mRNA_P-fluviatile_contig16.2784.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2784.1
Unique NamemRNA_P-fluviatile_contig16.2784.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: A0A6H5L628_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L628_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 2.710e-45
Identity = 96/146 (65.75%), Postives = 103/146 (70.55%), Query Frame = 1
Query:   10 GAGSRDGAGMLAVY-----------VLEGWAATIVDELKDASFVDV--SAARKGG--CGGVAATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLGRANIA 402
            GA SR  +G L V            VLEGWAATI +ELK A+FVDV  S  R GG          A  DSVFCVT+ GVLCAFTRGGVMEHWVSLEA AAYGLS HEDGTLA ACADG+VRLF+A+ L YVATLPRPPPLG ANIA
Sbjct:  128 GASSRGESGGLGVAGGGEVVSPVVGVLEGWAATIGEELKGATFVDVCSSGTRSGGGXXXXXXXXXAALDSVFCVTAEGVLCAFTRGGVMEHWVSLEAPAAYGLSAHEDGTLAVACADGVVRLFKADSLGYVATLPRPPPLGHANIA 273          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: D7FN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN20_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.260e-44
Identity = 92/124 (74.19%), Postives = 98/124 (79.03%), Query Frame = 1
Query:   46 VYVLEGWAATIVDELKDASFVDV--SAARKGGCGGVAAT---AAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLGRANIA 402
            V VLEGWAATI +ELK A+FVDV  S  R GG          AA  DSVFCVT+ GVLCAFTRGGVMEHWVSLEA AAYGLSVHEDGTLA ACADG+VRLF+A+ L YVATLPRPPPLG ANIA
Sbjct:  253 VGVLEGWAATIGEELKRATFVDVCSSGKRSGGXXXXXXXXXXAAALDSVFCVTAEGVLCAFTRGGVMEHWVSLEAPAAYGLSVHEDGTLAVACADGVVRLFKADSLGYVATLPRPPPLGHANIA 376          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: A0A835ZC14_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC14_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.850e-25
Identity = 65/135 (48.15%), Postives = 91/135 (67.41%), Query Frame = 1
Query:   46 VYVLEGWAATIVDELKDASFVDVSAARKG-GCGGVAATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFE---------------AEDLRYVATLPRPPPLGRANIA 402
            V  ++G  A+I ++L+D++F+DV+  R G G GG AA  +   +VFCVTS G+LC F+R  VME WV+LE++ AYG+SV +DG LAAAC +G++RLF+                  L+YVATLP+PPPLG AN+A
Sbjct:  433 VPCIQGTPASIEEDLRDSTFMDVACDRGGEGEGGAAAGLS---TVFCVTSKGILCTFSRTHVMEQWVTLESATAYGVSV-QDGMLAAACCNGVIRLFKFNSTSSNSTSSEGDACSKLQYVATLPKPPPLGHANVA 563          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: A0A7S2WI79_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WI79_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.460e-13
Identity = 51/121 (42.15%), Postives = 65/121 (53.72%), Query Frame = 1
Query:   55 LEGWAATIVDELKDASFVDVSAARKGGCGGVAATAAEPDSVFCVTSGGVLCAF-TRGGVMEHWVSLEASAAYGLSVHEDGTL----AAACADGLVRLFEAEDLRYVATLPRPPPLGRANIA 402
            L G  A+IV+  + A+FVDV               A   +V+ VT+GG LC+F      +  +V+LEA A Y LSV   G L    A  C+ GLVRLFEA  L+YV TLP PPP+   N A
Sbjct:   18 LPGKPASIVESHRGATFVDV--------------VATASAVYAVTTGGFLCSFHPESASIVGYVNLEARAGYSLSVQPTGGLRPLIAVGCSSGLVRLFEAGSLKYVLTLPHPPPVAHMNFA 124          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: A0A1R2BM88_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BM88_9CILI)

HSP 1 Score: 76.3 bits (186), Expect = 1.630e-13
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  157 AAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLGRANIA 402
            A   D++F +T  GVLC FT    M+ W+ L A + Y L+      L   C+DG++R F+AE L ++ TLPRPPPLG+ANI+
Sbjct:  228 AVSKDNIFALTQDGVLCVFTLERAMDKWMDLHAGSGYVLTTIGKYLLCG-CSDGIIRCFDAESLEHIVTLPRPPPLGQANIS 308          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: UPI00144619E9 (mitogen-activated protein kinase-binding protein 1-like isoform X1 n=2 Tax=Epinephelus lanceolatus TaxID=310571 RepID=UPI00144619E9)

HSP 1 Score: 75.5 bits (184), Expect = 3.080e-13
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   76 IVDELKDASFVDVSAARKGGCGGVAATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLG 387
            ++ EL++  F DV+  R           +  DS+FC+TS G+LC F    V++ WV L+   A  LS+ ED  +   CADG VR F   DL +  TLPRP PLG
Sbjct:  221 LLGELRNNFFCDVACGR----------GSTSDSIFCITSSGLLCEFNSKRVLDKWVDLQTGMAQSLSLSED-MIFCGCADGTVRAFSPADLHFACTLPRPHPLG 313          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: A0A8J4XB20_CLAMG (Mitogen-activated protein kinase-binding protein 1-like isoform X1 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4XB20_CLAMG)

HSP 1 Score: 74.3 bits (181), Expect = 7.740e-13
Identity = 42/104 (40.38%), Postives = 60/104 (57.69%), Query Frame = 1
Query:   76 IVDELKDASFVDVSAARKGGCGGVAATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLG 387
            ++ EL++ SF DV+  R            + +S+FC+TS G+LC F    +++ WV L  S A  L V E+  +  ACADG VR+F   DLR++ TLPRP  LG
Sbjct:  223 LLGELQNNSFCDVACGR----------GEKSESIFCITSSGLLCEFNDKRMLDKWVDLRTSTASALFVTEE-LIFCACADGTVRVFNPSDLRFICTLPRPHHLG 315          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: UPI00189F3BE0 (mitogen-activated protein kinase-binding protein 1 isoform X1 n=2 Tax=Sebastes umbrosus TaxID=72105 RepID=UPI00189F3BE0)

HSP 1 Score: 73.9 bits (180), Expect = 1.060e-12
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   76 IVDELKDASFVDVSAARKGGCGGVAATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLG 387
            ++ EL++  F DV+  R           +  DSVFC+TS G+LC F    +++ WV L    A  LS+ ED  +   CADG VR F + DL +  TLPRP PLG
Sbjct:  221 LLGELRNNFFCDVACGR----------GSTSDSVFCITSSGLLCEFNSKRMLDKWVDLRTGVAQSLSLSED-MIFCGCADGTVRAFSSVDLHFSCTLPRPHPLG 313          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: UPI0018ECBB9C (mitogen-activated protein kinase-binding protein 1-like isoform X2 n=1 Tax=Micropterus salmoides TaxID=27706 RepID=UPI0018ECBB9C)

HSP 1 Score: 73.9 bits (180), Expect = 1.060e-12
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   76 IVDELKDASFVDVSAARKGGCGGVAATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLG 387
            ++ EL++  F DV+  R           +  DS+FC+TS G+LC F    +++ WV L    A  LS+ ED  +   CADG VR F   DL +V TLPRP PLG
Sbjct:  233 LLGELRNNFFCDVACGR----------GSTSDSIFCITSSGLLCEFNSKRMLDKWVDLRTVMAQSLSLSED-MIFCGCADGTVRAFSPVDLHFVCTLPRPHPLG 325          
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Match: UPI0018EC1870 (mitogen-activated protein kinase-binding protein 1-like isoform X1 n=3 Tax=Centrarchoidei TaxID=1545897 RepID=UPI0018EC1870)

HSP 1 Score: 73.9 bits (180), Expect = 1.060e-12
Identity = 42/104 (40.38%), Postives = 57/104 (54.81%), Query Frame = 1
Query:   76 IVDELKDASFVDVSAARKGGCGGVAATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLAAACADGLVRLFEAEDLRYVATLPRPPPLG 387
            ++ EL++  F DV+  R           +  DS+FC+TS G+LC F    +++ WV L    A  LS+ ED  +   CADG VR F   DL +V TLPRP PLG
Sbjct:  233 LLGELRNNFFCDVACGR----------GSTSDSIFCITSSGLLCEFNSKRMLDKWVDLRTVMAQSLSLSED-MIFCGCADGTVRAFSPVDLHFVCTLPRPHPLG 325          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L628_9PHAE2.710e-4565.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN20_ECTSI3.260e-4474.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZC14_9STRA5.850e-2548.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WI79_9STRA1.460e-1342.15Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A1R2BM88_9CILI1.630e-1345.12Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
UPI00144619E93.080e-1340.38mitogen-activated protein kinase-binding protein 1... [more]
A0A8J4XB20_CLAMG7.740e-1340.38Mitogen-activated protein kinase-binding protein 1... [more]
UPI00189F3BE01.060e-1240.38mitogen-activated protein kinase-binding protein 1... [more]
UPI0018ECBB9C1.060e-1240.38mitogen-activated protein kinase-binding protein 1... [more]
UPI0018EC18701.060e-1240.38mitogen-activated protein kinase-binding protein 1... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:1883309..1884285 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score165.2
Seed ortholog evalue2e-38
Seed eggNOG ortholog2880.D7FN20
Preferred nameWDR90
KEGG koko:K14962,ko:K21763
KEGG Pathwayko03015,map03015
EggNOG free text desc.Mitogen-activated protein
EggNOG OGsKOG1408@1,KOG1408@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size403
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.7131674-CDS-P-fluviatile_contig16:1883308..18834921622815702.7131674-CDS-P-fluviatile_contig16:1883308..1883492Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1883309..1883492 -
1693562995.2458916-CDS-P-fluviatile_contig16:1883308..18834921693562995.2458916-CDS-P-fluviatile_contig16:1883308..1883492Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1883309..1883492 -
1622815702.7246199-CDS-P-fluviatile_contig16:1884067..18842851622815702.7246199-CDS-P-fluviatile_contig16:1884067..1884285Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1884068..1884285 -
1693562995.6121771-CDS-P-fluviatile_contig16:1884067..18842851693562995.6121771-CDS-P-fluviatile_contig16:1884067..1884285Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1884068..1884285 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2784.1prot_P-fluviatile_contig16.2784.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 1883309..1884285 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2784.1

>prot_P-fluviatile_contig16.2784.1 ID=prot_P-fluviatile_contig16.2784.1|Name=mRNA_P-fluviatile_contig16.2784.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=134bp
GWDGAGSRDGAGMLAVYVLEGWAATIVDELKDASFVDVSAARKGGCGGVA
ATAAEPDSVFCVTSGGVLCAFTRGGVMEHWVSLEASAAYGLSVHEDGTLA
AACADGLVRLFEAEDLRYVATLPRPPPLGRANIA
back to top

mRNA from alignment at P-fluviatile_contig16:1883309..1884285-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2784.1 ID=mRNA_P-fluviatile_contig16.2784.1|Name=mRNA_P-fluviatile_contig16.2784.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=977bp|location=Sequence derived from alignment at P-fluviatile_contig16:1883309..1884285- (Porterinema fluviatile SAG_2381)
GGGTGGGACGGGGCAGGGTCCCGCGATGGGGCCGGCATGCTTGCTGTTTA TGTGCTTGAGGGTTGGGCGGCGACAATCGTGGACGAGCTTAAGGATGCAT CGTTTGTGGACGTTTCAGCGGCGCGAAAGGGTGGTTGCGGCGGGGTCGCG GCGACGGCGGCGGAGCCGGATAGCGTTTTTTGCGTCACCTCGGGAGGCGT GTTGTGCGCATTCACCCGGTGAGAAGGAGCGCCGTTTCTGCGTGCTTAAA TGGGGAGTTGGCAGCAAGGTTCGAGGCTTTCCCTCTCTTCATATCTGTCT CCGTTTTGGTTCTCACACTGCCATGTCTTGTCAGCCTGAAAAGGTGTCCA GCTCCAGAAAGGTACCCAAGCTCCACACATCTTGGAAGAAAAATGCGCGC CGATGTGGTAGTGTTCGCCTTTGGCTTGACGTCGCTCCAACTCACGTATG GCCAGCCGACCTGTTTCCACCAAATGGCTGCCGCTTTGCCTGAAGAACTC ATGAAATGGCCGCCGCCTGGTACCCCCATTCCTATGCGCCATGTTTTTTG TTTCCTTGCGTCGGCTTTTTTGTACCCGGCTTCGAGAACACAGGCGGTCA TTCGCAAGAAGCGGCAATCGTGATTCTCTGAAGTAGATCAGGAAAAACAA TAACAACGGCAACAACAGCAACAACAACAACAATAACAAAAACAGCAACA ACATCAACTACAGCAGCAGCAGCAGATAAAAATCCCATGGAAATCAACAA CCCGCTCGACGTCACCCGCCCCCCCCTCCTGCCGGGACTGAAGTGGAGGT GTCATGGAGCATTGGGTATCTTTGGAGGCGTCCGCAGCTTACGGCTTGTC CGTGCACGAGGACGGCACCCTGGCGGCGGCCTGCGCCGACGGCCTGGTCC GGCTTTTCGAGGCCGAAGACCTACGGTACGTTGCCACCCTCCCCCGCCCG CCCCCGCTCGGCCGCGCAAATATCGCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig16:1883309..1884285-

>mRNA_P-fluviatile_contig16.2784.1 ID=mRNA_P-fluviatile_contig16.2784.1|Name=mRNA_P-fluviatile_contig16.2784.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=804bp|location=Sequence derived from alignment at P-fluviatile_contig16:1883309..1884285- (Porterinema fluviatile SAG_2381)
GGGTGGGACGGGGCAGGGTCCCGCGATGGGGCCGGCATGCTTGCTGTTTA
TGTGCTTGAGGGTTGGGCGGCGACAATCGTGGACGAGCTTAAGGATGCAT
CGTTTGTGGACGTTTCAGCGGCGCGAAAGGGTGGTTGCGGCGGGGTCGCG
GCGACGGCGGCGGAGCCGGATAGCGTTTTTTGCGTCACCTCGGGAGGCGT
GTTGTGCGCATTCACCCGGGGTGGGACGGGGCAGGGTCCCGCGATGGGGC
CGGCATGCTTGCTGTTTATGTGCTTGAGGGTTGGGCGGCGACAATCGTGG
ACGAGCTTAAGGATGCATCGTTTGTGGACGTTTCAGCGGCGCGAAAGGGT
GGTTGCGGCGGGGTCGCGGCGACGGCGGCGGAGCCGGATAGCGTTTTTTG
CGTCACCTCGGGAGGCGTGTTGTGCGCATTCACCCGTGGAGGTGTCATGG
AGCATTGGGTATCTTTGGAGGCGTCCGCAGCTTACGGCTTGTCCGTGCAC
GAGGACGGCACCCTGGCGGCGGCCTGCGCCGACGGCCTGGTCCGGCTTTT
CGAGGCCGAAGACCTACGGTACGTTGCCACCCTCCCCCGCCCGCCCCCGC
TCGGCCGCGCAAATATCGCCTGGAGGTGTCATGGAGCATTGGGTATCTTT
GGAGGCGTCCGCAGCTTACGGCTTGTCCGTGCACGAGGACGGCACCCTGG
CGGCGGCCTGCGCCGACGGCCTGGTCCGGCTTTTCGAGGCCGAAGACCTA
CGGTACGTTGCCACCCTCCCCCGCCCGCCCCCGCTCGGCCGCGCAAATAT
CGCC
back to top