mRNA_P-fluviatile_contig16.2705.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig16.2705.1 vs. uniprot
Match: D8LDA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA8_ECTSI) HSP 1 Score: 389 bits (998), Expect = 2.540e-126 Identity = 263/535 (49.16%), Postives = 302/535 (56.45%), Query Frame = 1
Query: 199 RVGGGEAGTGMGMGSFSRGAPRRHMAIHEYAVGWNGPSTEPPPRVRLLLLSDVDLVSAGRIVEWAVQGGEVFDLCAVCGDFVPRPAGWSAADETEEQLSAEEGEMSATLA-----QLEHTVCRVVYVPGPLDPVMPSIRLSRS----------TRQKRGTAAVAGKRVGDAASRGEGAVEGAEGGLLQLTPTSKNLFRRNLRLAPGLSMAGFTEEPECLVGRRGSSSISSNSSSKGGGAGVKGTRYAHGDDQTLMTLRALCRSGGSSSRRXXXXXXXXXXXXAGRAAP---ESVILLTRLGGAARPAT----------------ASDNAGGSDTTARAPVAAATAAGGTSPGESEEVITAERLRYLWTQYSAAPMAVAGTRGGXXXXXXXXSLLLHVCAGPGASLAVREALSE--AIGVGEAGRGGGRSXXXXXXXXXGRGRIGGCTVAALGSLREHGAYCVVELDMPIRARHADQRYGGXXXXXXXXXXXXXDGPRWSVASLEFGRVEGFYAEREAARRRLAHGAPGNFVLNFD 1695
+ GGG A G+G+ FSRG P RHMAI EYAV WNGPST PPPR+RLLLL+DVDL SAGRIVEWA+QGG+ FDLCAVCGDFVPRP GWS ETEEQLSAEEGEMS+TL QLE+TVCRV+YVPGPLDPV+PSIRL R+ +R AA G G A G +G + +LQLTPTSKN+ RRNLRLAPGLS AGF+E+P G + G G G G +DQT L++L RSGG AG+AAP ESVILLTRLGG RP S++ DT + A A G + E +E TA RLR LWT+ + A +G RG LLLH CAGPG LAVREAL E A VG G GG G GG TVAALGSLR+HGAYCVVELDMP + G WSVAS+ FGRVE + EA R +LAH A G+FVLNF+
Sbjct: 10 KEGGGSARLGIGI--FSRGPPSRHMAIEEYAVDWNGPSTAPPPRLRLLLLADVDLASAGRIVEWAIQGGKAFDLCAVCGDFVPRPEGWSPNGETEEQLSAEEGEMSSTLGKLQATQLENTVCRVIYVPGPLDPVIPSIRLPRTRNTAAVPTTASRPPPVAAATPGADAGRGAEGRGGQRDGGKERVLQLTPTSKNVLRRNLRLAPGLSAAGFSEDPNQCPGN-----------TVGAGEGGGGAGDDTPEDQTFAALKSLSRSGGKKG--------------AGKAAPVPPESVILLTRLGGPRRPGXXXXXXXXXXXXXXTPPTSNSNSNQDT-----LNVAKRAAGPTEVEDQEAATAARLRLLWTEPAMAVGPESGPRG--LEDGGGGGLLLHACAGPGTLLAVREALEEGGAEPVGGGGAGGDGDCARGVGCRVG----GGTTVAALGSLRQHGAYCVVELDMPATVPPGPRSGNGSGGVGAKEG--------WSVASVAFGRVEAADGDPEAEREKLAHRATGSFVLNFE 498
BLAST of mRNA_P-fluviatile_contig16.2705.1 vs. uniprot
Match: A0A6H5KN29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN29_9PHAE) HSP 1 Score: 184 bits (466), Expect = 2.680e-49 Identity = 153/345 (44.35%), Postives = 182/345 (52.75%), Query Frame = 1
Query: 709 LLQLTPTSKNLFRRNLRLAPGLSMAGFTEEPECLVGRRGSSSISSNSSSKGGGAGVKGTRYAHGDDQTLMTLRALCRSGGSSSRRXXXXXXXXXXXXAGRAAP---ESVILLTRLGGAARPATASDNAGGSDTTARAPVAA-----------ATAAGGTSPGESEEVITAERLRYLWTQYSAAPMAVAGTRG--GXXXXXXXXSLLLHVCAGPGASLAVREALSEAIGVGEAGRGGGRSXXXXXXXXXGRGRIGGCTVAALGSLREHGAYCVVELDMPIRARHADQRYGGXXXXXXXXXXXXXDGPRWSVASLEFGRVEGFYAEREAARRRLAHGAPGNFVLNFD 1695
+LQLTPTSKN+ RRNLRLAPGLS AGF+E+P G + + +GGGAG +DQT L++L RSGG AG+AAP ESVILLTRLGG RP + AG + ++A P + A A G + E + TA RLR LWT+ + +G RG XXXXXXX LLLH CAGPG LAVREAL E G GGG + G GG TVAALGSLR+HGAYCVVELDMP G +G WSVAS+ FGRVE + EA R +LA A G+FVLNF+
Sbjct: 52 VLQLTPTSKNVLRRNLRLAPGLSAAGFSEDPNQWPGN-------TVGAGEGGGAGDDTP-----EDQTFAALKSLSRSGGKKG--------------AGKAAPVPPESVILLTRLGGPQRPGAGAGGAGANVSSADTPPVSNSNNDQDTLNVAEGAAGPTALEDQAAATAARLRLLWTEQAMVVGPESGPRGLEEGXXXXXXXXLLLHACAGPGTFLAVREALEEG---GAEPVGGGGAGGDGDCAGVGCRVGGGATVAALGSLRQHGAYCVVELDMPTPVPP------GPRSGNESGGVGAKEG--WSVASVAFGRVEAADGDPEAEREKLARRATGSFVLNFE 359
BLAST of mRNA_P-fluviatile_contig16.2705.1 vs. uniprot
Match: A0A835YTR0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTR0_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 2.840e-16 Identity = 64/177 (36.16%), Postives = 83/177 (46.89%), Query Frame = 1
Query: 331 VRLLLLSDVDLVSAGRIVEW--------------------AVQGGEVFDLCAVCGDFVPRPAGWSAADETEEQLSAEEGEMSATLAQLEHTVCRVVYVPGPLDPVMPSIRLSRSTRQKRGTAAVAGKRVGDAASRGEGAVEGAEGGLLQLTPTSKNLFRRNLRLAPGLSMAGFTEEP 801
+R+LL++DVDL SA ++VEW A G + LC + G F R T E+ +A+EGEMSA +AQLE+ VCR VYVPGP DPVMP+ G QLT TS+N+ + LRL PGL +AG+TE P
Sbjct: 3 LRILLVADVDLPSAIKLVEWILATDYEPESEQQQHTHHQDASHGPTSWSLCCIIGPFAHRERPELV---TPEERAADEGEMSAIIAQLENIVCRAVYVPGPNDPVMPAFT--------------------------------GRYGTPQLTGTSQNINSKVLRLLPGLCIAGYTEAP 144 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig16.2705.1 >prot_P-fluviatile_contig16.2705.1 ID=prot_P-fluviatile_contig16.2705.1|Name=mRNA_P-fluviatile_contig16.2705.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=520bp MSRRTRTGSIPQVGSDAVGVRVGGGEAGTGMGMGSFSRGAPRRHMAIHEYback to top mRNA from alignment at P-fluviatile_contig16:1013454..1023379- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig16.2705.1 ID=mRNA_P-fluviatile_contig16.2705.1|Name=mRNA_P-fluviatile_contig16.2705.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=9926bp|location=Sequence derived from alignment at P-fluviatile_contig16:1013454..1023379- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig16:1013454..1023379- >mRNA_P-fluviatile_contig16.2705.1 ID=mRNA_P-fluviatile_contig16.2705.1|Name=mRNA_P-fluviatile_contig16.2705.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3120bp|location=Sequence derived from alignment at P-fluviatile_contig16:1013454..1023379- (Porterinema fluviatile SAG_2381)back to top |