mRNA_P-fluviatile_contig16.2681.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2681.1
Unique NamemRNA_P-fluviatile_contig16.2681.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2681.1 vs. uniprot
Match: D7FN01_ECTSI (Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN01_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 4.270e-76
Identity = 114/152 (75.00%), Postives = 133/152 (87.50%), Query Frame = 1 
Query:    1 GNCRVNQQLTGRSEPTNLVGVDLGVPDGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMQQLKEFVPRALMLDTQHEAHSIKGAAANLMCHRLRLAALYMERAGQVGTRLKEGMSGFNSVKGDLDRGMEVLERELALFKVMLKQKKLV 456
            G+ + +++ + +    NLVGV LGVPD TEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHM+QL+EF+PR  M DTQHEAHSIKGAAANLMCHRLRL+ALY+ERAGQVGTRL+EG S FNSVK DL +G +VLEREL+LF+ +LK+KKLV
Sbjct:    7 GDKKASEKSSDQGSSANLVGVQLGVPDDTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMEQLREFIPRGAMRDTQHEAHSIKGAAANLMCHRLRLSALYLERAGQVGTRLQEGSSDFNSVKEDLKKGQQVLERELSLFQDLLKKKKLV 158
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BLAST of mRNA_P-fluviatile_contig16.2681.1 vs. uniprot
Match: A0A7S2XTL1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XTL1_9STRA)

HSP 1 Score: 107 bits (267), Expect = 4.390e-26
Identity = 64/138 (46.38%), Postives = 88/138 (63.77%), Query Frame = 1 
Query:   43 PTNLVGVDLGVPDGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMQQLKEFVPRALMLDTQHEAHSIKGAAANLMCHRLRLAALYMERAGQVGTRLKEGMSGFNSVKGDLDRGMEVLERELALFKVMLKQKKLV 456
            P   +G DL       VI+WA A++Q   D  FL ELL DL+NE+ AH++ LK  VP       + +AHSIKGAAANLMCHRLR AAL++E+AG  GT  K  ++G +++   LD+G+E L  E   F  +LK+K+L+
Sbjct:   90 PGPSIGADL------VVINWAEAMEQVGDDEEFLHELLGDLFNETQAHVESLKASVPSRDTETVRQKAHSIKGAAANLMCHRLREAALFLEKAGMSGT--KGELTG-DALNQTLDKGLEALLTEFDSFGKVLKEKELI 218
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BLAST of mRNA_P-fluviatile_contig16.2681.1 vs. uniprot
Match: A0A835Z3I2_9STRA (Hpt domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3I2_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 7.020e-22
Identity = 50/127 (39.37%), Postives = 77/127 (60.63%), Query Frame = 1 
Query:   76 PDGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMQQLKEFVPRALMLDTQHEAHSIKGAAANLMCHRLRLAALYMERAGQVGTRLKEGMSGFNSVKGDLDRGMEVLERELALFKVMLKQKKLV 456
            P    V+DW  A++QC GD  FL+ELLVDLW ES++H+++L+  VP   + +T++ AH++KGAA NLMC  L  A L +E+    GT        F ++K  L     V++ E+A F+  L ++ L+
Sbjct:   16 PQPLVVVDWTMALEQCGGDEEFLKELLVDLWTESSSHLEELQSTVPARNITETRNIAHTMKGAAGNLMCFALHHACLTLEKTAHEGTSTIPTEQLFEAMKDAL----VVIQGEMARFEEYLHKRALI 138
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BLAST of mRNA_P-fluviatile_contig16.2681.1 vs. uniprot
Match: A0A6S9GU07_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9GU07_HETAK)

HSP 1 Score: 79.3 bits (194), Expect = 5.040e-16
Identity = 52/126 (41.27%), Postives = 71/126 (56.35%), Query Frame = 1 
Query:   79 DGTEVIDWAAAVDQCSGDVSFLEELLVDLWNESNAHMQQLKEFVPRALMLDT--------QHEAHSIKGAAANLMCHRLRLAALYMERAGQVGTRLKEGMSGFNSVKGD-----LDRGMEVLEREL 417
            D  E+I W AA++QC+GD  FL+ELL D   E+ AH Q L++ V      DT        +  AHSIKGAAANLMC++LR AA  +E+ G       +G+SG   ++GD        G+  LE E+
Sbjct:    9 DDDEIIGWEAALEQCAGDEEFLQELLQDFSVETAAHFQALQKAVDALTPEDTAGDEADAIRRAAHSIKGAAANLMCNKLRDAAQSLEKTGM------QGVSG--EIEGDSFIELATEGLATLESEV 126
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BLAST of mRNA_P-fluviatile_contig16.2681.1 vs. uniprot
Match: A0A7S2DUJ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DUJ5_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.360e-5
Identity = 35/90 (38.89%), Postives = 45/90 (50.00%), Query Frame = 1 
Query:   94 IDWAAAVDQCSGDVSFLEELLVDLWNESNAHMQQLKEFVPRA---LMLDTQHEAHSIKGAAANLMCHRLRLAALYMERAGQVGTRLKEGM 354
            I+W  A  QC GD  FL ELL D   E     + L   +             +AH+IKGAAANLMCH LR  +  +E+  +   + KEGM
Sbjct:   11 INWDEAKGQCDGDTEFLNELLNDFMVELLTAGEMLDRKIKSKEGNWKTVASQQAHAIKGAAANLMCHELRSVSETLEKLCK-SLQSKEGM 99
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FN01_ECTSI4.270e-7675.00Hpt domain protein n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2XTL1_9STRA4.390e-2646.38Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835Z3I2_9STRA7.020e-2239.37Hpt domain protein n=1 Tax=Tribonema minus TaxID=3... [more]
A0A6S9GU07_HETAK5.040e-1641.27Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2DUJ5_9STRA1.360e-538.89Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:811124..813371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue3.1e-59
Seed eggNOG ortholog2880.D7FN01
EggNOG OGs2EUJB@1,2SWQ8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size459
Cds size459
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2681.1prot_P-fluviatile_contig16.2681.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 811124..813371 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815689.9196708-CDS-P-fluviatile_contig16:811123..8112431622815689.9196708-CDS-P-fluviatile_contig16:811123..811243Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 811124..811243 +
1693562946.3968434-CDS-P-fluviatile_contig16:811123..8112431693562946.3968434-CDS-P-fluviatile_contig16:811123..811243Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 811124..811243 +
1622815689.9355226-CDS-P-fluviatile_contig16:811643..8117511622815689.9355226-CDS-P-fluviatile_contig16:811643..811751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 811644..811751 +
1693562946.406618-CDS-P-fluviatile_contig16:811643..8117511693562946.406618-CDS-P-fluviatile_contig16:811643..811751Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 811644..811751 +
1622815689.9453657-CDS-P-fluviatile_contig16:812413..8125451622815689.9453657-CDS-P-fluviatile_contig16:812413..812545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 812414..812545 +
1693562946.4156935-CDS-P-fluviatile_contig16:812413..8125451693562946.4156935-CDS-P-fluviatile_contig16:812413..812545Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 812414..812545 +
1622815689.9558663-CDS-P-fluviatile_contig16:813272..8133711622815689.9558663-CDS-P-fluviatile_contig16:813272..813371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 813273..813371 +
1693562946.425796-CDS-P-fluviatile_contig16:813272..8133711693562946.425796-CDS-P-fluviatile_contig16:813272..813371Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 813273..813371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2681.1

>prot_P-fluviatile_contig16.2681.1 ID=prot_P-fluviatile_contig16.2681.1|Name=mRNA_P-fluviatile_contig16.2681.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=153bp
GNCRVNQQLTGRSEPTNLVGVDLGVPDGTEVIDWAAAVDQCSGDVSFLEE
LLVDLWNESNAHMQQLKEFVPRALMLDTQHEAHSIKGAAANLMCHRLRLA
ALYMERAGQVGTRLKEGMSGFNSVKGDLDRGMEVLERELALFKVMLKQKK
LV*
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mRNA from alignment at P-fluviatile_contig16:811124..813371+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2681.1 ID=mRNA_P-fluviatile_contig16.2681.1|Name=mRNA_P-fluviatile_contig16.2681.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2248bp|location=Sequence derived from alignment at P-fluviatile_contig16:811124..813371+ (Porterinema fluviatile SAG_2381)
GGGAATTGCCGAGTAAATCAGCAGCTAACGGGCCGAAGTGAACCGACGAA
CCTTGTGGGCGTGGATCTGGGGGTGCCGGATGGCACCGAGGTCATCGACT
GGGCTGCTGCCGTCGACCAGGTTATTGGGATTTTAAATATATCATACGTG
TCCACGCAAGAATAATTTGTTCAGCGGAAGAGGTGGCCAGCATGGCCTTT
TAGTGAATTTGGAAGGGGTGTGTTGGCTTCCTGTTCCGATTCCCGTGTGA
TTGCGTGGGAGCTCTTTTGCGATTTGTTCCATAAGAAAGCTGCATCGGAA
GCGCTGAAAGAACATCAATGACGAACCGGCGTATGGCCGCAGACCCCGAC
AGTGGGTGATGCGGTAAATTTTTCGCTTGTTGCGCCGTTGATAACGCAGC
AAATACTACCGTTCGCAGTTTCTCGAAGACACTTTGCCGGTTCTGACTCC
TTATGTTCTGTGTCACTCCTTTCGCGCCTGTTTTCGACCGGTCGTGCCCT
TTCTCAAATGCCGACGTCAGTGTTCCGGGGACGTATCATTCCTCGAGGAG
CTACTAGTAGATCTGTGGAACGAATCCAACGCGCACATGCAGCAGCTCAA
GGAATTTGTTCCGCGCGCTCTGATGCTTGTGAGTATTGTACGCGCTTTCG
GTTTTCGAGATCTACCACGTGAATCAGCTCGGCAGTTTTGTGTCGTTACA
CTCAGTTGGCCGTAGTAGATTTTTTTTATTACATATCGAAGCGTGAAAGT
CGTCGCACCGTAGTAAGGAGTTTCTTTTTGTGCGAATATTGGGCACCGCA
TGTTTCTACTTTTCTGTGCTGATGCAGTGTTGTCTTAAAATTGTTGAACG
AAAACGGCGATCTGTCTTGTCAATCCAGCAGGAACTATGTTTTGAACTTG
AGTTTAGGATATCCAATTGCGTTGCTGGCAAAATCACATGTACCAATGTT
GCTGTGCACGAACGCGTTTTGGTGATCCATGCCCCCCCCCGCCCGGCCTC
AGGCACCTCCTTCGTGCTGCCGGCATTCTCTCGCGCGTGTGCGTGCATGT
TCGCTTTAATTATTTTGCGATGCTGTGCTGCCCAGCGAACCAATGAAATG
ACGTTGTTCAAGTTGGTCGAAACAACAAAAAGTTTCTTGCGTATCGCCCC
GCACCCCGAGTTTTTGCGGGAGTATTTTGCATTCATGTGTTTCCTGTATG
AATGAACCGAATTTGTTTGTCCCTTGCGCCCGTCTTTCGCGCCATCCATC
GCTGCGAACAATCTGTTTCCGAAACGTCGGCAATGCCCAGGACACGCAGC
ACGAAGCTCACTCGATCAAGGGCGCAGCCGCCAACCTGATGTGTCACCGC
TTGCGCTTGGCCGCATTGTACATGGAACGGGCAGGTCAAGTAGGCACGAG
GCTTAAGGAAGGTATGTCTGGAGTTCAGAGTAGCTGACGAACATTTTAGG
CGACGAAGCGTCCAAAATGATCTCGATATTCCAGTGGCCCGAGGTAGCGG
AAGATGAATTTTTGGCTTAAGCTGGCAGCGGTTGGAGTTCCACTACTAGT
CCTTAAATAAAAAGCTGTGATGAAAAGCTTGGGGACAACTCCTTTTCACG
TCCTATAAGAACGTCAAATAAGAAAGGGAACTAATTTTCCTTTACAGGAT
CATGAAAATGTCTGGGACCCGATCAAGATAATATCTGGGACCCTGTCATT
GCCGTAGCTATCTCTTCCGTTAGCCGCTATCGCTGGTGACCCTTTGCGTT
GCCAAGCACGAACCACGGCGCCGCCCGATGTCGCGGGATTGTTTTCTTTA
CGCGTCAGCATGCAATATGGTACATGCTCGCCCCCGACAAGTTCGAAAAG
GTGGAAGAGAAACAGCAAAGGAAAAGGACGAACCGCCTAAGCCAGAGAGG
AGAGCGGCGACTCCACGGGGCTTTGCCACACCTTACCGACGGGGCCTGAA
GGCTTGCATTGCAGTAACGCTTTGTGCGTGATAAAGAGGCCCACAGCAGT
GACCAGGGACTTTGGAAACCCTACTTTTGCGTAGAAGCCAAGAAGCGAGC
TCGATAATGTATTTGTACGTGTGTTAGGTCGCTTTCTTTGAGTCACCTCC
TCGCACCATTTTGGCATTGATCGTTTGCGGCACCACAGGTTCGGAGGAGT
TTAACTCTGTGAAGGGTGATCTTGACAGAGGCATGGAAGTGCTCGAAAGG
GAGCTGGCGCTGTTTAAGGTCATGCTCAAGCAGAAGAAGCTCGTTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:811124..813371+

>mRNA_P-fluviatile_contig16.2681.1 ID=mRNA_P-fluviatile_contig16.2681.1|Name=mRNA_P-fluviatile_contig16.2681.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=918bp|location=Sequence derived from alignment at P-fluviatile_contig16:811124..813371+ (Porterinema fluviatile SAG_2381)
GGGAATTGCCGAGTAAATCAGCAGCTAACGGGCCGAAGTGAACCGACGAA
CCTTGTGGGCGTGGATCTGGGGGTGCCGGATGGCACCGAGGTCATCGACT
GGGCTGCTGCCGTCGACCAGGGGAATTGCCGAGTAAATCAGCAGCTAACG
GGCCGAAGTGAACCGACGAACCTTGTGGGCGTGGATCTGGGGGTGCCGGA
TGGCACCGAGGTCATCGACTGGGCTGCTGCCGTCGACCAGTGTTCCGGGG
ACGTATCATTCCTCGAGGAGCTACTAGTAGATCTGTGGAACGAATCCAAC
GCGCACATGCAGCAGCTCAAGGAATTTGTTCCGCGCGCTCTGATGCTTTG
TTCCGGGGACGTATCATTCCTCGAGGAGCTACTAGTAGATCTGTGGAACG
AATCCAACGCGCACATGCAGCAGCTCAAGGAATTTGTTCCGCGCGCTCTG
ATGCTTGACACGCAGCACGAAGCTCACTCGATCAAGGGCGCAGCCGCCAA
CCTGATGTGTCACCGCTTGCGCTTGGCCGCATTGTACATGGAACGGGCAG
GTCAAGTAGGCACGAGGCTTAAGGAAGGTATGTCTGGAGACACGCAGCAC
GAAGCTCACTCGATCAAGGGCGCAGCCGCCAACCTGATGTGTCACCGCTT
GCGCTTGGCCGCATTGTACATGGAACGGGCAGGTCAAGTAGGCACGAGGC
TTAAGGAAGGTATGTCTGGATTTAACTCTGTGAAGGGTGATCTTGACAGA
GGCATGGAAGTGCTCGAAAGGGAGCTGGCGCTGTTTAAGGTCATGCTCAA
GCAGAAGAAGCTCGTTTGATTTAACTCTGTGAAGGGTGATCTTGACAGAG
GCATGGAAGTGCTCGAAAGGGAGCTGGCGCTGTTTAAGGTCATGCTCAAG
CAGAAGAAGCTCGTTTGA
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