mRNA_P-fluviatile_contig16.2697.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2697.1
Unique NamemRNA_P-fluviatile_contig16.2697.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:935303..937732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1162
Cds size1050
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2697.1prot_P-fluviatile_contig16.2697.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 935303..937622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.0490997-CDS-P-fluviatile_contig16:935302..9358851622815677.0490997-CDS-P-fluviatile_contig16:935302..935885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 935303..935885 -
1693562881.7892227-CDS-P-fluviatile_contig16:935302..9358851693562881.7892227-CDS-P-fluviatile_contig16:935302..935885Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 935303..935885 -
1622815677.0650704-CDS-P-fluviatile_contig16:936617..9370091622815677.0650704-CDS-P-fluviatile_contig16:936617..937009Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 936618..937009 -
1693562881.8017666-CDS-P-fluviatile_contig16:936617..9370091693562881.8017666-CDS-P-fluviatile_contig16:936617..937009Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 936618..937009 -
1622815677.0790615-CDS-P-fluviatile_contig16:937547..9376221622815677.0790615-CDS-P-fluviatile_contig16:937547..937622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 937548..937622 -
1693562881.8095329-CDS-P-fluviatile_contig16:937547..9376221693562881.8095329-CDS-P-fluviatile_contig16:937547..937622Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 937548..937622 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815677.0928361-UTR-P-fluviatile_contig16:937622..9377321622815677.0928361-UTR-P-fluviatile_contig16:937622..937732Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 937623..937732 -
1693562881.8175862-UTR-P-fluviatile_contig16:937622..9377321693562881.8175862-UTR-P-fluviatile_contig16:937622..937732Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 937623..937732 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2697.1

>prot_P-fluviatile_contig16.2697.1 ID=prot_P-fluviatile_contig16.2697.1|Name=mRNA_P-fluviatile_contig16.2697.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=350bp
MDSDGLDTEAGGEEYSSSVRNSSSPEGHKHRPASVDAFPPGQEKRGDERG
ADVSSTANTTTTATTITAKTHDSNDDNDKNINNKNSSNSCQAPLRTRAMA
WFASLGVGERCRLLTFEDEKWCQLASDMAARLDRRAYPGQEIRFEVQPPV
HGASARATFQATVVEADPGTTAATCILDYYSSLSCSSSPSPPPSPSFFSS
PASSLCGCPPSTAPSPPRSGAAPARRRVKRVVAATSAIEGAALAYGIPPT
AVTFAERFLRDERTFFLAMDAVSHGCFLGEEQANNVAAGAAGGGGGGGGR
GGSAGDITRRKRGDGEKAALFRFGVGMKQTLATRDGKKRGAVLVLQPRRR
back to top

mRNA from alignment at P-fluviatile_contig16:935303..937732-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2697.1 ID=mRNA_P-fluviatile_contig16.2697.1|Name=mRNA_P-fluviatile_contig16.2697.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2430bp|location=Sequence derived from alignment at P-fluviatile_contig16:935303..937732- (Porterinema fluviatile SAG_2381)
GACTAGTTCTCGCTTGCCTCACGCGTGTGGGCGAGCAAGTGGGCTTTCCT
CCCGTCGCTCTGCTCCTACCTTCCCCACCCCATAAACAGAAGTAATCGGA
GGAGGGCCGCATGGACTCTGATGGGCTTGACACGGAGGCCGGGGGTGAAG
AATATTCGTCGAGTGTCAGGAACAGCAGCTCACCGGCAAGTGCAACCTCT
CAATCGATGTGATTTGTGTGCAGCACAGTAAACGGTGCGCAACCGTGCAA
GTTCTGTCGTTCAAGGTAATGCAAGGTACTGGAGCTTGCCCTTCGAGAGC
TCAATGCAGCGTGTGTAGGTGTGGATGTATCGTTTCCTTGGGTCCACGAA
CTTTGATGTCTACCAAGGTTTTGGCTGGCTTTACTCGCTTTCCCGTCGAA
CTAGGAACGAACCCGTACCTGCACGGCGAATGTGCTGTCGAAGCTTATGT
GTGTGCACATCCAGCATCGATGGAGCTAGTCTCGTACCCGTGGTCCAAGC
GACAGGTCGCAAACTGTCAAAGAGTAGGTGCAAAACAGCACACAAAAAGA
GTAGACCCAGAAACGATCTGTCGCTGGATACACGTGACGCGTAGACCACG
CCTTGAAGGCGGTGAAGCTTTGTAACACCACCTTCCCAGACCTCCTCCCC
TTCGGGGACAAATCCCTCACACCCCCCCCGTATTGGGCGATGTTTACGTT
TTAACGCGTGTTTGACTCTGCAGGAGGGCCACAAGCACCGGCCAGCCTCC
GTAGACGCTTTCCCCCCTGGTCAGGAAAAGCGTGGCGATGAGCGTGGTGC
AGATGTAAGCAGCACCGCCAATACCACCACAACCGCCACCACCATCACAG
CCAAAACCCACGACAGCAACGACGACAACGACAAGAACATAAATAACAAA
AATAGCAGCAACAGCTGTCAGGCGCCCCTCCGGACGCGGGCTATGGCGTG
GTTCGCCTCGCTAGGTGTCGGTGAAAGATGCCGGCTGCTGACGTTCGAGG
ACGAAAAGTGGTGCCAGCTTGCGTCGGACATGGCTGCGCGGTTAGACAGG
AGGGCCTACCCGGGGCAGGAGATTCGGTTCGAGGTGCAGCCTCCTGTCCA
CGGTGCTAGTGCCAGGTACGTGCTCATCCTTTCATCTGGTATTTAGTCGT
TGTCGTTGTCGTTGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTTGTTG
TTGTTGTTGTGGTTGTTGTGGTTGTTGTGGTTGTGGGTGTGGTTGTAGTT
GTTCCTCGGACTTGCCTTGGCAGCTGTTGTTGCTGATGGGTGTGTTTGGT
TCAAAGCCATGGTGTCTGTTGCTTTTTTTGGTCTATCTCTGTTACGTTTT
CGTCGTTGTCGGCTTTGATGGTGATGGTAGTGATGATGTTGTCCTGCTTG
ATGTTTCGCTTGCTCTCGTGGCAGCGGTGGCTGTGATAGTAGCAGCGGTA
GATGAGCCAGTTGAAATACCGGATGAGAGGCGAGCCAATCGCGTGGAACA
CTGCACTCCTAGCGCGAGACTCTCTCGTACAGCTCCCTTGAAGGTGATAG
ATCTTCCAGGAGGCTTCGGATGAAATCGTGAACCCGATTATGAGCTCGTC
GATACACGTCAGTTGTTGGCTGGTGGCCCTGAAATCATGCGGGAATCATG
CGGGTCTCGTAGACAACATAGCCCCTTATTGAAGGCGTGGTCCTCGAATG
TAACGACGTTTGAGGCACGACTAGGGAGGCATTTTAGAGACATTCGACAA
TCATAAAGCGTTCTACTTTTCGCGACTTGTCCCCTCGTCCGGCGTCTGGC
TTCCCCCTCCCGCACCTGTCGAATCACCAACACACACACAAAAACAGGGC
CACCTTTCAGGCGACCGTTGTCGAAGCCGATCCGGGAACGACTGCGGCTA
CCTGCATCCTAGACTACTACTCTTCTCTTTCTTGTTCTTCCTCTCCTTCT
CCTCCTCCTTCTCCCTCTTTCTTCTCCTCTCCCGCTTCATCATTGTGCGG
CTGCCCGCCGTCGACGGCACCATCGCCACCGAGAAGCGGGGCCGCACCAG
CGAGACGAAGAGTGAAGCGCGTTGTCGCAGCGACGAGCGCCATCGAGGGC
GCGGCGCTGGCGTACGGAATCCCCCCGACGGCGGTGACGTTCGCCGAGAG
GTTCTTGAGGGACGAGCGGACATTTTTCTTAGCGATGGACGCCGTATCCC
ACGGCTGTTTCCTCGGTGAGGAGCAAGCAAACAACGTAGCCGCTGGCGCT
GCTGGCGGCGGCGGCGGCGGCGGCGGAAGAGGAGGCTCTGCCGGAGACAT
CACCCGAAGAAAACGCGGCGATGGCGAAAAGGCAGCGCTTTTCCGATTCG
GCGTTGGGATGAAACAGACGCTTGCGACACGCGATGGGAAGAAGAGAGGT
GCCGTTTTGGTGCTTCAGCCACGGCGGCGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig16:935303..937732-

>mRNA_P-fluviatile_contig16.2697.1 ID=mRNA_P-fluviatile_contig16.2697.1|Name=mRNA_P-fluviatile_contig16.2697.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=2100bp|location=Sequence derived from alignment at P-fluviatile_contig16:935303..937732- (Porterinema fluviatile SAG_2381)
ATGGACTCTGATGGGCTTGACACGGAGGCCGGGGGTGAAGAATATTCGTC
GAGTGTCAGGAACAGCAGCTCACCGATGGACTCTGATGGGCTTGACACGG
AGGCCGGGGGTGAAGAATATTCGTCGAGTGTCAGGAACAGCAGCTCACCG
GAGGGCCACAAGCACCGGCCAGCCTCCGTAGACGCTTTCCCCCCTGGTCA
GGAAAAGCGTGGCGATGAGCGTGGTGCAGATGTAAGCAGCACCGCCAATA
CCACCACAACCGCCACCACCATCACAGCCAAAACCCACGACAGCAACGAC
GACAACGACAAGAACATAAATAACAAAAATAGCAGCAACAGCTGTCAGGC
GCCCCTCCGGACGCGGGCTATGGCGTGGTTCGCCTCGCTAGGTGTCGGTG
AAAGATGCCGGCTGCTGACGTTCGAGGACGAAAAGTGGTGCCAGCTTGCG
TCGGACATGGCTGCGCGGTTAGACAGGAGGGCCTACCCGGGGCAGGAGAT
TCGGTTCGAGGTGCAGCCTCCTGTCCACGGTGCTAGTGCCAGGAGGGCCA
CAAGCACCGGCCAGCCTCCGTAGACGCTTTCCCCCCTGGTCAGGAAAAGC
GTGGCGATGAGCGTGGTGCAGATGTAAGCAGCACCGCCAATACCACCACA
ACCGCCACCACCATCACAGCCAAAACCCACGACAGCAACGACGACAACGA
CAAGAACATAAATAACAAAAATAGCAGCAACAGCTGTCAGGCGCCCCTCC
GGACGCGGGCTATGGCGTGGTTCGCCTCGCTAGGTGTCGGTGAAAGATGC
CGGCTGCTGACGTTCGAGGACGAAAAGTGGTGCCAGCTTGCGTCGGACAT
GGCTGCGCGGTTAGACAGGAGGGCCTACCCGGGGCAGGAGATTCGGTTCG
AGGTGCAGCCTCCTGTCCACGGTGCTAGTGCCAGGGCCACCTTTCAGGCG
ACCGTTGTCGAAGCCGATCCGGGAACGACTGCGGCTACCTGCATCCTAGA
CTACTACTCTTCTCTTTCTTGTTCTTCCTCTCCTTCTCCTCCTCCTTCTC
CCTCTTTCTTCTCCTCTCCCGCTTCATCATTGTGCGGCTGCCCGCCGTCG
ACGGCACCATCGCCACCGAGAAGCGGGGCCGCACCAGCGAGACGAAGAGT
GAAGCGCGTTGTCGCAGCGACGAGCGCCATCGAGGGCGCGGCGCTGGCGT
ACGGAATCCCCCCGACGGCGGTGACGTTCGCCGAGAGGTTCTTGAGGGAC
GAGCGGACATTTTTCTTAGCGATGGACGCCGTATCCCACGGCTGTTTCCT
CGGTGAGGAGCAAGCAAACAACGTAGCCGCTGGCGCTGCTGGCGGCGGCG
GCGGCGGCGGCGGAAGAGGAGGCTCTGCCGGAGACATCACCCGAAGAAAA
CGCGGCGATGGCGAAAAGGCAGCGCTTTTCCGATTCGGCGTTGGGATGAA
ACAGACGCTTGCGACACGCGATGGGAAGAAGAGAGGTGCCGTTTTGGTGC
TTCAGCCACGGCGGCGGGGCCACCTTTCAGGCGACCGTTGTCGAAGCCGA
TCCGGGAACGACTGCGGCTACCTGCATCCTAGACTACTACTCTTCTCTTT
CTTGTTCTTCCTCTCCTTCTCCTCCTCCTTCTCCCTCTTTCTTCTCCTCT
CCCGCTTCATCATTGTGCGGCTGCCCGCCGTCGACGGCACCATCGCCACC
GAGAAGCGGGGCCGCACCAGCGAGACGAAGAGTGAAGCGCGTTGTCGCAG
CGACGAGCGCCATCGAGGGCGCGGCGCTGGCGTACGGAATCCCCCCGACG
GCGGTGACGTTCGCCGAGAGGTTCTTGAGGGACGAGCGGACATTTTTCTT
AGCGATGGACGCCGTATCCCACGGCTGTTTCCTCGGTGAGGAGCAAGCAA
ACAACGTAGCCGCTGGCGCTGCTGGCGGCGGCGGCGGCGGCGGCGGAAGA
GGAGGCTCTGCCGGAGACATCACCCGAAGAAAACGCGGCGATGGCGAAAA
GGCAGCGCTTTTCCGATTCGGCGTTGGGATGAAACAGACGCTTGCGACAC
GCGATGGGAAGAAGAGAGGTGCCGTTTTGGTGCTTCAGCCACGGCGGCGG
back to top