mRNA_P-fluviatile_contig16.2830.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2830.1
Unique NamemRNA_P-fluviatile_contig16.2830.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:2355391..2356681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size417
Cds size417
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.2572687-CDS-P-fluviatile_contig16:2355390..23557651622815678.2572687-CDS-P-fluviatile_contig16:2355390..2355765Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2355391..2355765 -
1693562883.6585689-CDS-P-fluviatile_contig16:2355390..23557651693562883.6585689-CDS-P-fluviatile_contig16:2355390..2355765Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2355391..2355765 -
1622815678.2704623-CDS-P-fluviatile_contig16:2356639..23566811622815678.2704623-CDS-P-fluviatile_contig16:2356639..2356681Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2356640..2356681 -
1693562883.6754055-CDS-P-fluviatile_contig16:2356639..23566811693562883.6754055-CDS-P-fluviatile_contig16:2356639..2356681Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2356640..2356681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2830.1prot_P-fluviatile_contig16.2830.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 2355391..2356681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2830.1

>prot_P-fluviatile_contig16.2830.1 ID=prot_P-fluviatile_contig16.2830.1|Name=mRNA_P-fluviatile_contig16.2830.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=139bp
DESLEFREYLLGIERKIIGLALKNVLGRDFFCVVFTARPPSAQALYIQVS
LPYADGERFRGRRLKTDATPPLLLGFHSTRKISPRYLAPYEAKYMTAHKK
RSHSISSFRFFVGACSRVYPACMTFFVFKLCTVNYGVFP
back to top

mRNA from alignment at P-fluviatile_contig16:2355391..2356681-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2830.1 ID=mRNA_P-fluviatile_contig16.2830.1|Name=mRNA_P-fluviatile_contig16.2830.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1291bp|location=Sequence derived from alignment at P-fluviatile_contig16:2355391..2356681- (Porterinema fluviatile SAG_2381)
GACGAGAGCTTGGAGTTTCGAGAGTATTTGCTTGGGATAGAGGTGAGAGA
GGAGAAAGAGAGGCGAAAGGGAGAATAAGCGTGAGGAAAGGGCAAAGAAT
GCAGCAAGTAGATAAGAGCGACCCTGCGATGATAGTCGAGAGTCGAGCGA
GAGATTGGAGTACGTGCTTCGCCCCAAGAGTGCAGCCTTTTTTGTGCGAT
TTGGTTCATGAACCCCAATCCCTGCTGCTGCGCCAAGTTTTCACGGAGAG
AGCGCGTGCTGCACTCTCGTGGCACAAAATCACGTCTAGCTTGCTCGACT
TTGCGCGCAATGAGCTCGCGGATGCATGCAAGCAAGGTGCTGTGCCGTAA
GTAAAAGTGAGGCGAGCGCTGCGTTCTCCGAAGGGTGCGTCCTTGTTCTT
AGTTGTGCGCGTGCTTCAGAAAATCTCCTGCCCATGTTGCGTACGGCTGC
GAAGAAAGCTCGCTAGTGTTGCGCTTTACTGCAAGGATGGCGACACTTGA
GCCAAGCATATTTGACTGGATCTGTCTCGCCCTTGAATCCAGAGAGAGAG
ATAGAGAAAGCGAGAGTCAGCACGAGGAACGCATTATGTGTGCTTTGCTC
TGTACACGTTTTCGAACGAAAGTATTTCCGGTGTCTGCGAGACGGTGGTG
CAGCCCAAATCCTGCTGATGATTTCTGCCTCTGTCTCTCTGTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGCTCTTCACTG
CGTCATCGGGTGGCAGCGAAAAATCATTGGTCTGGCTTTAAAAAATGTGC
TCGGCCGAGATTTTTTCTGCGTTGTCTTCACAGCACGACCCCCCTCCGCT
CAAGCCCTGTACATCCAAGTGTCCTTACCCTATGCTGACGGGGAACGATT
CCGTGGTCGCAGGCTAAAAACAGATGCGACCCCCCCCTTACTGTTGGGGT
TCCACTCTACAAGAAAAATCAGTCCCAGATATCTAGCACCATACGAAGCG
AAATATATGACAGCACACAAAAAGCGAAGCCACTCAATATCCTCCTTTCG
ATTTTTCGTGGGCGCATGCAGCCGAGTCTATCCAGCATGCATGACGTTTT
TCGTTTTCAAGTTATGTACCGTAAACTACGGAGTTTTCCCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig16:2355391..2356681-

>mRNA_P-fluviatile_contig16.2830.1 ID=mRNA_P-fluviatile_contig16.2830.1|Name=mRNA_P-fluviatile_contig16.2830.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=834bp|location=Sequence derived from alignment at P-fluviatile_contig16:2355391..2356681- (Porterinema fluviatile SAG_2381)
GACGAGAGCTTGGAGTTTCGAGAGTATTTGCTTGGGATAGAGGACGAGAG
CTTGGAGTTTCGAGAGTATTTGCTTGGGATAGAGCGAAAAATCATTGGTC
TGGCTTTAAAAAATGTGCTCGGCCGAGATTTTTTCTGCGTTGTCTTCACA
GCACGACCCCCCTCCGCTCAAGCCCTGTACATCCAAGTGTCCTTACCCTA
TGCTGACGGGGAACGATTCCGTGGTCGCAGGCTAAAAACAGATGCGACCC
CCCCCTTACTGTTGGGGTTCCACTCTACAAGAAAAATCAGTCCCAGATAT
CTAGCACCATACGAAGCGAAATATATGACAGCACACAAAAAGCGAAGCCA
CTCAATATCCTCCTTTCGATTTTTCGTGGGCGCATGCAGCCGAGTCTATC
CAGCATGCATGACGTTTTTCGTTTTCAAGTTATGTACCGTAAACTACGGA
GTTTTCCCCCGAAAAATCATTGGTCTGGCTTTAAAAAATGTGCTCGGCCG
AGATTTTTTCTGCGTTGTCTTCACAGCACGACCCCCCTCCGCTCAAGCCC
TGTACATCCAAGTGTCCTTACCCTATGCTGACGGGGAACGATTCCGTGGT
CGCAGGCTAAAAACAGATGCGACCCCCCCCTTACTGTTGGGGTTCCACTC
TACAAGAAAAATCAGTCCCAGATATCTAGCACCATACGAAGCGAAATATA
TGACAGCACACAAAAAGCGAAGCCACTCAATATCCTCCTTTCGATTTTTC
GTGGGCGCATGCAGCCGAGTCTATCCAGCATGCATGACGTTTTTCGTTTT
CAAGTTATGTACCGTAAACTACGGAGTTTTCCCC
back to top