mRNA_P-fluviatile_contig16.2797.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2797.1
Unique NamemRNA_P-fluviatile_contig16.2797.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig16.2797.1 vs. uniprot
Match: D7FSD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD4_ECTSI)

HSP 1 Score: 472 bits (1214), Expect = 8.720e-160
Identity = 243/425 (57.18%), Postives = 297/425 (69.88%), Query Frame = 2 
Query:  164 LLSCAVLALLMYFYSKPAAPPPVHGNGR----------------GEGGLYGDRDTLHTF---SGVPVGGWNGTVAPGDRYRWEIGAGWAANVLSEDLEDWAPVGPDLQGVLPRTAASPEAQPMVMVGWGFGSTKLTLYTYRALESILHVYPAARVRVLNSLGPRYAYFYKWANIIALTQFQKYSKRGYDVKVEIFFGKMYARIKMNGRMIPGHQWWQRHENSLLFGKGMQIKQFQTTQDAIPDVYVTIFLALLELYKHGGIYVDLTTFFVRPLPADRDGFVAGGEGPGPGGPT------------GDCSMLTSRNRLQRPFVMQYRAPQHPVVACVLGEYDVNTSVLNECVVLTKATDGKGGMDCVLDALERCTEKLGMQNDLRLAGVVEWHGCSDETARSYASVSSTGTSGADVLKRVAAIPPP 1345
            +LSC +L +L+Y+ S                             G  G  G R ++  +    GV   G NGT A  +R RW+  AGW   V  +DLE+WAP+GPD  G LPRT A+P  QP V+VGWGFG+ KLTLY YRALESI+HVYP ARVRV+  +GPR+A+FYKWANI+ALTQFQKYSKRGYDVKVEI+FGK    +K+NGRMIPGH+WW+RHE++LL+G+GM+I  FQ  ++A+PD YVT++LALLELYK GGIYVDLTTFFVRPLPA  DGFVAGGEGPG  G               DCS+ TS +RL RP VMQYRAPQHPVV CVL EYD+  S +NEC+ L+K  DG GG++CVL+ALE CTE  G+ NDLR AGVV WHGC+  TA+SY + S +G SGAD+L+ +  IPPP
Sbjct:    1 MLSCIILTVLVYYNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGRXGDNGGRASIEEYPRGGGVEFLGRNGT-ALSERERWQYEAGWG-EVPLDDLEEWAPLGPDPIGCLPRTTANPAGQPKVLVGWGFGAPKLTLYGYRALESIIHVYPGARVRVIT-VGPRFAFFYKWANILALTQFQKYSKRGYDVKVEIYFGKALGTVKLNGRMIPGHKWWRRHEDTLLYGQGMKISTFQAVEEAVPDAYVTVYLALLELYKFGGIYVDLTTFFVRPLPAGIDGFVAGGEGPGSAGXXXXXXXXXXXXXXSDCSVPTSNDRLHRPLVMQYRAPQHPVVECVLSEYDLEVSPMNECIALSK-NDGYGGINCVLEALETCTENRGLTNDLREAGVVAWHGCNSATAKSYTAPSRSGASGADILEGLTGIPPP 421
[Close]
BLAST of mRNA_P-fluviatile_contig16.2797.1 vs. uniprot
Match: A0A6H5JIY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY4_9PHAE)

HSP 1 Score: 345 bits (884), Expect = 6.370e-113
Identity = 179/309 (57.93%), Postives = 218/309 (70.55%), Query Frame = 2 
Query:  164 LLSCAVLALLMYFYSKPAAPPPVHGNGRGEGGLY------GDRDTLHTF---SGVPVGGWNGTVAPGDRYRWEIGAGWAANVLSEDLEDWAPVGPDLQGVLPRTAASPEAQPMVMVGWGFGSTKLTLYTYRALESILHVYPAARVRVLNSLGPRYAYFYKWANIIALTQFQKYSKRGYDVKVEIFFGKMYARIKMNGRMIPGHQWWQRHENSLLFGKGMQIKQFQTTQDAIPDVYVTIFLALLELYKHGGIYVDLTTFFVRPLPADRDGFVAGGEGPGPGGPTG-------DCSMLTSRNRLQRPFVMQ 1042
            +LSC +L +L Y+ S+      V                 G R ++  +    GV   G NGT A  +R RW+  AGW   V  +DLE+WAP+GPD  G LPRT A+P  QP V+VGWGFG+ KLTLY YRALESI+HVYP ARVRV+  +GPR+A+FYKWANI+ALTQFQKYSKRGYDVKVEI+FGK  A +K+NGRMIPGH+WW+RHE++LL+G+GM++  FQ  QDA+PD Y+T++LALLELYK GGIYVDLTTFFVRPLP   DGFVAGGEGPG             DCS+ TS +RL RP VMQ
Sbjct:    1 MLSCIILTVLAYYGSRVNPSTSVGSXXXXXXXXXXXXXXEGGRASIEEYPRGGGVEFLGRNGT-ALSERERWQYEAGWG-EVPLDDLEEWAPLGPDPIGCLPRTTANPAGQPKVLVGWGFGAPKLTLYGYRALESIMHVYPGARVRVIT-VGPRFAFFYKWANILALTQFQKYSKRGYDVKVEIYFGKALATVKLNGRMIPGHKWWRRHEDTLLYGQGMKMSTFQAVQDAVPDAYITVYLALLELYKSGGIYVDLTTFFVRPLPTGLDGFVAGGEGPGSAXXXXXXXXDGRDCSVPTSNDRLHRPLVMQ 306
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSD4_ECTSI8.720e-16057.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIY4_9PHAE6.370e-11357.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:1977611..1988831 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001040.1
Exons12
Model size1474
Cds size1449
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.926945-CDS-P-fluviatile_contig16:1977610..19776331622815703.926945-CDS-P-fluviatile_contig16:1977610..1977633Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1977611..1977633 -
1693562996.8752868-CDS-P-fluviatile_contig16:1977610..19776331693562996.8752868-CDS-P-fluviatile_contig16:1977610..1977633Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1977611..1977633 -
1622815703.9397972-CDS-P-fluviatile_contig16:1978194..19783551622815703.9397972-CDS-P-fluviatile_contig16:1978194..1978355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1978195..1978355 -
1693562996.8840349-CDS-P-fluviatile_contig16:1978194..19783551693562996.8840349-CDS-P-fluviatile_contig16:1978194..1978355Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1978195..1978355 -
1622815703.951617-CDS-P-fluviatile_contig16:1978615..19787071622815703.951617-CDS-P-fluviatile_contig16:1978615..1978707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1978616..1978707 -
1693562996.8932703-CDS-P-fluviatile_contig16:1978615..19787071693562996.8932703-CDS-P-fluviatile_contig16:1978615..1978707Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1978616..1978707 -
1622815703.9677422-CDS-P-fluviatile_contig16:1979160..19793161622815703.9677422-CDS-P-fluviatile_contig16:1979160..1979316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1979161..1979316 -
1693562996.9030254-CDS-P-fluviatile_contig16:1979160..19793161693562996.9030254-CDS-P-fluviatile_contig16:1979160..1979316Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1979161..1979316 -
1622815703.9800994-CDS-P-fluviatile_contig16:1979998..19802291622815703.9800994-CDS-P-fluviatile_contig16:1979998..1980229Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1979999..1980229 -
1693562996.912796-CDS-P-fluviatile_contig16:1979998..19802291693562996.912796-CDS-P-fluviatile_contig16:1979998..1980229Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1979999..1980229 -
1622815703.997462-CDS-P-fluviatile_contig16:1981588..19817201622815703.997462-CDS-P-fluviatile_contig16:1981588..1981720Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1981589..1981720 -
1693562996.923568-CDS-P-fluviatile_contig16:1981588..19817201693562996.923568-CDS-P-fluviatile_contig16:1981588..1981720Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1981589..1981720 -
1622815704.0119517-CDS-P-fluviatile_contig16:1982797..19828891622815704.0119517-CDS-P-fluviatile_contig16:1982797..1982889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1982798..1982889 -
1693562996.9407086-CDS-P-fluviatile_contig16:1982797..19828891693562996.9407086-CDS-P-fluviatile_contig16:1982797..1982889Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1982798..1982889 -
1622815704.0237675-CDS-P-fluviatile_contig16:1984292..19843061622815704.0237675-CDS-P-fluviatile_contig16:1984292..1984306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1984293..1984306 -
1693562996.9520893-CDS-P-fluviatile_contig16:1984292..19843061693562996.9520893-CDS-P-fluviatile_contig16:1984292..1984306Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1984293..1984306 -
1622815704.0339417-CDS-P-fluviatile_contig16:1984731..19848731622815704.0339417-CDS-P-fluviatile_contig16:1984731..1984873Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1984732..1984873 -
1693562996.962534-CDS-P-fluviatile_contig16:1984731..19848731693562996.962534-CDS-P-fluviatile_contig16:1984731..1984873Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1984732..1984873 -
1622815704.043845-CDS-P-fluviatile_contig16:1985763..19858481622815704.043845-CDS-P-fluviatile_contig16:1985763..1985848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1985764..1985848 -
1693562996.972839-CDS-P-fluviatile_contig16:1985763..19858481693562996.972839-CDS-P-fluviatile_contig16:1985763..1985848Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1985764..1985848 -
1622815704.0532062-CDS-P-fluviatile_contig16:1986913..19871021622815704.0532062-CDS-P-fluviatile_contig16:1986913..1987102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1986914..1987102 -
1693562996.9839408-CDS-P-fluviatile_contig16:1986913..19871021693562996.9839408-CDS-P-fluviatile_contig16:1986913..1987102Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1986914..1987102 -
1622815704.0627377-CDS-P-fluviatile_contig16:1988674..19888061622815704.0627377-CDS-P-fluviatile_contig16:1988674..1988806Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1988675..1988806 -
1693562997.0004241-CDS-P-fluviatile_contig16:1988674..19888061693562997.0004241-CDS-P-fluviatile_contig16:1988674..1988806Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1988675..1988806 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.0775473-UTR-P-fluviatile_contig16:1988806..19888311622815704.0775473-UTR-P-fluviatile_contig16:1988806..1988831Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1988807..1988831 -
1693562997.008488-UTR-P-fluviatile_contig16:1988806..19888311693562997.008488-UTR-P-fluviatile_contig16:1988806..1988831Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1988807..1988831 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2797.1prot_P-fluviatile_contig16.2797.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 1977611..1988806 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2797.1

>prot_P-fluviatile_contig16.2797.1 ID=prot_P-fluviatile_contig16.2797.1|Name=mRNA_P-fluviatile_contig16.2797.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=483bp
MHRNLSASRRPPRPSVRRRRRVVPSSGSSQPHGRGATASNPITKVLLLSC
AVLALLMYFYSKPAAPPPVHGNGRGEGGLYGDRDTLHTFSGVPVGGWNGT
VAPGDRYRWEIGAGWAANVLSEDLEDWAPVGPDLQGVLPRTAASPEAQPM
VMVGWGFGSTKLTLYTYRALESILHVYPAARVRVLNSLGPRYAYFYKWAN
IIALTQFQKYSKRGYDVKVEIFFGKMYARIKMNGRMIPGHQWWQRHENSL
LFGKGMQIKQFQTTQDAIPDVYVTIFLALLELYKHGGIYVDLTTFFVRPL
PADRDGFVAGGEGPGPGGPTGDCSMLTSRNRLQRPFVMQYRAPQHPVVAC
VLGEYDVNTSVLNECVVLTKATDGKGGMDCVLDALERCTEKLGMQNDLRL
AGVVEWHGCSDETARSYASVSSTGTSGADVLKRVAAIPPPPSTASESGDP
RRSSGQLAPAPGGTRASDDSSAALKGGPATSAG
back to top

mRNA from alignment at P-fluviatile_contig16:1977611..1988831-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2797.1 ID=mRNA_P-fluviatile_contig16.2797.1|Name=mRNA_P-fluviatile_contig16.2797.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=11221bp|location=Sequence derived from alignment at P-fluviatile_contig16:1977611..1988831- (Porterinema fluviatile SAG_2381)
GCCTGGGTTGCACGCAAGTGACAACATGCACCGCAATCTAAGTGCCTCAC
GCAGGCCCCCTAGACCCTCGGTAAGGAGGAGAAGAAGGGTCGTTCCGAGC
AGCGGCAGTAGCCAGCCACATGGTCGAGGTGCAACAGCTTCGAATCCGAT
CACAAAGGTGCGCGGACGTTCGATCCCGAAAGAATAAGGTTTGCGGGTGT
GCACAGCAGAGGGGGAGAGGGCGAGAGCGCTTGACTTGCACACGGCTCTC
ACACGCATCCCTTAAGTACTACGAAAACATCGTGCTTTTTCATTGCTGAG
CTAGAGCATCGTTCTGTTTTCTGGACGCCGCGGCTATGTTGTACTGGAGA
GAAGGGGATTGGAGAGAGTTGGCACGAATGCCGAAGGATCTCCGCACTTG
CTCTCGAGCACATATTTTCGAATCTACGCACAGACAGCAACGTTGCAACG
TCGTTTATTGATCACGCGCTGGATTCATCACTGCTGTACTCTGCAGTTTT
TTTCATCATTTCCCCATGTTGCGCGCCTTCCTCCGCTGCCTGAAGACGGC
ACACATACGTGCTCGTGTGACAAAAAGAGCAAGCCCTTCGTCTCTTGACC
CTTTTCGTGGGAAGACAGCCAGCGGATTTGCGAATTTGAAACGCGAATTT
GCCGATGGATTAGACACACCACCGTGACAGTAGCACGTCAAAGGAGTGGT
GTGGGGGTAGATACACGAGACGTCTATGTGTCCTTCCACACAACGCGAAG
TCAGACTTGATCACGGCGTCGACTGTGTTTTTGTTTGCCGCGAGGGCCGT
CGAGCGGCCCCGGACACTAACACGAGTGGCGGGTGGACCAGGGAAGGAGC
GACATTCGCGTACAGAGACAGAGCCAACGGCGGACAGGCTCGAGAGGGTG
TGGAGGATGCGACGAAAAAACAATGCGGTCGCTGGGTTGCGTGTTTGCTC
TAGATAGAAACAGAAGTTCGGCGTCAGCCCTCTCACGGGACTCATAACGG
GCAACACTGCTCTGTTTGAGTTCGAGTCTCTTCAGAGCTATAGACTGTTG
ATGCTGTTTTGTGCCGCCCCGTTGGTCGACGAGACACGTAAACGTCAGCA
AGACCGGTCATCAACGGTGTAGGCGCTCAAGAATACGACGCAAAACCTTC
ACACACAAACCTGTTTCGTGCGTGCTTCGAGAAACTCGAATAAGAAAGTC
ATCGGGTCTGCCCGACGTACGCTGTGTGTCCGGAAAGTGCAGCTGCATCC
CCCTCCCCCCCGCGTCGAGGGAGGGCTTGTGATCGAACCCGTGTCGCCCG
TTACCTTTTCGACCCACGGAAGAGAGCATCGTGCGCTGATCAGGCGATTC
AGCACCTCGTATGCAAAAAGTTGCACACGAACGCGATGTGTGTCCACACC
GGCCACCTTGTTTCGAGGGCGGCAGATCCAACACAAAAAGTCCAACTATT
AATACAAGTATGTCAAGACTATAGCGCGCACTGTTGCGGTCGGCGTTTCA
TCAACTTGTGACCCACATGAGAAACGTGTGATATGATCGTCTCCATACAG
TGCGCGCCCGCCCCCCCCGATGGTGGCAGTTCCTGCAGAAGTGCCAAGGA
ACGCAGTGATAGGTGGAGGCCGGATCCTTGTTTTGTGCGACATCATGGCC
ACAGTTGTCAATTTTCGATGACGAAAGGCCACAAGATCCCCCTCCGCCGC
CCCCAACACCCACGTGCCGTGCGCGAAAGGTACTGTTGCTGTCCTGCGCG
GTCTTGGCTCTGCTGATGTACTTCTACAGCAAGCCTGCCGCCCCGCCCCC
CGTCCATGGGAACGGCAGGGGAGAGGGTGGGCTATATGGGGACCGGGACA
CCCTGCACACCTTCTCCGGCGTTCCAGTGGGAGGGTGGAACGGCACGGTG
GCCCCGGGGGACAGGTATGTGGTGTCTGGTTGTTTTTTCTTTCAAGTGTC
CATGTTACAATAGGTAGGGCCCAGGGTCACACAAATGCTCTCTTGAAGTT
CCGAAGTTAAACAGGAAGGAGCGAGGGAGGGCACATAAAACAAAAGCGGG
TACACAGGACCAAAGAGGGTACGCCAAATCGTCTGCGCGACGTTTATCTG
TGTCATGCTGTACTTCGCGCATTTGAATAACGGCGTTCGACGCGACGCGA
CGTTACACCACGCAACACGGCGCCAAGCGTTGTGTCCTGGTGAGCATTTA
TTTTTCGACCTGTTTGTTCGTTTCAACTCACCAAGCACGTGCTGTGTCGT
TTTGAACGATTGTGTTCTGGGAGTGTTTTTCGTTCTTCTCTTTGTCCTGC
CGTGCAGTGCCGCTTCTGGTTTCTTTCTCTTTTCCGCCCTGTCGCCTGTC
ACGAGTGCTGCTGCGGTCATGGAACCTGTCGGGCGAGGCTGGAGCTGTGC
TGGCTGGGGTTGTGTTTTTCTCGTTTCCCGCGATTCCTCTCAAACAATCG
ATGGGGGCGGACGATAAACATCAGATAAAGGGGTTCGAACCTCGGTGGTG
GATGCCCCGGACTACCGCTCCACCGCAGCTGCCCGCTGTGAACGCGAAAA
TGGTCGAAAGGTCAAAATCTAGGCTCACACAACGTTTTCGCTCAGTTTAT
GGAGAAGGGTGTGGAAACGCGGTTCTATGTGCAGAGGACGTTCACCTCTG
TGCAATATTGGCACGCTGTTTCTGCTTTGCACCAAGCTGAGTATTCGCCC
CTTCCCAGCCATACCCGGCACACATGAAAGGACCTCCGAGAGCTGTGTTG
GTGGCGCCTCCAGGTGAGGGCAGTACGAGAAGATATATACGACAATTTTC
TCTCAAAGCGGGCGCTCTGTCGTTGATCAACTACCTTATACACACGCCCA
ACCTCTCCGGTGTACCCCCCCCCTCGATTTCCTTGCTGCTTTGTAGATCT
CCTCGTCCATTCATTCACGAAACCACGCTTTTGCTCCTGGCTTCCATGCC
CCCTCCCCCCCCCCCCTGATACCCTCCAGGCAGAGATGGGAAATAGGCGC
AGGATGGGCAGCAAATGTCTTGTCTGAGGACCTCGAGGACTGGGCGCCGG
TCGGGCCGGATTTGCAAGGTAATGCTTAACTTTCCGTCATGGAGCAACTT
GTTTCCCCTTCTCTTGGCTGTATATCAGGCCCCACGTTGTATATCAGACC
CCTTGCAGCAGTACCACGGGTGCTAGACAAAGCGAACCTGAAACCCGCTA
TCATCGGGGTCTAATCCCACTCTCATTTCGTAAGGCAACTAAACCCTTTG
TGAAGAGACTTGCGTATCTCACGCTTATTTCGAATTGTTAGCTCAACTTG
AACCTTGTGTTGCAGAACTTGCGTGCTTTTCTAACATTCATTTTTTTTTT
GTTTTTTCGGTCGACCAGCGTCTTTTATTGTCTGCGCGTCGTCGGCACAT
GTGAAAGTTTTGTTGGAAACAGGGGCGCTTGAGGGTTTTGTGTGATTGCG
TCATCACTCGCGCTTGTGAAACGTGCCTTTGTTCACGCTACGCCGGCTGG
ACCGGATTCGCGAGGTCAGCACTTTATCATATCTTGGAAAACCTTGCTCG
GCCCAATTCGCTCGTTTCTCCGAGGCCTGCTGAACTTGTGTTTGTCCGCG
CGCGCCGTCGGTTTCGACGCGGACGATATTTTTCATTCGAAGATCTCATC
ACGTTTTTTTGCTTGAAAGTTTTGCTGATACACCGTCAGATGCATGGTAT
TCACGAAACCCCACGGGTAAATGCGTGGTACTAATCGAGGCAACTGCGGA
GGTCGAGGCTTTGCACGCGCCGGCGGGGACGTTCGGTCCGTACAAGGATG
CGCCATTCCCTTTTTTTTTCTTGAGGACATCCAAGCTTTCATGTTTTCCG
TCTCGTTGTTTCCGTCGCGGGACATTCGGCGCCGCCGGCTGCCCTCCTGT
CGGTGTTGCACGCTTTTTTTTTCTTGACAACTACCCACCTGTACACGTAC
GCGCGCAGGCGTGCTGCCTCGGACGGCAGCCTCACCGGAGGCGCAGCCGA
TGGTGATGGTGGGGTGGGGGTTCGGGAGCACGAAGCTGACGCTGTACACG
TATCGGGCGCTGGAGAGCATTTTGCACGTGTATCCCGCGGCGCGTGTCAG
GTTCATCACGATAGGCAAGCAGAAACTTTTCTCTCACGTGCTCACCAAGA
CAGTAGTGGTGGATGAGAATGCGTCAAACAGAATCTGCATGCCTTCGATG
AAGGCTTACGGTAATGTGCAGAAATGAATTGGCCTCCCTGGGGCGGTTTT
TGAAGCAGCGCTTTCTGGCGGGCATCGATGCTTGGCGATACATTTCCGAG
AAACCCCGGATGAGAACTTTCCAAATCCGGCGTTTTCGGCCTAAGCACTC
ATCCTGCTGCGGAGGTTTTGGGCGTTGAAGATCTGCCCAGGGGGTGTGTT
CTAATCCGTAAAAGACGGTTCTTGGCCCCTCCCACTCGAGCACTCTTTCG
CGGGGCAAATGCGCATGGTGGGGTTGCTCAAAGGAAGCAGGAAATATGCA
CACGCCTGTAAACTCGAAGGAAAAGAGTGCTGAACTCTTGTTGCATAAAA
ATTGAAGGCGAACCGCAGGTGAAAGTGGGGCAATTAAATACAATACAGTA
GCAAAAAAGCTCCTGGTGTACCTTCTTCCTGTGTGACCCCGGTTGGGCCA
TGCCCACATACGACCGAAAGTCGAAGACTGGCGCAAACGAAAGGGATGAA
AACCACCACCACCGCGACCACAACCACCAAGGGACGCAGGAGAAAAGTAC
GCGCCAAGACATGCTTGCACACCTGCTCGGGACAACAGTATGTTGCGCCA
CCCCGTCGAGCACGCCGAGTCTTTTCGAGAGCATCTTGGAGGATATGGAG
TTACTGGCCGACCGCCGTTTCTTCGCGAACATGACTAAGCGCCATGAGTC
GCGAGTACCAAACAACGTTTGGAGGGCACGAGGTCACCAGACGACGTATC
TCTAGCCTGTACGCTGCAAGCAGTCCAGCATTTTCGCGAAAAATGCAGCC
ATTTCTCTTGGAATCCAAATTTATCGCGAGAAATCCTGCCTTTCTGTGAT
AAAGCCAAAGTGCAGCTGTTCCTGTACAGACCGAGATTGAATCCCGCCTT
CTTGTGAGCAGCCAACTGCGCGCGGAAGGGGGTACATGAGTCGAAGTGGG
CGCACCCTTCGCTGCCTCGATTACACGCCTCGCATATCGATCTTGAAGGC
GGTCATGCTTGCGCGAAATCATTCATTTGTTCATCAATTTTTTGCCTTGT
TTTCTCAGGGGTCATGCTTTCCCCCCCCACACCAGCGCAGCATTTGGCTT
TCAATGCTCGTCTTGTCGGCTATGTTTTCCGTCTGTGCGTGTGGAGTGGA
CAACGATTTTCGCCGGCTCAGCTTTACCCTGTGTCGGTCGCTATCCACAA
CCTGAACATAGCTTTCCTTCAACACACCACCCGGTCGGCGGTCGAAGTAA
TTCTTTCGTGGAGAACTCCAAAGGGTTCCTCTCTCTGCTCCTACCCTCCT
GCGGTACATGCTTCGGGGACTGTCGAAAGTTGCGTTGGGAGTTTTTAGGA
TTCTCCTTCCCTGGCGTGACGAGCGGAAAGAGATTGCAGCTATCGGAAAA
GAATTAGACTGGCGAGTGACAAAGCAATGGGGTTAAGGCATGGACACCAC
AAGCATGTGGGTCACGCCCCTGGTACTCGTCTCAATTTACATGCGTCTTT
TTCGCGTGCACCTGATTCTCGTTCTGTTTACAGCCGAGAGGTAGCTGCAG
TAGTGCACGTGTGTGCCGGGCGTTTTTTACCTGCGCTCGATCGGCACCTG
CACTGCATCGCACTTCAGCCAGCCCTCTGCTGCAGTTGTCTCTCGCGCAC
GTACCCCTGTTCGCCTTGATGATTTATTGCTGTTCACGCATAGCTAAATT
TCCCCGGCGTCGTTGGCGCATGCACCTTATTTTGACCCGGAGTAGGACCG
CGGTACGCCTACTTCTACAAGTGGGCAAACATCATCGCGCTTACGCAATT
CCAGAAGTACAGCAAGAGGGGCTACGATGTCAAGGTGAGAGGCAGAGAAC
CGCTCTCGTTTCCTGTCATTTTTTTTTTTTTCTCGAGATTGACGCTGCAC
GTTTTTGCTCCTTGTGCTCATCAGCAAGAGTCAAGGCGGGAGAAGATGGC
TGGGGCATGTTTAATTCTACAGGCAGGATGTTGTCGCGCCATGTGGAGGA
CAGCGCTGGTGTAGGTAGCCCTGCCAATCGCTCACGTGGTGTTGACCGAG
CTGAATTGCAGTCTAAATTTGGGGTGTCTTTTGTGAGATCTCAAACGGCA
CACGTCTCTTTCCCACACGGCAAAAGAGAAATTCTCCACCGTCCCAGTAG
CAGCACCAATCACCTTCAGCATCTCCAACGCCACGTCGACACAATGGCAA
AAGGAGACCCCACAACACCACCAATATCGCGCAGCTGCCGTTTTTCCGGT
GGCGTATGTTCTTTCTTCCTTCTTTCTTGTTTTAGCAGACATGGCGTTTT
GGTTTGGCTCGCCCGACTCTCTGTACCGGCTAAGTCGGCATCTTCCCACA
AGTCGCAACCTCGTCGTGGCGGCCTTCTCCTTTGCTTGACCGAGGGCGCA
GAGAGATCGAGCCCGACTCCCTTGCGTTGTTTGGGTTGAGTAGTGCCGGT
GCCCGGTATCTTGCGGTTGAAATCAGTTGGCATGAAAGCTCGCTTACATG
CTTGCATCTATGCGGAAGTATTTCCCTCTTCCGAATAGTGCAGTTGCTCT
CTATAGTGCGGGTGAAAATCCGCGTCCCACCCGGGCACTCTAGAGGTCCC
CCTGCTGTAATTTCTCTTTCTCGTATCGAGTGGTCTTTGTTCGCTGTTTG
CGGTGCCTAGGCATGGCAAGACAACTGCGGTATCCTTCGGCACGTGGCCG
AGTTGCGCACGGCACCGCCTCGCTTGGCGGGCATCCCGTGAGCAGCGAAC
ATCCGCGTTTGAACACGAAGCGCCCGGCTCTTGCTCTCGCTCTCTCTGCT
CCTTCCCCGATTTTTGCTGGAAGCTGTGGAAGAGTATCAACTACACGGTA
TCCGTCCAGTTGCGTATATCAAAATTTCCGCCGCTTGTTGGTGTCTTGCT
TGTGTGTCTAGGTGGAAATTTTCTTCGGCAAGATGTATGCACGCATCAAG
ATGAACGGCCGGATGATTCCGGGGCACCAGTGGTGGCAGCGCCACGAGAA
CTCGCTGCTGTTCGGCAAAGGGATGCAAATTAAACAGTTTCAGGTGTGTG
CGTGTGCATGTGCGTGCTTATTTTTGTTCATGTTTAAGTACTACTCCGGA
GTATTTTCGAGGTGCTATTAGTTACGACCAAATCGGAAAAACAGTAATTA
TTTTCTCTTGCGGCATGGTCTTTAGTTTGTTGTTGTTGTTGTCTTCACAT
TAAACCGCATGTCAATGCTAATTGCCAAAATCTAGCAATGACTCTCAGCC
CGTGGTCACGAGAGTGCTAGAGCCACCAGAGGATCTAAAGAACACGCACA
CCCACGTAGTAAAAAAAGAGGTAGTCTACACCAAGCCGAAGATGTACATC
TCAAATCCCTGCAGCAGTACGCGTGCCCAAAACTGAACTACAAGCCCGCC
CACCGTTCGACCACAGCAGTATCACCCTCTCCCTGTCCCACTCTGTACCA
AAGTGGTTTGCCGACTACAGCGTACTGGAGTGCTGTCTTTACAAAACATT
ATCATAGTAGGCGTGGAACAAGAAGCTGGCGGGGCATGGCTGCTGTCTGA
AGTGCTGTCAGAATGCGGCCTCGGACGTGAAGAGAAAAAAACACCAGCCA
AAGCCATCATCGAAATTGGCAATCATCCGAATCTATCCCGCTCATCCGTG
TTAGGCATAGCACTATAACATCGGCACTGACCAAAACAATCGTTCCACAT
TGAGGTGAACATGTAGTGGAGCATGAAATAGCTCAAGGTTAACAGCGAGA
CCTTCAACATTTGATTGCTAAACAACAAATGGTGTGGTTGTCACAAACAC
TACACCCCCTACGCTCGTTATGTTTGCTCCACTTCGGTCCTGACTCCTGT
GTCCCACCGACGTATTATTTCTCATACGGGACGCGCTTGCCGGCAGATCA
AGTGTAAATTTGAGAAATGGCGTCCCATCGGGATATCGAAAGAAACCGTT
CTTCGTGTCGCCAGGCCCTCGTTCTTGTGCGAAGACCTAATGAACGAAGC
TATGGCTCCTTCTCTCGCGCTTGAGTCGGAAGTAATTGTTGTCGCCCCGC
CCCTCCCCCATTATTACGATACGTCGACCTGAGAGGTGGCAGACCTGTGC
ATGTTCGTTTGTCCGGCGTCGACCACGCCAAGCTGGCGGACGAACGGCGA
ATACGCGCAGAAAATAGAAGCGTGCACTCTGTACGCTCTGCCATTCTTCC
GCACATGATATCCCCGGGAAAAATAAGAAGTGCATTCACCGGACCAAGCA
GGAAGGCACGCTCTGGGTTCATTAAACGGTCGCGCGCAAGATCAAGCCTC
GACAGACCCAGATGACTCCGCATGGAGCACAGCAAAGAAGCCTCATCATC
CCCCCCCTCTCTTCCTCCGTATTTTCTATCTACACCCCCCTAAAACCCTC
AGACCACCCAGGATGCCATCCCTGATGTCTACGTCACCATCTTCCTGGCC
CTGCTGGAGCTATACAAGCATGGGGGCATCTACGTAGACCTGACGACGTT
CTTCGTACGGCCTCTCCCCGCCGACCGGGATGGGTTCGTGGCCGGGGGGG
AAGGCCCCGGCCCCGGCGGGCCCACTGGCGACTGCTCCATGCTCACCTCT
CGCAACAGGTTGCAGCGGCCGTTCGTGATGCAGGTGAATGAGTGCGTGTG
CTCGTGTGCATGCGCGTGCGCGCTTGTGTGTGTGTGCATGTACGCGTCTG
GGTGCGTTTTCGCTGTGCGCGCGCGTAGTGCGATCTGTCCTATCAGCACT
TCACATTGTGTGCACGAAGGGAAGGATTCGAAGGCGACGCTGACGTGGGG
GGACATGATTCGGCGAGACAGCGCCGACGATGAAACAGTCTCATGGTTAC
TCGGGGTTGTAAAGGGATGGGATGTAGGGAGAGGGGCAGGTTAAGTTGCT
GACAGCTCCCCTGTGCTTATTTCATTCGTCACTTGCACTATTGTGTAACA
GCGAGTCTTTTTCTCTTGCTGGATGTGATCCCGGTTGTGGCGGGCGCCCC
TAGCCCTGGCCGAGCACGTTCCCGCATTTCCGGTGCTAAAAAGGCCCGCT
TCGCCCTCCCAACAGCAAATCCCGCCCCCATCCAAAAGACGCAAATCCCC
AACGTCGTCGGCGCGTCAACGAACTGTGAGATCAGCTCTATCGCACGGGC
ATACAATTGGCCAGGAAACAATGGTCATCTGAGGTTGGAAGACAGGTGAC
GCTGAGTGCCCCCCCTTCTTGCCGACCTCCCCACCTCACCCTCTTGTCCT
CTCCTCTTTCTAGCCCTCACGTTTCCCTCCAAATTCCCCCCGAAATCGCG
AAACTGCAACAACAGTACCGCGCCCCGCAACACCCGGTCGTGGCATGCGT
CCTGGGCGAGTATGACGTGAATACGTCGGTGCTGAACGAGTGCGTCGTGC
TCACGAAGGCGACGGACGGCAAGGGGGGTATGGACTGCGTCTTGGACGCG
CTCGAAAGGTGCACGGAGAAAGTGAGTGAGCGACTTGTGAATGCTCGTGC
TACGATGGTGTTGGTTTTAGTGCTGCGATGGTGATCGTTATGCTGTTCAT
CTTGTTCACGCCCTTTTTGCACTTTCGAGGTAGTCACGGCGGTGTTTCAC
TTCTGCATGGCTTGTCTCCAGGTGGCGATGGGGCCAGGATATTCACCGGG
TAACTTGGGGTCAAGGCATTCGTTTCCACGAGATGCTTTGTGCTCCGGTC
GGAATGCGGTCCACCCCTGCAGCAGTACTGGGGCGGCCTTGTGCCTGGTG
AATACCGGACAAAGACATGCTTTTACTTGGCGAAAGCCAAGCATGCAGGA
TTTTCACGGTAGCAGTAACGCGGCGTACGAGATCATGACTACCCTGCCTC
TCCCTCATCTGCCACCCCCTGCCATGTGTCGTTTTGTTTGGAACCGAAAC
ATTTGTTGATCCAAAATGACACAGCTGGGCATGCAAAACGACCTTCGGCT
AGCAGGCGTGGTGGAGTGGCACGGCTGCAGCGATGAAACGGCCCGGAGCT
ACGCGAGTGTTTCCAGGTACAGCAGAAACGATTTACAATCCCAACGACAA
CGGAAACAGCAACATGAACCGACCGAAGCAATCGCAGCCGCAACTCGCAG
AAAGCACAGAAGCGCCGAAAGGCCATGCCTTCTTGTGTTCCGGTTTGTCA
GCCGCCATCTTCTCCTCGCGAATTACGCTTCTCCGCCCCGTAGTTACATC
TGTGTTCTGCTTTGTTTTTTCTGCTGTCCCACGCCATTGGAAACGTCACG
CGGCGCAAACTCGTGGTTAATTGAAGCACCGGGACGTCCGGAGCGGATGT
ACTGAAAAGGGTCGCGGCGATCCCCCCGCCGCCGTCGACCGCTTCGGAGT
CAGGCGACCCAAGGCGTTCCTCGGGGCAGCTCGCCCCCGCCCCGGGGGGC
ACCAGGGCATCGGATGATTCTAGCGCGGCCTTAAAAGGTGAAGGGGAGAC
GTGGCGAATGGAGCCGCCGGCGGGCAGCTGTTGTTGACGTGCGTTTTGGC
GCCCACTTCCAGCTTCCAGAAATACCCATCGACGCCATGCAGGGTTTAAC
TGATCGTTGGATTTGTCTTGTTCCGAAACCGATTCCCGAGCTGCTCGTCG
TTCGTAACGTGACTGAAAACAGTTTCCTCGAGTAATATCCCGGGTTATCA
AGCGGGTCAGCACGGCAGAGTCTTACTCACGGATGAATCAAGGCACGAGT
CGATTGCGTCTTGAGCAGGAGCGTGTGCGTTGAGATGCACCCGTTCCGTA
GTATTTTGGGGGCTGAAGCATGATCCAGCGGTTTGCCTGAAGGTCCATCG
AATGGGAAGGTCGAGCACTTTTTGGCCACCCGGAGCATGGCTTCCATTTC
TCTTCTTTCTGCTTTGGAGCTGTCCGCGTAAAATCACCCCTTCCCCTGCG
CCGAAGCCCCTTGTCCCACATGCGTAACTCCTAGCTGTTCGTATTTCCAG
CTATCCACGCAAGTTTGTGGCCGTTCTCCCCCCGTTCTCTTCGTTCAGGC
GGACCGGCGACCTCGGCGGGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig16:1977611..1988831-

>mRNA_P-fluviatile_contig16.2797.1 ID=mRNA_P-fluviatile_contig16.2797.1|Name=mRNA_P-fluviatile_contig16.2797.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2898bp|location=Sequence derived from alignment at P-fluviatile_contig16:1977611..1988831- (Porterinema fluviatile SAG_2381)
ATGCACCGCAATCTAAGTGCCTCACGCAGGCCCCCTAGACCCTCGGTAAG
GAGGAGAAGAAGGGTCGTTCCGAGCAGCGGCAGTAGCCAGCCACATGGTC
GAGGTGCAACAGCTTCGAATCCGATCACAAAGATGCACCGCAATCTAAGT
GCCTCACGCAGGCCCCCTAGACCCTCGGTAAGGAGGAGAAGAAGGGTCGT
TCCGAGCAGCGGCAGTAGCCAGCCACATGGTCGAGGTGCAACAGCTTCGA
ATCCGATCACAAAGGTACTGTTGCTGTCCTGCGCGGTCTTGGCTCTGCTG
ATGTACTTCTACAGCAAGCCTGCCGCCCCGCCCCCCGTCCATGGGAACGG
CAGGGGAGAGGGTGGGCTATATGGGGACCGGGACACCCTGCACACCTTCT
CCGGCGTTCCAGTGGGAGGGTGGAACGGCACGGTGGCCCCGGGGGACAGG
TATGTACTGTTGCTGTCCTGCGCGGTCTTGGCTCTGCTGATGTACTTCTA
CAGCAAGCCTGCCGCCCCGCCCCCCGTCCATGGGAACGGCAGGGGAGAGG
GTGGGCTATATGGGGACCGGGACACCCTGCACACCTTCTCCGGCGTTCCA
GTGGGAGGGTGGAACGGCACGGTGGCCCCGGGGGACAGGTATAGATGGGA
AATAGGCGCAGGATGGGCAGCAAATGTCTTGTCTGAGGACCTCGAGGACT
GGGCGCCGGTCGGGCCGGATTTGCAAGAGATGGGAAATAGGCGCAGGATG
GGCAGCAAATGTCTTGTCTGAGGACCTCGAGGACTGGGCGCCGGTCGGGC
CGGATTTGCAAGGCGTGCTGCCTCGGACGGCAGCCTCACCGGAGGCGCAG
CCGATGGTGATGGTGGGGTGGGGGTTCGGGAGCACGAAGCTGACGCTGTA
CACGTATCGGGCGCTGGAGAGCATTTTGCACGTGTATCCCGCGGCGCGTG
TCAGGCGTGCTGCCTCGGACGGCAGCCTCACCGGAGGCGCAGCCGATGGT
GATGGTGGGGTGGGGGTTCGGGAGCACGAAGCTGACGCTGTACACGTATC
GGGCGCTGGAGAGCATTTTGCACGTGTATCCCGCGGCGCGTGTCAGAGTG
CTGAACTCTTAGTGCTGAACTCTTTAGGACCGCGGTACGCCTACTTCTAC
AAGTGGGCAAACATCATCGCGCTTACGCAATTCCAGAAGTACAGCAAGAG
GGGCTACGATGTCAAGTAGGACCGCGGTACGCCTACTTCTACAAGTGGGC
AAACATCATCGCGCTTACGCAATTCCAGAAGTACAGCAAGAGGGGCTACG
ATGTCAAGGTGGAAATTTTCTTCGGCAAGATGTATGCACGCATCAAGATG
AACGGCCGGATGATTCCGGGGCACCAGTGGTGGCAGCGCCACGAGAACTC
GCTGCTGTTCGGCAAAGGGATGCAAATTAAACAGTTTCAGGTGGAAATTT
TCTTCGGCAAGATGTATGCACGCATCAAGATGAACGGCCGGATGATTCCG
GGGCACCAGTGGTGGCAGCGCCACGAGAACTCGCTGCTGTTCGGCAAAGG
GATGCAAATTAAACAGTTTCAGACCACCCAGGATGCCATCCCTGATGTCT
ACGTCACCATCTTCCTGGCCCTGCTGGAGCTATACAAGCATGGGGGCATC
TACGTAGACCTGACGACGTTCTTCGTACGGCCTCTCCCCGCCGACCGGGA
TGGGTTCGTGGCCGGGGGGGAAGGCCCCGGCCCCGGCGGGCCCACTGGCG
ACTGCTCCATGCTCACCTCTCGCAACAGGTTGCAGCGGCCGTTCGTGATG
CAGACCACCCAGGATGCCATCCCTGATGTCTACGTCACCATCTTCCTGGC
CCTGCTGGAGCTATACAAGCATGGGGGCATCTACGTAGACCTGACGACGT
TCTTCGTACGGCCTCTCCCCGCCGACCGGGATGGGTTCGTGGCCGGGGGG
GAAGGCCCCGGCCCCGGCGGGCCCACTGGCGACTGCTCCATGCTCACCTC
TCGCAACAGGTTGCAGCGGCCGTTCGTGATGCAGTACCGCGCCCCGCAAC
ACCCGGTCGTGGCATGCGTCCTGGGCGAGTATGACGTGAATACGTCGGTG
CTGAACGAGTGCGTCGTGCTCACGAAGGCGACGGACGGCAAGGGGGGTAT
GGACTGCGTCTTGGACGCGCTCGAAAGGTGCACGGAGAAATACCGCGCCC
CGCAACACCCGGTCGTGGCATGCGTCCTGGGCGAGTATGACGTGAATACG
TCGGTGCTGAACGAGTGCGTCGTGCTCACGAAGGCGACGGACGGCAAGGG
GGGTATGGACTGCGTCTTGGACGCGCTCGAAAGGTGCACGGAGAAACTGG
GCATGCAAAACGACCTTCGGCTAGCAGGCGTGGTGGAGTGGCACGGCTGC
AGCGATGAAACGGCCCGGAGCTACGCGAGTGTTTCCAGCTGGGCATGCAA
AACGACCTTCGGCTAGCAGGCGTGGTGGAGTGGCACGGCTGCAGCGATGA
AACGGCCCGGAGCTACGCGAGTGTTTCCAGCACCGGGACGTCCGGAGCGG
ATGTACTGAAAAGGGTCGCGGCGATCCCCCCGCCGCCGTCGACCGCTTCG
GAGTCAGGCGACCCAAGGCGTTCCTCGGGGCAGCTCGCCCCCGCCCCGGG
GGGCACCAGGGCATCGGATGATTCTAGCGCGGCCTTAAAAGCACCGGGAC
GTCCGGAGCGGATGTACTGAAAAGGGTCGCGGCGATCCCCCCGCCGCCGT
CGACCGCTTCGGAGTCAGGCGACCCAAGGCGTTCCTCGGGGCAGCTCGCC
CCCGCCCCGGGGGGCACCAGGGCATCGGATGATTCTAGCGCGGCCTTAAA
AGGCGGACCGGCGACCTCGGCGGGGGCGGACCGGCGACCTCGGCGGGG
back to top