mRNA_P-fluviatile_contig16.2676.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2676.1
Unique NamemRNA_P-fluviatile_contig16.2676.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2676.1 vs. uniprot
Match: D7FMZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMZ7_ECTSI)

HSP 1 Score: 420 bits (1080), Expect = 5.870e-147
Identity = 210/259 (81.08%), Postives = 233/259 (89.96%), Query Frame = 1 
Query:    1 QVEDFEIDTEIDTQKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSIRQLGSISSWLPENARFIFSGALVPKQIKSLLKMKGLSAVVARDAESVLAMEEAMDAERKRLAAKGLSRISQSRERFLLERGGNDKGANSQGPVGSLVSGLRAFVRIEEGHSVDEVVNIIETIGKTCRNISVVGLWAGDMDHDECLQMLEAVRNKTGLPNLRVAMEHFGPKSAQWFKSTLGPRRGPIMWTFNYE 777
            +VEDFEID E+DT+KLE+FGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRS+RQL SISS LP+N+RFIFSGAL+PKQIK +LKMKGLSAVVARDAESV+AMEE++DAERKRLAAKGLSRISQSRER+LLE+GG + GAN +GPVGSLVSGLR FVRI+EG SVD+V  I+ TI +TCRNISVVGLW GDMD + CL MLEAVR K+G+ NLRVAMEH GPKSA WF    G RRGPIMWTFNYE
Sbjct:    5 EVEDFEIDMEVDTEKLEVFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSVRQLLSISSSLPDNSRFIFSGALIPKQIKRILKMKGLSAVVARDAESVVAMEESIDAERKRLAAKGLSRISQSRERYLLEKGGGENGANQRGPVGSLVSGLRTFVRIQEGQSVDDVAEIVNTIEQTCRNISVVGLWGGDMDPETCLNMLEAVRTKSGISNLRVAMEHLGPKSAGWFTGLRGARRGPIMWTFNYE 263
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BLAST of mRNA_P-fluviatile_contig16.2676.1 vs. uniprot
Match: A0A836CMK3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMK3_9STRA)

HSP 1 Score: 184 bits (468), Expect = 9.100e-54
Identity = 105/261 (40.23%), Postives = 165/261 (63.22%), Query Frame = 1 
Query:    1 QVEDFEIDTEIDTQKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSIRQLGSISSWLPENARFIFSGALVPKQIKSLLKMKGLSAVVARDAESVLAMEEAMDAERKRLAAKGLSRISQSRERFLLERGGNDKGANSQGPVGSLVSGLRAFVRI-EEGHSVDEVVNI-IETIGKTCRNISVVGLWAGDMDHDECLQMLEAVRNKTGLPNLRVAMEHFGPKSAQWFKSTLGPRRGPIMWTFNYE 777
            +VE F++D +ID  +L+   T IT+VK +G VPASS++VYDC+HG+WLL Q+AYDRKI+LF+SRS   +  +++ +P++A+ +F+GA +PK  K LLK++ L +VV  DA +  A+ +AM  ER RLAAKGLS++S++RER+L   GG    A    P  +++  +R F+++ EEG +    V   +  + + C  + V+GLW         LQ ++A  N    P L+V + + G + +  +   LG  RG I+WTF +E
Sbjct:   41 EVESFDVDFDID--RLDAMNTYITDVKQKGYVPASSNIVYDCTHGQWLLMQVAYDRKIKLFASRSAAGVADLAAIVPDDAQVLFTGAFLPKHAKRLLKLRNLHSVVVPDAAAARALSDAMADERARLAAKGLSKVSRARERYLTAGGG----AQLAPPDTAVLERIRVFLKLPEEGSTTAAAVAATLAEVREGCPGVEVMGLWGEGRGAYALLQEVKAAVNA---PKLKVTLPYRGVEESFKWNQGLGEGRGSIIWTFEFE 292
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BLAST of mRNA_P-fluviatile_contig16.2676.1 vs. uniprot
Match: A0A6V1VHY5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VHY5_HETAK)

HSP 1 Score: 69.3 bits (168), Expect = 5.270e-10
Identity = 57/218 (26.15%), Postives = 111/218 (50.92%), Query Frame = 1 
Query:   13 FEIDTEIDTQKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLAQMAYDRKIRLFSSRSIRQLGSISSWLPE--NARFIFSGALVPKQIKSLLKMKGLSAVVARDAESVLAMEEAMDAERKRLAAKGLSRISQSRERFLLERGGNDKGANSQGPVGSLVSGLRAFVRIEEGHSVDEVVNIIETIGKTCRNISVVGLWAGDMDHDECLQMLEAVRNK 660
            FE+D  ID   + +F   IT +K   +   ++ +  +C+  EW+ AQ+A DR I  F SRS   L   +   P+  +A  + +G ++ KQ+K L K   ++ +   + E    + + + AE  R   K  S++S SR+++L  + G+ +   ++G + S    LR     ++  +  ++++ IE I K C N++  G+    +D  E ++   A+++K
Sbjct:   82 FEMD--IDGDAINLFNERITTLK---KALPTARICLECTGLEWIFAQIAQDRGIDAFYSRSATALRKYAETAPDVADATLLLTGKVLEKQVKRLAKFPEVNCIAVSNKEEADILSQGLAAEIARAMKKRRSKVSASRDKYLDAKTGDSR---AKGYLESANYILRISSE-QQDKAGQQLLDDIEAIEKDCENLNFHGVI---LDSVESIETYRAIKDK 287
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMZ7_ECTSI5.870e-14781.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMK3_9STRA9.100e-5440.23Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6V1VHY5_HETAK5.270e-1026.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:748772..752408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_002900.1
Exons6
Model size783
Cds size783
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2676.1prot_P-fluviatile_contig16.2676.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 748772..752408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815688.9889486-CDS-P-fluviatile_contig16:748771..7488731622815688.9889486-CDS-P-fluviatile_contig16:748771..748873Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 748772..748873 -
1693562942.8770685-CDS-P-fluviatile_contig16:748771..7488731693562942.8770685-CDS-P-fluviatile_contig16:748771..748873Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 748772..748873 -
1622815689.004706-CDS-P-fluviatile_contig16:749309..7494181622815689.004706-CDS-P-fluviatile_contig16:749309..749418Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 749310..749418 -
1693562942.885667-CDS-P-fluviatile_contig16:749309..7494181693562942.885667-CDS-P-fluviatile_contig16:749309..749418Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 749310..749418 -
1622815689.0193818-CDS-P-fluviatile_contig16:750749..7509551622815689.0193818-CDS-P-fluviatile_contig16:750749..750955Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 750750..750955 -
1693562942.8947551-CDS-P-fluviatile_contig16:750749..7509551693562942.8947551-CDS-P-fluviatile_contig16:750749..750955Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 750750..750955 -
1622815689.0349288-CDS-P-fluviatile_contig16:751302..7514261622815689.0349288-CDS-P-fluviatile_contig16:751302..751426Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 751303..751426 -
1693562943.4337244-CDS-P-fluviatile_contig16:751302..7514261693562943.4337244-CDS-P-fluviatile_contig16:751302..751426Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 751303..751426 -
1622815689.0477183-CDS-P-fluviatile_contig16:751663..7517141622815689.0477183-CDS-P-fluviatile_contig16:751663..751714Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 751664..751714 -
1693562944.6566012-CDS-P-fluviatile_contig16:751663..7517141693562944.6566012-CDS-P-fluviatile_contig16:751663..751714Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 751664..751714 -
1622815689.0595064-CDS-P-fluviatile_contig16:752217..7524081622815689.0595064-CDS-P-fluviatile_contig16:752217..752408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 752218..752408 -
1693562945.1708295-CDS-P-fluviatile_contig16:752217..7524081693562945.1708295-CDS-P-fluviatile_contig16:752217..752408Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 752218..752408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2676.1

>prot_P-fluviatile_contig16.2676.1 ID=prot_P-fluviatile_contig16.2676.1|Name=mRNA_P-fluviatile_contig16.2676.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=261bp
QVEDFEIDTEIDTQKLEIFGTIITEVKMEGRVPASSHLVYDCSHGEWLLA
QMAYDRKIRLFSSRSIRQLGSISSWLPENARFIFSGALVPKQIKSLLKMK
GLSAVVARDAESVLAMEEAMDAERKRLAAKGLSRISQSRERFLLERGGND
KGANSQGPVGSLVSGLRAFVRIEEGHSVDEVVNIIETIGKTCRNISVVGL
WAGDMDHDECLQMLEAVRNKTGLPNLRVAMEHFGPKSAQWFKSTLGPRRG
PIMWTFNYEF*
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mRNA from alignment at P-fluviatile_contig16:748772..752408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2676.1 ID=mRNA_P-fluviatile_contig16.2676.1|Name=mRNA_P-fluviatile_contig16.2676.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3637bp|location=Sequence derived from alignment at P-fluviatile_contig16:748772..752408- (Porterinema fluviatile SAG_2381)
CAGGTGGAAGACTTCGAGATCGACACTGAAATAGACACACAAAAGTTGGA
GATATTTGGGACGATTATCACCGAGGTGAAGATGGAGGGACGTGTCCCGG
CCTCGTCTCACTTGGTATATGACTGTTCGCACGGGGAGTGGCTGCTGGCT
CAAATGGCATACGATCGGAAGATCCGTCTGTTCTCGAGCAGGTGCGTGTG
TGGAACTGGAGCACGGAGGTGGTCGGACGCCGACCCTCGTGACCTCGTGT
TGTTTGTTTCTACAATTAATACTTCCCTGCTCTACCTGTGCACGAGTGCC
GGCTTATGCAGGCCTCTCGGATAGGTATGCAACTTGCGAATGCCATGTGA
TTAAAAAAAGGGCGACCTGAGTTGAACCACAAATTCAAATCGCAGGGGTA
CGAATTCTGAATAAATGTGTAATTGGTTTCGATACCCGATTTTTTGCTGG
ACCAGGCATGTGACTTTTGAGGCACGACCGACGTGACCTCGGCTGCTATG
ACATAGGCTCGTTGCAATACGTTTTTGCCGGCCGATGGAATAACAGTAAC
GCTCTTCCACTGCCGTACACAAGAAAACCGCATGCGCATCCCAGCTGCGT
ATCGTGTGCTAGAAGGTTGGCGACCCAGTACACATTGCACCTTGTCATGG
CTAGTGACCTTCCATGATTTATGTGGATCCATCCCTGTGCCCAGGTCGAT
TCGACAGCTCGGGAGTATCTCGTCTTGGTTGCCGGAGAATGCGCGGTGAG
CTGTTAATGAGAGTTTAAATGAGCGGGGGATCGATCCTCTTACTTTGTCG
TAACAAACGTTCGCTCTGCTGACCGGAAGGCGTGTTCTTGAGTTCTTCGA
TCCGGTTCGCCGCAATGCTTGAGGCAGCACTTTTTTTACTAGTTCGTTTA
CATGGAAAATCATTGCACATACGTACTGCAACAAAATGCATCACAAGCGC
TGTCGTTCAATTCTCCCCACCCCCGTGGCCAGATTTATATTTTCGGGGGC
GCTCGTCCCCAAGCAGATCAAGAGCCTTCTAAAAATGAAAGGCCTAAGCG
CGGTTGTAGCCAGAGATGCGGAGAGTGTGCTTGCGATGGAAGAGGCGATG
GATGCGGTAGGTTACCAGGTATCCTTCGACGAAAATGCCTGCTCTCGACT
CTAACAAAGCTGAAAGGAGGTGTTGGTGGCCCCCCCGCCTCCCCCGCTGT
TTTGTGTCTCGCTACTCCAATCAATTCGATGCAGATAAACGGCACGACCT
TCTTGTCTGTTCAGCCACAATCTGTTGTTCAGCTGGGCGGCGGAATGGCC
CACATATTGCATATTTTATCAATCCATCCTATCGTGGTTTACCGGTTGCT
AGAAAATTGTCGCCGCAAATTCGCGATCGATCGAAATTTCCAGGAGCAAC
CAGAAAGCAGAATCTCACCCTTTCGGAATGCGCTGGCGAATTTTGTCTTA
CAGGAGCGCAAGCGATTGGCCGCGAAAGGCCTTTCGAGAATTAGCCAATC
TCGGGAAAGATTTTTGCTTGAGAGAGGGGGGAACGATAAGGGAGCGAACT
CGCAGGGACCGGTGGGAAGCCTGGTCTCTGGGCTCCGTGCGTTTGTCCGA
ATAGAGGAGGGACATTCAGTCGACGAGGTGGTCAACATCATCGAAACCAT
CGGGAAAACGTGAGAAGACTTTGGCGGCCGCAGCGCCTGCTTCTCAGCCG
CGGTGTCACTTGTACGGGGGCACAAGGCAGAAGGTCTATCACTCTAGGCA
CGTTCACTCATTGCCCCACCCGGCGCTTAAGAGGCGTCCGAGAGACGATG
AATATGGCAGCTAGCGTCTTGTGAATGTACCTTCGGTCCCATTCCTGTGC
TGCACTACCGCCATAAATAGATTGCCAAACCCCTTGCTTTTCGCCATTCA
CGATCATCCAGATCCCTTCTTCGACGCCGTATGGCGCAAGACACGTCGGG
ATCATACGACAGACCATGCAGTTCTTGTCTCTTGTTGCGCATTCTGCAAG
TACTCTTACTGCTGCGCTTTCCATGTGGAAGAAGTGGAATGAGGGGGCAC
GCAACCGCACGCGCAAAGGGCAAGAGATTTTTCGATCGATCATCACGTAT
AGTCCACACGAGCGTTGTTTTTGCGCCGGACGCAAGTAAGCAGAGGTTGG
TGCGGGTTCTTGGTTCAACCTGGACGAAATCGAGATCTGCAGCTCAGAGG
GCAAGCGCATACCCCAGCAAGTGCAGAGATCGTAAGCCCGCGGTCGCAAA
AAGTGTTGTCGAAGGAAACAGCATGCGATCCACGACAACCTCTCCTTTCC
ACCGACCACGATCTTTCTTTGAAGAACTTTTCAAGAAATGTGGAACACGG
GAGAAATGATCCTAGACAGGATGCAAGTTCCTATGAGACCGCGAGCAAGC
CAGCACGTGGGAGGTATCGCACACGGGTGTGAAAAAAATCCCGAGCAGGC
GTCGAACTCCGCTCAGCGGGCGGGATATTTTCGGCAAAAATCCTCATTTT
GCATTGCGGTTGCATGCTAACACCGGTGGTTCAAGGCATCACGCGCGAGC
TGCATTGCGCTTCAGCGGTTGCAGATTGTTAACGCAGCTTTTCGTGGGTC
GCCCTACCGCAGTAATGACAGCACCACACAGGACCAAGTTGGTACATTAC
CTTAGAACTAACAAGCCGCCCTATCGGAATATTCAAGCGGCATCGACGGA
GAGAAGCACGCAAATGCATCAAGTCGACGTCAAGGGGAATTGTTGGTACA
ACACGCATCGGATTTCTCGCACGGGAGCGTGCCTTAATGCAACAGCAGTG
ATGAAGTAATCCTCAAATCCGTAGGCGTCGGAACTGCCGCACGATCCTTC
AACGAGAGGATTGCAACACGCCGTTAGAAACGATCCCACCGGCGCGTTTT
CATAGGTACGAGGTAATGAGTTGGAACGCGAAACGCTGACATTTATTTAC
CCATGTCGGCGCTGCTCCGAACTGGTGCATGTTCCGTCAGTTGCAGAAAT
ATTTCTGTGGTCGGGCTGTGGGCAGGCGACATGGACCATGATGAGTGTCT
ACAAATGCTCGAGGCCGTACGCAACAAGACCGGACTTCCAAATTTGAGGG
TGAGAAGCGGCCGTACGAATGTGCTGGGACGAAATTTGACAACCCGCCAG
TAGGAGATCCATGCCTCCGAAAACTGCGTGGAATCGCACACTGGGTATGA
CGAATAAGGCTTGCCCCCTCCGTATTACGGTAATTTTCGTTCAAAAAGAC
CATAAAATTATACTCCGGAGTATAAACCAACCTACACCCTACGACCCACG
ATTTAGAAGACCGATGCTCTATCCCGCCAGTAGGAGATCCATGCCTCCGA
AAACTGCGTGGAATCGCACACTGGGTTGGGGTAAATGCCACAAGCGAGTG
CTCGATGTCGCCGGTATTGCAGCGGTCAAGCTTCCGAATGGTGGACATCA
CACGACCACCAATCTGCGCACAAATCGATTTATTCAAATCTAAATTACTC
GAAATCGTCGGTTTTTTCTGATGTTGACGAAACAGGTTGCCATGGAGCAT
TTCGGCCCGAAAAGTGCACAGTGGTTCAAGAGTACCTTGGGCCCCAGAAG
GGGGCCGATCATGTGGACATTCAACTACGAATTTTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:748772..752408-

>mRNA_P-fluviatile_contig16.2676.1 ID=mRNA_P-fluviatile_contig16.2676.1|Name=mRNA_P-fluviatile_contig16.2676.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1566bp|location=Sequence derived from alignment at P-fluviatile_contig16:748772..752408- (Porterinema fluviatile SAG_2381)
CAGGTGGAAGACTTCGAGATCGACACTGAAATAGACACACAAAAGTTGGA
GATATTTGGGACGATTATCACCGAGGTGAAGATGGAGGGACGTGTCCCGG
CCTCGTCTCACTTGGTATATGACTGTTCGCACGGGGAGTGGCTGCTGGCT
CAAATGGCATACGATCGGAAGATCCGTCTGTTCTCGAGCAGCAGGTGGAA
GACTTCGAGATCGACACTGAAATAGACACACAAAAGTTGGAGATATTTGG
GACGATTATCACCGAGGTGAAGATGGAGGGACGTGTCCCGGCCTCGTCTC
ACTTGGTATATGACTGTTCGCACGGGGAGTGGCTGCTGGCTCAAATGGCA
TACGATCGGAAGATCCGTCTGTTCTCGAGCAGGTCGATTCGACAGCTCGG
GAGTATCTCGTCTTGGTTGCCGGAGAATGCGCGGTCGATTCGACAGCTCG
GGAGTATCTCGTCTTGGTTGCCGGAGAATGCGCGATTTATATTTTCGGGG
GCGCTCGTCCCCAAGCAGATCAAGAGCCTTCTAAAAATGAAAGGCCTAAG
CGCGGTTGTAGCCAGAGATGCGGAGAGTGTGCTTGCGATGGAAGAGGCGA
TGGATGCGATTTATATTTTCGGGGGCGCTCGTCCCCAAGCAGATCAAGAG
CCTTCTAAAAATGAAAGGCCTAAGCGCGGTTGTAGCCAGAGATGCGGAGA
GTGTGCTTGCGATGGAAGAGGCGATGGATGCGGAGCGCAAGCGATTGGCC
GCGAAAGGCCTTTCGAGAATTAGCCAATCTCGGGAAAGATTTTTGCTTGA
GAGAGGGGGGAACGATAAGGGAGCGAACTCGCAGGGACCGGTGGGAAGCC
TGGTCTCTGGGCTCCGTGCGTTTGTCCGAATAGAGGAGGGACATTCAGTC
GACGAGGTGGTCAACATCATCGAAACCATCGGGAAAACGAGCGCAAGCGA
TTGGCCGCGAAAGGCCTTTCGAGAATTAGCCAATCTCGGGAAAGATTTTT
GCTTGAGAGAGGGGGGAACGATAAGGGAGCGAACTCGCAGGGACCGGTGG
GAAGCCTGGTCTCTGGGCTCCGTGCGTTTGTCCGAATAGAGGAGGGACAT
TCAGTCGACGAGGTGGTCAACATCATCGAAACCATCGGGAAAACTTGCAG
AAATATTTCTGTGGTCGGGCTGTGGGCAGGCGACATGGACCATGATGAGT
GTCTACAAATGCTCGAGGCCGTACGCAACAAGACCGGACTTCCAAATTTG
AGGTTGCAGAAATATTTCTGTGGTCGGGCTGTGGGCAGGCGACATGGACC
ATGATGAGTGTCTACAAATGCTCGAGGCCGTACGCAACAAGACCGGACTT
CCAAATTTGAGGGTTGCCATGGAGCATTTCGGCCCGAAAAGTGCACAGTG
GTTCAAGAGTACCTTGGGCCCCAGAAGGGGGCCGATCATGTGGACATTCA
ACTACGAATTTTGAGTTGCCATGGAGCATTTCGGCCCGAAAAGTGCACAG
TGGTTCAAGAGTACCTTGGGCCCCAGAAGGGGGCCGATCATGTGGACATT
CAACTACGAATTTTGA
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