mRNA_P-fluviatile_contig16.2780.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2780.1
Unique NamemRNA_P-fluviatile_contig16.2780.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2780.1 vs. uniprot
Match: A0A6H5L4C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4C9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 5.220e-14
Identity = 83/221 (37.56%), Postives = 108/221 (48.87%), Query Frame = 3 
Query:   24 GPLSLERSFRESFASVNNVLSAIAG-----------------------SAGDGGIRPGGLVDTKQSLRPLLPSPSIGRV-----------VEGVAGLYARPELFDKVSPVPPPSRRAQPLQAAGGRGSLSEAAAAGSRTAVASAPGRADEAGTG-PAKLAFDEGFG----------GGASGDKRMQAEMSGMLERYSEMMLRVVQEKLEAKIADGTPRPST 551
            GPL+LE SFRESFASV  +LS +AG                       S+G G + PG   +T  +    L + S  ++                GL + P L   +S +PPPSRRA   + A   GS  E    G R  +   PG A E     PA  A D+G G          GGA  ++++ AEM+GML RYSEMML+VVQEK+EA++ DGT  PST
Sbjct: 1665 GPLALETSFRESFASVYGILSVMAGKAIPAACLISPSLASIGGSCANSSSGSGAV-PGDASNTGSTTSGRLAAMSKHKIGTESSSSHQSAERDRGGLASPPGL--SLSVLPPPSRRALARETASPGGS--ETIVGGVRAVI---PGTAAEKVEALPAAEAGDKGAGSVESRSGRALGGA--EEQLPAEMTGMLHRYSEMMLKVVQEKMEARMNDGTLHPST 1875
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BLAST of mRNA_P-fluviatile_contig16.2780.1 vs. uniprot
Match: D7FN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN20_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 5.030e-12
Identity = 80/219 (36.53%), Postives = 103/219 (47.03%), Query Frame = 3 
Query:   24 GPLSLERSFRESFASVNNVLSAIAG-----------------------SAGDGGIRP---------GGLVDTKQSLRPLLPSPSIGRVVEGVAGLYARPELFDKVSPVPPPSRRAQPLQAAGGRGSLSEAAAAGSRTAVASAPGR-ADEAGTGPAKLAFDEGFG----------GGASGDKRMQAEMSGMLERYSEMMLRVVQEKLEAKIADGTPRPST 551
            G L+LERSFRESFA VN +LS +AG                       S+G G             GG +      +    S S  +  E   G  A P     +S +PPP RRAQ  + A   GS  E    G R  +   PG  A++    P   A D+G G          GGA  ++++ AEM+GML RYSEMML+VVQEK+EA++ DGT  PST
Sbjct: 2212 GQLALERSFRESFACVNGILSVMAGKGIPAASPASPSPASIGGSCANSSSGSGXXXXXXXXXXXTTGGRLAAMSKHKIGTESSSSHQSAERDRGGLASPPGLS-LSFLPPPPRRAQAREMASPGGS--ETIVGGLRAVI---PGTTAEKVEALPVAEAGDKGAGSVESRSRRALGGA--EEQLPAEMTGMLHRYSEMMLKVVQEKMEARMNDGTLHPST 2422
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4C9_9PHAE5.220e-1437.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN20_ECTSI5.030e-1236.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:1867563..1868813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size693
Cds size114
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2780.1prot_P-fluviatile_contig16.2780.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 1867702..1868373 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.5871909-UTR-P-fluviatile_contig16:1867562..18677011622815702.5871909-UTR-P-fluviatile_contig16:1867562..1867701Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1867563..1867701 -
1693562995.0945902-UTR-P-fluviatile_contig16:1867562..18677011693562995.0945902-UTR-P-fluviatile_contig16:1867562..1867701Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1867563..1867701 -
1622815702.6225672-UTR-P-fluviatile_contig16:1868373..18688131622815702.6225672-UTR-P-fluviatile_contig16:1868373..1868813Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1868374..1868813 -
1693562995.197007-UTR-P-fluviatile_contig16:1868373..18688131693562995.197007-UTR-P-fluviatile_contig16:1868373..1868813Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1868374..1868813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.600885-CDS-P-fluviatile_contig16:1867701..18677521622815702.600885-CDS-P-fluviatile_contig16:1867701..1867752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1867702..1867752 -
1693562995.173832-CDS-P-fluviatile_contig16:1867701..18677521693562995.173832-CDS-P-fluviatile_contig16:1867701..1867752Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1867702..1867752 -
1622815702.612693-CDS-P-fluviatile_contig16:1868310..18683731622815702.612693-CDS-P-fluviatile_contig16:1868310..1868373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1868311..1868373 -
1693562995.1853645-CDS-P-fluviatile_contig16:1868310..18683731693562995.1853645-CDS-P-fluviatile_contig16:1868310..1868373Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1868311..1868373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2780.1

>prot_P-fluviatile_contig16.2780.1 ID=prot_P-fluviatile_contig16.2780.1|Name=mRNA_P-fluviatile_contig16.2780.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=38bp
MQAEMSGMLERYSEMMLRVVQEKLEAKIADGTPRPST*
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mRNA from alignment at P-fluviatile_contig16:1867563..1868813-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2780.1 ID=mRNA_P-fluviatile_contig16.2780.1|Name=mRNA_P-fluviatile_contig16.2780.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1251bp|location=Sequence derived from alignment at P-fluviatile_contig16:1867563..1868813- (Porterinema fluviatile SAG_2381)
AGGAGGAGGAGGAGGAGACATCGGGACCACTTTCTCTTGAGAGGTCATTC
CGAGAGAGCTTCGCCTCGGTGAACAACGTGCTGTCCGCCATCGCCGGCAG
TGCAGGCGATGGGGGTATCAGGCCTGGTGGCCTCGTAGACACAAAGCAAA
GCCTGAGGCCGTTACTTCCATCACCGTCAATCGGGAGGGTGGTGGAAGGA
GTGGCGGGGCTCTACGCTCGGCCGGAATTGTTCGACAAGGTTTCCCCCGT
CCCGCCGCCATCTCGACGGGCACAACCGCTACAGGCGGCGGGCGGCAGAG
GTAGCCTTTCGGAAGCGGCGGCCGCGGGATCGCGGACGGCGGTTGCTTCA
GCGCCAGGCAGGGCCGACGAGGCTGGGACGGGGCCGGCTAAACTGGCGTT
CGATGAAGGATTTGGTGGGGGTGCAAGCGGAGACAAGCGAATGCAGGCGG
AGATGTCTGGCATGCTGGAGCGTTACTCGGAAATGATGCTAAGGGTCGTG
CAGGTAGGTGGTTGATCGAAAGAAATCGTGTAGACACATGCCTGCCTTGT
TACTCTTTTGCCGCCATCAGCCCAGCCTCCTCCCCCGTATGCGGCTAAGA
AGCGAATTGGTCTTGAGCGGCCCTCGGTGGGCACGACTTCATGGTCCCCG
GACTGCGAAAGGAATCAAGCCGTGCGCCGCCGTTATCGTGCGTCATTACC
TTTGGCGAAACGTGACACGGCTGTCGGCTGTTTGCACAACAAAGGGGGGC
CGCCCGCCACCTTACGGCGTTCGCCTGCAACCCCTAGGCAATCCGGGGAC
TTCAACGGGTAAAATTGCCTCGAGCGAGTGTGCAGGAAACCAAGACCTGG
AGTATTGTGGCTGCGCTAACGTGACTTGGACGCAGCAAATACACTTGGAC
GTATACAAACGCTTGGCTGGACCGTAGCCGATATCCTTTTCATTTGGAGG
GGTAGAACAACAAGAAATCGTTTTGAAACAGCTTCCTCCATTCGTATGTC
CCAGCCTGCTTCCTCTTTCTCCGAATATCCCTGTTGCATCCCTCCCTCCG
CATATCTGCAGGAGAAACTGGAGGCGAAGATAGCCGACGGAACTCCGCGC
CCAAGTACCTGACCCGTCGCATCCCAGGAACATTTCCGCGCTCCCTCTGA
GGAGGCGTTTTCTAGCTCCCTGGAGCGTACGAGCTGCTCAATGGGGGGCG
ATGCATGATGCTGCCTCTTTCCTCAAAAAACTTGCGTGGTTCATTCTTTT
G
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:1867563..1868813-

>mRNA_P-fluviatile_contig16.2780.1 ID=mRNA_P-fluviatile_contig16.2780.1|Name=mRNA_P-fluviatile_contig16.2780.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=228bp|location=Sequence derived from alignment at P-fluviatile_contig16:1867563..1868813- (Porterinema fluviatile SAG_2381)
ATGCAGGCGGAGATGTCTGGCATGCTGGAGCGTTACTCGGAAATGATGCT
AAGGGTCGTGCAGATGCAGGCGGAGATGTCTGGCATGCTGGAGCGTTACT
CGGAAATGATGCTAAGGGTCGTGCAGGAGAAACTGGAGGCGAAGATAGCC
GACGGAACTCCGCGCCCAAGTACCTGAGAGAAACTGGAGGCGAAGATAGC
CGACGGAACTCCGCGCCCAAGTACCTGA
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