mRNA_P-fluviatile_contig16.2810.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2810.1
Unique NamemRNA_P-fluviatile_contig16.2810.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:2120636..2121483 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size848
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2810.1prot_P-fluviatile_contig16.2810.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 2120711..2121157 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.0225968-UTR-P-fluviatile_contig16:2120635..21207101622815680.0225968-UTR-P-fluviatile_contig16:2120635..2120710Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2120636..2120710 +
1693562885.0940142-UTR-P-fluviatile_contig16:2120635..21207101693562885.0940142-UTR-P-fluviatile_contig16:2120635..2120710Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2120636..2120710 +
1622815680.0472097-UTR-P-fluviatile_contig16:2121157..21214831622815680.0472097-UTR-P-fluviatile_contig16:2121157..2121483Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2121158..2121483 +
1693562885.1146355-UTR-P-fluviatile_contig16:2121157..21214831693562885.1146355-UTR-P-fluviatile_contig16:2121157..2121483Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2121158..2121483 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815680.0347703-CDS-P-fluviatile_contig16:2120710..21211571622815680.0347703-CDS-P-fluviatile_contig16:2120710..2121157Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2120711..2121157 +
1693562885.1036434-CDS-P-fluviatile_contig16:2120710..21211571693562885.1036434-CDS-P-fluviatile_contig16:2120710..2121157Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2120711..2121157 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2810.1

>prot_P-fluviatile_contig16.2810.1 ID=prot_P-fluviatile_contig16.2810.1|Name=mRNA_P-fluviatile_contig16.2810.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=149bp
MRRSTEPFLLPPPPTLHTAKIVVVSWEVDGGCWTVGPPVSWMPGEGTTVG
GPSSEDPELVAVGLWVVPCGVESTSMWSPLGLVAVVVDMYWGVCATTEAL
PLVVARVPGVEDSGACVRTVLNLCHQRLGLVGTTWSSWRACRSPPPSA*
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mRNA from alignment at P-fluviatile_contig16:2120636..2121483+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2810.1 ID=mRNA_P-fluviatile_contig16.2810.1|Name=mRNA_P-fluviatile_contig16.2810.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=848bp|location=Sequence derived from alignment at P-fluviatile_contig16:2120636..2121483+ (Porterinema fluviatile SAG_2381)
GGTTGCTGGTGGGGGGGGGCGGGAGCCTGCTGCGCGGCAGCGCTCCGCGT
GCGCGACCTAATAGTTCTCGTTGAGATGCGGCGATCGACAGAACCATTCC
TACTCCCGCCTCCTCCGACCCTCCATACTGCGAAAATCGTCGTCGTCTCC
TGGGAAGTCGATGGGGGCTGTTGGACGGTCGGTCCCCCAGTTTCCTGGAT
GCCAGGAGAAGGGACAACTGTTGGAGGACCTTCTTCCGAGGATCCGGAGT
TAGTGGCTGTCGGATTGTGGGTAGTCCCCTGTGGTGTCGAATCCACTTCC
ATGTGGTCTCCTCTTGGGCTGGTTGCCGTCGTCGTCGATATGTACTGGGG
TGTCTGTGCGACAACGGAAGCTCTTCCGTTGGTTGTTGCAAGGGTTCCCG
GTGTCGAAGATTCCGGGGCTTGTGTACGAACAGTACTGAACCTGTGCCAC
CAACGTCTGGGTCTTGTAGGCACCACTTGGTCCTCTTGGCGGGCCTGTCG
CTCCCCCCCCCCATCTGCGTAGTTCCTGCCGTTCGCGTTGTAGGAGACTC
ACCCCTCCTGCTCGGTCTCGCGGGCATCGGTGTGAACCGTTCCTGTCTTG
TCTCTCGCCGGTTGTTGGGCCGCGAAATACCGGCCCCGGACGAGCTCGCT
GTGGGAGAGGCGGAGCTTGTTCGGACGTCCCTCCCGTATTTACTATTCCC
CTGGTCCGCGCAGGAATAGAAGCTCCGACAGATGCAGCGGTCCTAGAGTG
TCCTCGCCCTGCCGAGGTCATCGGCGGTGAGGATCGTCCTCGCTGGCCTG
ATCCGGCTACGACTCCATCCTGAACAGGGAACCTCATCATCTGCCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:2120636..2121483+

>mRNA_P-fluviatile_contig16.2810.1 ID=mRNA_P-fluviatile_contig16.2810.1|Name=mRNA_P-fluviatile_contig16.2810.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=894bp|location=Sequence derived from alignment at P-fluviatile_contig16:2120636..2121483+ (Porterinema fluviatile SAG_2381)
ATGCGGCGATCGACAGAACCATTCCTACTCCCGCCTCCTCCGACCCTCCA
TACTGCGAAAATCGTCGTCGTCTCCTGGGAAGTCGATGGGGGCTGTTGGA
CGGTCGGTCCCCCAGTTTCCTGGATGCCAGGAGAAGGGACAACTGTTGGA
GGACCTTCTTCCGAGGATCCGGAGTTAGTGGCTGTCGGATTGTGGGTAGT
CCCCTGTGGTGTCGAATCCACTTCCATGTGGTCTCCTCTTGGGCTGGTTG
CCGTCGTCGTCGATATGTACTGGGGTGTCTGTGCGACAACGGAAGCTCTT
CCGTTGGTTGTTGCAAGGGTTCCCGGTGTCGAAGATTCCGGGGCTTGTGT
ACGAACAGTACTGAACCTGTGCCACCAACGTCTGGGTCTTGTAGGCACCA
CTTGGTCCTCTTGGCGGGCCTGTCGCTCCCCCCCCCCATCTGCGTAGATG
CGGCGATCGACAGAACCATTCCTACTCCCGCCTCCTCCGACCCTCCATAC
TGCGAAAATCGTCGTCGTCTCCTGGGAAGTCGATGGGGGCTGTTGGACGG
TCGGTCCCCCAGTTTCCTGGATGCCAGGAGAAGGGACAACTGTTGGAGGA
CCTTCTTCCGAGGATCCGGAGTTAGTGGCTGTCGGATTGTGGGTAGTCCC
CTGTGGTGTCGAATCCACTTCCATGTGGTCTCCTCTTGGGCTGGTTGCCG
TCGTCGTCGATATGTACTGGGGTGTCTGTGCGACAACGGAAGCTCTTCCG
TTGGTTGTTGCAAGGGTTCCCGGTGTCGAAGATTCCGGGGCTTGTGTACG
AACAGTACTGAACCTGTGCCACCAACGTCTGGGTCTTGTAGGCACCACTT
GGTCCTCTTGGCGGGCCTGTCGCTCCCCCCCCCCATCTGCGTAG
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