mRNA_P-fluviatile_contig16.2807.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2807.1
Unique NamemRNA_P-fluviatile_contig16.2807.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:2097647..2098090 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2807.1prot_P-fluviatile_contig16.2807.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 2097691..2098041 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.928705-UTR-P-fluviatile_contig16:2097646..20976901622815679.928705-UTR-P-fluviatile_contig16:2097646..2097690Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2097647..2097690 +
1693562884.799898-UTR-P-fluviatile_contig16:2097646..20976901693562884.799898-UTR-P-fluviatile_contig16:2097646..2097690Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2097647..2097690 +
1622815679.9488385-UTR-P-fluviatile_contig16:2098041..20980901622815679.9488385-UTR-P-fluviatile_contig16:2098041..2098090Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2098042..2098090 +
1693562885.0719452-UTR-P-fluviatile_contig16:2098041..20980901693562885.0719452-UTR-P-fluviatile_contig16:2098041..2098090Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 2098042..2098090 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.939243-CDS-P-fluviatile_contig16:2097690..20980411622815679.939243-CDS-P-fluviatile_contig16:2097690..2098041Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2097691..2098041 +
1693562884.8077815-CDS-P-fluviatile_contig16:2097690..20980411693562884.8077815-CDS-P-fluviatile_contig16:2097690..2098041Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 2097691..2098041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2807.1

>prot_P-fluviatile_contig16.2807.1 ID=prot_P-fluviatile_contig16.2807.1|Name=mRNA_P-fluviatile_contig16.2807.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=117bp
MCFFFSCLMCERKGFFLLFNGKKLAHERQQYQLVATVDPTQFLRCTYFVG
LPCVVQPHVQGVAAVFCSCVRNGPSDLRNTVAPKIWSPFPVHRCVTSMGP
KYKASSAAAEPWMYAT*
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mRNA from alignment at P-fluviatile_contig16:2097647..2098090+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2807.1 ID=mRNA_P-fluviatile_contig16.2807.1|Name=mRNA_P-fluviatile_contig16.2807.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=444bp|location=Sequence derived from alignment at P-fluviatile_contig16:2097647..2098090+ (Porterinema fluviatile SAG_2381)
AAGTCCACCGAGAAAGGAGAGTTTCCGAAGGAGTGTCGTGTGTTATGTGC
TTTTTTTTTTCGTGCCTAATGTGTGAGAGAAAGGGCTTCTTTCTTTTATT
CAATGGAAAGAAATTGGCTCATGAAAGACAGCAGTACCAGCTGGTTGCAA
CGGTAGATCCGACCCAGTTCCTGAGGTGCACGTATTTCGTAGGCTTGCCA
TGTGTTGTGCAACCACACGTCCAGGGTGTTGCTGCGGTGTTTTGTTCGTG
TGTGAGAAATGGTCCAAGTGACCTAAGAAATACCGTCGCTCCCAAAATCT
GGAGTCCCTTCCCCGTCCACAGATGCGTCACATCAATGGGGCCCAAATAC
AAGGCTTCGTCCGCTGCTGCTGAACCGTGGATGTATGCAACCTAACCGCT
GATGCTGTTTTTTTTTTCCCCCTCGACAGAAAATTGTTTTCTCC
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:2097647..2098090+

>mRNA_P-fluviatile_contig16.2807.1 ID=mRNA_P-fluviatile_contig16.2807.1|Name=mRNA_P-fluviatile_contig16.2807.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig16:2097647..2098090+ (Porterinema fluviatile SAG_2381)
ATGTGCTTTTTTTTTTCGTGCCTAATGTGTGAGAGAAAGGGCTTCTTTCT
TTTATTCAATGGAAAGAAATTGGCTCATGAAAGACAGCAGTACCAGCTGG
TTGCAACGGTAGATCCGACCCAGTTCCTGAGGTGCACGTATTTCGTAGGC
TTGCCATGTGTTGTGCAACCACACGTCCAGGGTGTTGCTGCGGTGTTTTG
TTCGTGTGTGAGAAATGGTCCAAGTGACCTAAGAAATACCGTCGCTCCCA
AAATCTGGAGTCCCTTCCCCGTCCACAGATGCGTCACATCAATGGGGCCC
AAATACAAGGCTTCGTCCGCTGCTGCTGAACCGTGGATGTATGCAACCTA
AATGTGCTTTTTTTTTTCGTGCCTAATGTGTGAGAGAAAGGGCTTCTTTC
TTTTATTCAATGGAAAGAAATTGGCTCATGAAAGACAGCAGTACCAGCTG
GTTGCAACGGTAGATCCGACCCAGTTCCTGAGGTGCACGTATTTCGTAGG
CTTGCCATGTGTTGTGCAACCACACGTCCAGGGTGTTGCTGCGGTGTTTT
GTTCGTGTGTGAGAAATGGTCCAAGTGACCTAAGAAATACCGTCGCTCCC
AAAATCTGGAGTCCCTTCCCCGTCCACAGATGCGTCACATCAATGGGGCC
CAAATACAAGGCTTCGTCCGCTGCTGCTGAACCGTGGATGTATGCAACCT
AA
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