mRNA_P-fluviatile_contig16.2714.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2714.1
Unique NamemRNA_P-fluviatile_contig16.2714.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:1105510..1106167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size658
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2714.1prot_P-fluviatile_contig16.2714.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 1105707..1106078 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.1542816-UTR-P-fluviatile_contig16:1105509..11057061622815679.1542816-UTR-P-fluviatile_contig16:1105509..1105706Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1105510..1105706 +
1693562884.4800858-UTR-P-fluviatile_contig16:1105509..11057061693562884.4800858-UTR-P-fluviatile_contig16:1105509..1105706Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1105510..1105706 +
1622815679.178146-UTR-P-fluviatile_contig16:1106078..11061671622815679.178146-UTR-P-fluviatile_contig16:1106078..1106167Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1106079..1106167 +
1693562884.4999006-UTR-P-fluviatile_contig16:1106078..11061671693562884.4999006-UTR-P-fluviatile_contig16:1106078..1106167Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 1106079..1106167 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815679.1646235-CDS-P-fluviatile_contig16:1105706..11060781622815679.1646235-CDS-P-fluviatile_contig16:1105706..1106078Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1105707..1106078 +
1693562884.4899437-CDS-P-fluviatile_contig16:1105706..11060781693562884.4899437-CDS-P-fluviatile_contig16:1105706..1106078Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 1105707..1106078 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2714.1

>prot_P-fluviatile_contig16.2714.1 ID=prot_P-fluviatile_contig16.2714.1|Name=mRNA_P-fluviatile_contig16.2714.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=124bp
MAGRDMAVIRGGLAAAAATAEVVVEAAAVAPAESTPAGQPVAAAAAGTTR
PASAFAKRGAIAVTNRSEDNERPDDTSSRCIKRGPSDVRSGSDGAHTHGP
VSSEDAGQSAASIETTAARAITA*
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mRNA from alignment at P-fluviatile_contig16:1105510..1106167+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2714.1 ID=mRNA_P-fluviatile_contig16.2714.1|Name=mRNA_P-fluviatile_contig16.2714.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=658bp|location=Sequence derived from alignment at P-fluviatile_contig16:1105510..1106167+ (Porterinema fluviatile SAG_2381)
CGGGCAGCGACGCGTCCCGACTCATTGAAACGGAAGTACTGACGGTGTCA
GCCAAAACGTGGATCAGACCGAAAGCGGCGGAAGCTGAGGCGGCGTCGCC
GACTGAATCGTCAGAGCTCCTAGGGTCACTCCTCCAGCCGAAAATCAACG
CCACAAGTGGGGACGTCACCAGCGGATGTGAGGTCACCGAGCACGCTATG
GCGGGCAGGGACATGGCGGTCATACGAGGGGGGCTGGCGGCAGCAGCGGC
AACAGCGGAGGTGGTGGTAGAGGCGGCGGCAGTGGCTCCAGCTGAAAGCA
CGCCGGCCGGGCAGCCGGTGGCGGCGGCCGCAGCGGGAACTACTCGACCT
GCCTCCGCATTTGCGAAGAGAGGAGCGATCGCCGTGACCAACCGATCCGA
GGACAACGAACGACCTGACGATACCTCCTCCAGGTGCATCAAGCGTGGGC
CCTCCGACGTTCGCTCGGGCAGCGACGGTGCCCACACCCACGGACCCGTG
AGTTCCGAGGACGCCGGCCAGAGCGCGGCCTCGATCGAGACAACGGCCGC
GAGAGCGATTACGGCATAGCCGACTGGATAGTCGGCGCCCCCGTGGCCGT
CCCTCCAGTCGAAAATCGCCGCCGCGAACGAGAGAAAACGACGGCGTCCT
CAGGCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:1105510..1106167+

>mRNA_P-fluviatile_contig16.2714.1 ID=mRNA_P-fluviatile_contig16.2714.1|Name=mRNA_P-fluviatile_contig16.2714.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=744bp|location=Sequence derived from alignment at P-fluviatile_contig16:1105510..1106167+ (Porterinema fluviatile SAG_2381)
ATGGCGGGCAGGGACATGGCGGTCATACGAGGGGGGCTGGCGGCAGCAGC
GGCAACAGCGGAGGTGGTGGTAGAGGCGGCGGCAGTGGCTCCAGCTGAAA
GCACGCCGGCCGGGCAGCCGGTGGCGGCGGCCGCAGCGGGAACTACTCGA
CCTGCCTCCGCATTTGCGAAGAGAGGAGCGATCGCCGTGACCAACCGATC
CGAGGACAACGAACGACCTGACGATACCTCCTCCAGGTGCATCAAGCGTG
GGCCCTCCGACGTTCGCTCGGGCAGCGACGGTGCCCACACCCACGGACCC
GTGAGTTCCGAGGACGCCGGCCAGAGCGCGGCCTCGATCGAGACAACGGC
CGCGAGAGCGATTACGGCATAGATGGCGGGCAGGGACATGGCGGTCATAC
GAGGGGGGCTGGCGGCAGCAGCGGCAACAGCGGAGGTGGTGGTAGAGGCG
GCGGCAGTGGCTCCAGCTGAAAGCACGCCGGCCGGGCAGCCGGTGGCGGC
GGCCGCAGCGGGAACTACTCGACCTGCCTCCGCATTTGCGAAGAGAGGAG
CGATCGCCGTGACCAACCGATCCGAGGACAACGAACGACCTGACGATACC
TCCTCCAGGTGCATCAAGCGTGGGCCCTCCGACGTTCGCTCGGGCAGCGA
CGGTGCCCACACCCACGGACCCGTGAGTTCCGAGGACGCCGGCCAGAGCG
CGGCCTCGATCGAGACAACGGCCGCGAGAGCGATTACGGCATAG
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