCCTCGTGGAAACATCACGCTGGGTGGTGCTCAT
GAGGGCGGGCGGTGGTGTGAGCGCTGCGAACAACCAAAACCTCCAAGGTG
TCGGACCCGGGTTTTCTGCCTCGTGGAAACATCACGCTGGGTGGTGCTCA
TGAGGGCGGGCGGTGGTGTGAGCGCTGCGAACAACCAAAACCTCCAAGAG
CTCACCACTGCGAAAGGTGCGGCCGATGCGTGGCGCGCATGGACCACCAT
TGCTCCTTTGTTGCAAACTGCGTTGGGGCCGGTAACCACAAGCAGATGCT
TCTCTTGCTTCTCTACGCTGCGGTTTGTGCGGCACACGCAACCTATTTGT
ACTTCGGCACATTCCGCCGCAGCAGCCCGGACGGGAAAGGGTTCTTCAAC
ATCGGCAAAGAGCTGCCCACCTGGCGTGCCCTCGACGATGGCTTGTGGCC
GACGGTTACTGTGCTGGTTTTCGTTTGGCTTGCCGTTCTTCTTGCGGTAC
AGCTGTATGGCATAGCCGTTGATGCCGGCATCGTCGACCGATTGCAGGTC
GCGGCGTTGGATCATCGCAACGCAGAAAAAAACGGCATACCGAAAGCTAC
GGCTATGGAGCCTCTGCGGCGAGAACAATGGCTAGAGTGCCCGCCGGGTG
CTGTACGCCCTTGCAGAGCCAAACAAATTTTTCGTCCGCCCCTATTTCCC
GATAGGAACAGGGGCACTGGATTCGGCGCGATACGATACAGTGCTGGTGA
GAATCAGCCAACCGAACATGCGTATCGCCCTGCAACAACTGCGGCCGCCG
GTGCATTCCCAGCTGTGGACTTGGCTCCTCCGCGGGATCCAGGTTGGATG
GCTGATTGCGATGGAGGTGATGGGGCCATTGGGAGAGGTTTTCAACTTTA
TCGGGAGTTGTGGAGGTCGATGAGCGAGGAGATTCTCGGCGAGGGGCCCT
GGCTCTTGTGGTTAGTGCCGACGGCGGCAAGGCTGTCGCCGGAGGCACAG
GAACGCGTTTATTCCACCCATGGATTAGCGAAAAGGCTGTGAAGCTCACC
ACTGCGAAAGGTGCGGCCGATGCGTGGCGCGCATGGACCACCATTGCTCC
TTTGTTGCAAACTGCGTTGGGGCCGGTAACCACAAGCAGATGCTTCTCTT
GCTTCTCTACGCTGCGGTTTGTGCGGCACACGCAACCTATTTGTACTTCG
GCACATTCCGCCGCAGCAGCCCGGACGGGAAAGGGTTCTTCAACATCGGC
AAAGAGCTGCCCACCTGGCGTGCCCTCGACGATGGCTTGTGGCCGACGGT
TACTGTGCTGGTTTTCGTTTGGCTTGCCGTTCTTCTTGCGGTACAGCTGT
ATGGCATAGCCGTTGATGCCGGCATCGTCGACCGATTGCAGGTCGCGGCG
TTGGATCATCGCAACGCAGAAAAAAACGGCATACCGAAAGCTACGGCTAT
GGAGCCTCTGCGGCGAGAACAATGGCTAGAGTGCCCGCCGGGTGCTGTAC
GCCCTTGCAGAGCCAAACAAATTTTTCGTCCGCCCCTATTTCCCGATAGG
AACAGGGGCACTGGATTCGGCGCGATACGATACAGTGCTGGTGAGAATCA
GCCAACCGAACATGCGTATCGCCCTGCAACAACTGCGGCCGCCGGTGCAT
TCCCAGCTGTGGACTTGGCTCCTCCGCGGGATCCAGGTTGGATGGCTGAT
TGCGATGGAGGTGATGGGGCCATTGGGAGAGGTTTTCAACTTTATCGGGA
GTTGTGGAGGTCGATGAGCGAGGAGATTCTCGGCGAGGGGCCCTGGCTCT
TGTGGTTAGTGCCGACGGCGGCAAGGCTGTCGCCGGAGGCACAGGAACGC
GTTTATTCCACCCATGGATTAGCGAAAAGGCTGTGA
back to top