mRNA_P-fluviatile_contig16.2733.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2733.1
Unique NamemRNA_P-fluviatile_contig16.2733.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2733.1 vs. uniprot
Match: D8LD93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD93_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.210e-12
Identity = 59/177 (33.33%), Postives = 84/177 (47.46%), Query Frame = 1 
Query:   82 MLTRKQMWRKIRGGGGRGGKLFEKTNAPNDSRPALTRSSHQQPPTGGRPV------------HP--IDALAVGDSLLHILG----------------------SNSDRRGGEDKDGSCEESSSSTSTRRGKQMVSFHNQVRVVLVPSRKELHPLNEQLWWGADDYIDFRRDYIIAVK 504
            MLTRKQ WR++RG                   P  +  +HQ    GGR              HP  I++L++ DSLL ++                       S+S RR   D+ G+    S+          V F++QVRVVLVPSRKEL PL E+LWWG +DY++FRR+++ A++
Sbjct:    1 MLTRKQQWRRVRG-------------------PRSSVETHQLADRGGRKTCPRAARVPDALAHPRAINSLSIDDSLLRLVATGRPAASDEEXXXXXXXXPAVPSSSVRRPVVDEIGAIRVGSN----------VRFNHQVRVVLVPSRKELRPLIEELWWGTNDYVEFRREFVQAMR 148
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BLAST of mRNA_P-fluviatile_contig16.2733.1 vs. uniprot
Match: A0A6H5KW42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW42_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 4.300e-11
Identity = 60/184 (32.61%), Postives = 82/184 (44.57%), Query Frame = 1 
Query:   82 MLTRKQMWRKIRGGGGRGGKLFEKTNAPNDSRPALTRSSHQQPPTGG------------RPVHP--IDALAVGDSLLHILG----------------------------SNSDRRGGEDK-DGSCEESSSSTSTRRGKQMVSFHNQVRVVLVPSRKELHPLNEQLWWGADDYIDFRRDYIIAVK 504
            MLTRKQ WR++RG                   P  +  +HQ    GG             P HP  I++L++ DSLL +                              S+S R    DK D  C  S+           V F++QVRVVLVPSRKEL PL E+LWWG +DY++FRR+++ A++
Sbjct:    1 MLTRKQQWRRVRG-------------------PRSSVETHQLADRGGGQTCQRVAGAPGAPAHPRAINSLSIDDSLLRLAATGRPAASDXXXXXXXXXXXXXXXXPAVPSSSVRPPKVDKSDAFCVGSN-----------VRFNHQVRVVLVPSRKELRPLMEELWWGTNDYVEFRREFVQAMR 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LD93_ECTSI1.210e-1233.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW42_9PHAE4.300e-1132.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:1277111..1279924 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size907
Cds size825
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2733.1prot_P-fluviatile_contig16.2733.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 1277192..1279924 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.1366484-UTR-P-fluviatile_contig16:1277110..12771911622815677.1366484-UTR-P-fluviatile_contig16:1277110..1277191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1277111..1277191 +
1693562881.8259497-UTR-P-fluviatile_contig16:1277110..12771911693562881.8259497-UTR-P-fluviatile_contig16:1277110..1277191Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1277111..1277191 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.1503818-CDS-P-fluviatile_contig16:1277191..12775891622815677.1503818-CDS-P-fluviatile_contig16:1277191..1277589Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1277192..1277589 +
1693562881.8407297-CDS-P-fluviatile_contig16:1277191..12775891693562881.8407297-CDS-P-fluviatile_contig16:1277191..1277589Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1277192..1277589 +
1622815677.1619585-CDS-P-fluviatile_contig16:1279497..12799241622815677.1619585-CDS-P-fluviatile_contig16:1279497..1279924Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1279498..1279924 +
1693562881.8511221-CDS-P-fluviatile_contig16:1279497..12799241693562881.8511221-CDS-P-fluviatile_contig16:1279497..1279924Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1279498..1279924 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2733.1

>prot_P-fluviatile_contig16.2733.1 ID=prot_P-fluviatile_contig16.2733.1|Name=mRNA_P-fluviatile_contig16.2733.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=275bp
MLTRKQMWRKIRGGGGRGGKLFEKTNAPNDSRPALTRSSHQQPPTGGRPV
HPIDALAVGDSLLHILGSNSDRRGGEDKDGSCEESSSSTSTRRGKQMVSF
HNQVRVVLVPSRKELHPLNEQLWWGADDYIDFRRDYIIAVKAAAAAKRKD
DEQQQPFHKDPASTAGATAESGAVQTTTPQCTAGIDTVRPPSPLPPPPPP
PPPPPRSSPSPLSLASVETPLPPTNAEAASAAAATKTTAATAAASSSLAR
SSSILNLATTTINPVPSRVMVSEIL
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mRNA from alignment at P-fluviatile_contig16:1277111..1279924+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2733.1 ID=mRNA_P-fluviatile_contig16.2733.1|Name=mRNA_P-fluviatile_contig16.2733.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2814bp|location=Sequence derived from alignment at P-fluviatile_contig16:1277111..1279924+ (Porterinema fluviatile SAG_2381)
CCCAGAGAGACCACACACCTATTCACAACCAACTCTTGAACACAACAACG
GCAAGGGACGACAGAAGATAAGTTAGTCACCATGCTGACGCGCAAGCAAA
TGTGGCGAAAAATTCGCGGCGGCGGGGGCCGAGGAGGAAAGCTTTTCGAG
AAGACAAATGCGCCGAACGATAGCCGTCCTGCCCTCACCCGGAGCAGCCA
CCAGCAGCCTCCCACCGGTGGTCGTCCTGTCCATCCGATCGATGCACTGG
CTGTCGGCGACTCTCTTCTCCATATCTTAGGGTCCAATTCTGATCGTCGA
GGCGGCGAGGATAAGGATGGTAGCTGCGAGGAATCCTCGTCGAGTACTTC
AACTCGGCGGGGCAAGCAGATGGTATCTTTTCATAACCAAGTCCGGGTGG
TGCTCGTCCCCAGCAGGAAAGAGCTTCATCCCCTCAACGAGCAGCTGTGG
TGGGGCGCGGACGACTATATCGACTTCCGGTGAGACAAAAACGCGCCGGT
CGTGCGTGTGGCCACACGACTACAAGAAGCTTGTGACGACGCCCTGCTCT
CGCTCTCGAAATCTGTCTCCATATTCTCCGTTCCCCCGCCTCTGCCGCGC
GCGCGCTTTGGAGCCGGGCTTTTTCGGTCGTGTGTGTGTGGTCCACGGAC
GCACCTTGCAATGTCGACGGTGCACGTGTGTGCCGAACACAATCAATCGG
GATAGATTGATGGCGCTAGAATCTCAGCCTTGTTTGGATATTTTTGTTTC
CACTCCTCCTACAGCTAAAGCTGAGCTGGTGCGCCGGCTCTAAACAGTAG
GATCTCGAAACAGCAAAAGAGACCGAAATCTGGGTGACAACACCCGCAGG
ATGTACATCCCTCTGATGACTTCATCCGTGTGTTTTGCTCCCACCCACCA
ACAGAAGCCCACGAAGCCCATGGATCCGTGCGCAGGTCTGCTTGGGTTCA
TTCGCTGCTGCTGTATTGTAGATCTTGCTACCGCCTACACCCGAGATCAC
ACCGAATCGCTGCAGACCGCTCTTGTTTTTGTCGCGTGCAAATTGGTCGC
CGCGGTTGTCTATACTGGCAGGCCGAAGGTGAACTCGAAAACCCGCTAGC
ACCAACTCGTGATTTCGATTCCCGATGACGGCGAAGATTGAAATTCTGGG
GTAAAGAACGAAGAAAGCTGAGAAGATCGCGAGTGTCTAAAAGTCGACTT
CGCTGTTACGAGGGAATGGGATGGCTGAATCCTAATCGCAAATCAAAATC
AAGCACGCACCACAGCAGTAAAGTGAAACAAACGAGCACAAGCAAAAACG
CAGCAAAGCTCCTGCGTTTACCGCCTCCTGTGTGACCCCGGCTGGTTGTA
GTTGGGCAACAAAATACACTGAACAAGTGTAACACTTTAAGTGCAGTTGT
ACCGAAAAAGGGGCAACGACACTCGCCAGAATATAAGGGACAAAACATAC
AACAATCACACCCGTCTCCCACACATGAATGTCTTCCGCTTTAGCACACC
CCTCTCATCGTAATTTGCCTGCCCGTCGTTCCAAGTTGTGGGTACAACGC
GAGAGGTGCATGGAATCCAAACAACGCATTTGTGAACGAGCCGGGGGGGC
TTAGACGCGGACCCTGTGCACTTGTGGCCGTCGGAAATACCCCATCCCGC
ATCCATTCAGGCCCTTCTAGTCCTCCCTTGCGGTGTGTTTTTGTCCTGGG
CGGGTGAGAGCGAAAAATAATAATACTTGCTCTCTGTGGATGTACGCTTG
TTTATCCCTTGAGTACGCAGCTTCATACAAAAGCGGGCTGTCCCGCGGAT
CTGAATCGGTTTTTCGGACTTGGGCGGGACTTGCTGGCTTCACACACACC
TGTGGTGCCTGCTTGTGTTTACGAATGACGTGCGTTGTTCGTGATTTTTG
TTCCGCGTCGGATCCTACCGCACATACACACACTAATTTCCCTACCCCCC
CCTCCTCCCCTCCCCCAGTTGTTTTTTCGTGTGTGCCAAAGTTGTCGGCA
GTGGGCACTCCTGAAATCCACGACCCAATATCCTACCCCTCGAATCCTGT
CACACACGTGTAACCGTGTCGTGTCCTCGTTTCATCCCAAAGTCACGGCA
CCTTGCATTACTTTCCTCTAGTGCGGCTCTCGCTCGTTTGTTTCATCGCT
TCTTCGGCCCACCGGTTGCCCCCGAACTCCATTCTGCCCGTGAGTCCGCC
GTATTAACAAAATAGTGTTGAAGGTGGGGATTCCGGGCGCGAGCTTATAT
CTGTGACGCGCGTGGTACGAAACCAGCGATGAGAACACATGCGGCCACAC
CCGAAATCGCCGACGCTTCCACCGCTTGCGCGTGGACTCCCTCGCCTGTG
CGCTGCCCTTCGTTTTTCTCCTTGCGTATGGATGCAGGCGCGACTACATC
ATTGCCGTTAAGGCAGCCGCGGCCGCGAAGAGGAAGGACGACGAACAGCA
ACAACCATTTCACAAGGATCCCGCCTCCACCGCCGGTGCGACGGCAGAGT
CAGGAGCGGTCCAAACCACAACACCGCAGTGCACTGCAGGCATCGATACC
GTGCGACCGCCGTCGCCACTTCCGCCACCCCCGCCGCCCCCGCCGCCCCC
TCCGCGGTCGTCGCCGTCCCCCTTGTCCTTAGCGAGCGTGGAAACACCGC
TCCCGCCGACGAACGCAGAAGCAGCATCCGCAGCTGCAGCAACGAAGACA
ACGGCGGCGACGGCAGCAGCATCATCAAGTTTAGCAAGGTCATCGTCAAT
CCTTAACCTGGCGACTACCACAATCAATCCCGTCCCGTCTCGCGTCATGG
TGTCCGAGATATTA
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:1277111..1279924+

>mRNA_P-fluviatile_contig16.2733.1 ID=mRNA_P-fluviatile_contig16.2733.1|Name=mRNA_P-fluviatile_contig16.2733.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1650bp|location=Sequence derived from alignment at P-fluviatile_contig16:1277111..1279924+ (Porterinema fluviatile SAG_2381)
ATGCTGACGCGCAAGCAAATGTGGCGAAAAATTCGCGGCGGCGGGGGCCG
AGGAGGAAAGCTTTTCGAGAAGACAAATGCGCCGAACGATAGCCGTCCTG
CCCTCACCCGGAGCAGCCACCAGCAGCCTCCCACCGGTGGTCGTCCTGTC
CATCCGATCGATGCACTGGCTGTCGGCGACTCTCTTCTCCATATCTTAGG
GTCCAATTCTGATCGTCGAGGCGGCGAGGATAAGGATGGTAGCTGCGAGG
AATCCTCGTCGAGTACTTCAACTCGGCGGGGCAAGCAGATGGTATCTTTT
CATAACCAAGTCCGGGTGGTGCTCGTCCCCAGCAGGAAAGAGCTTCATCC
CCTCAACGAGCAGCTGTGGTGGGGCGCGGACGACTATATCGACTTCCGAT
GCTGACGCGCAAGCAAATGTGGCGAAAAATTCGCGGCGGCGGGGGCCGAG
GAGGAAAGCTTTTCGAGAAGACAAATGCGCCGAACGATAGCCGTCCTGCC
CTCACCCGGAGCAGCCACCAGCAGCCTCCCACCGGTGGTCGTCCTGTCCA
TCCGATCGATGCACTGGCTGTCGGCGACTCTCTTCTCCATATCTTAGGGT
CCAATTCTGATCGTCGAGGCGGCGAGGATAAGGATGGTAGCTGCGAGGAA
TCCTCGTCGAGTACTTCAACTCGGCGGGGCAAGCAGATGGTATCTTTTCA
TAACCAAGTCCGGGTGGTGCTCGTCCCCAGCAGGAAAGAGCTTCATCCCC
TCAACGAGCAGCTGTGGTGGGGCGCGGACGACTATATCGACTTCCGGCGC
GACTACATCATTGCCGTTAAGGCAGCCGCGGCCGCGAAGAGGAAGGACGA
CGAACAGCAACAACCATTTCACAAGGATCCCGCCTCCACCGCCGGTGCGA
CGGCAGAGTCAGGAGCGGTCCAAACCACAACACCGCAGTGCACTGCAGGC
ATCGATACCGTGCGACCGCCGTCGCCACTTCCGCCACCCCCGCCGCCCCC
GCCGCCCCCTCCGCGGTCGTCGCCGTCCCCCTTGTCCTTAGCGAGCGTGG
AAACACCGCTCCCGCCGACGAACGCAGAAGCAGCATCCGCAGCTGCAGCA
ACGAAGACAACGGCGGCGACGGCAGCAGCATCATCAAGTTTAGCAAGGTC
ATCGTCAATCCTTAACCTGGCGACTACCACAATCAATCCCGTCCCGTCTC
GCGTCATGGTGTCCGAGATATTAGCGCGACTACATCATTGCCGTTAAGGC
AGCCGCGGCCGCGAAGAGGAAGGACGACGAACAGCAACAACCATTTCACA
AGGATCCCGCCTCCACCGCCGGTGCGACGGCAGAGTCAGGAGCGGTCCAA
ACCACAACACCGCAGTGCACTGCAGGCATCGATACCGTGCGACCGCCGTC
GCCACTTCCGCCACCCCCGCCGCCCCCGCCGCCCCCTCCGCGGTCGTCGC
CGTCCCCCTTGTCCTTAGCGAGCGTGGAAACACCGCTCCCGCCGACGAAC
GCAGAAGCAGCATCCGCAGCTGCAGCAACGAAGACAACGGCGGCGACGGC
AGCAGCATCATCAAGTTTAGCAAGGTCATCGTCAATCCTTAACCTGGCGA
CTACCACAATCAATCCCGTCCCGTCTCGCGTCATGGTGTCCGAGATATTA
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