mRNA_P-fluviatile_contig16.2661.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig16.2661.1 vs. uniprot
Match: D7FMX2_ECTSI (Myosin heavy chain, class XI n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX2_ECTSI) HSP 1 Score: 833 bits (2153), Expect = 6.100e-280 Identity = 458/839 (54.59%), Postives = 558/839 (66.51%), Query Frame = 3
Query: 3 EALAEAKEAYVDCVALEYPGAEDLRVEAHVGLARLELVDGDPASIRSALARLSKVLQDHPYSDHIEDVIYLLAIQAAFLSSGNNVANASGALEYLDYLRDSYAPACEGAPTARLYPRWDFAEEEAGESEECGSLVAAALNLRDQGLHVTGLPAWALQFQIGLLAFRLGDSKRGMVTMENAFTSYEIWLPSRSRGDPNDDTPDVDATRKAWFHGVRHWTAWVQHPRTWLDLGDIAYRQGAGCFHMAAEAYRGALKGAGGMFPPDQEEAIAFRIAKCCSRSGQTADAIAGVERLLYTRKFWSEKYRKHLKAWSEAWQKYFEREDAASLRLQCFWRVVVAKMELRFLRAQDRLVLEYTELRRRHLLQHHFRIILEHCRERKRISKCATVIQSMYRVRRAGRIAATMRAVTDNKEAIVKAHVSMLLRKVQVICFNHWVKHNGMARLDKAAAKIQALGRGRKARVMFLATLAARDLRDRQEQQVAQMRDKCVKRRFLQRISRNVAFSRRERAATTIQAVMRGVYGRELASDERNRRARINELLVIVLKRLGAPVFREWYQAAHDIRKERMAIRAQACWRAFRARRKWIKFGWTTNGRLSFCSQVLRAREMGIEAIGRNQQTDKRRVVETWRTIVLERKIVTAQGAARVWLAKRVITQKRRQQEELDRLLKRVMKPVCRRCFVALVRTKNTRRKEKSLSAVAIQCWWRCILAIISAQRVREYDSLLSKAFERVASTNERRLLVRCCQQWRENILKQMGASKIQAAWRGRQARLRAAWLKHRAIRFHAVVKVLRAVYQRRIREYAFEEWSMLMWQRRMMTKLAARFRGSRARTAFAERCSVLKARQ 2519
EALAEA+EAY C LE P E+++V+A VGLARL+ V GDPASIRSALARL+++L+DHPYS HIE+VIY LA+ AAF + + A A+GALEYLDYLRDSYAP+ EGAPTA +YPRWD E+E +SE G + A + +GL V GLPAWALQFQIGLLA RLG+S RGM TMENAFTSYE WLP RSRG ND PDVDA R++W++G+ HWTAWVQHPRTWLDLGDIAYRQG GCFH+AAEAYRGALK AG +FPPDQ+E+IA+RIAKCCSR G A A++G+E LLYT FWSE+YR CA + + R+ D +EAIV AH S L+R QV+C+ HW +H+ M RLDKAAA+IQAL RG KAR + LAAR RD EQ V M DKC+ RR L+R+S+ V RRERAATTIQA+ RGV GRE ASDERNR+ARINELL+ L+RLG PVFREWY+AAH +R+ RM+I+ Q+ WR FRA R ++V RA EMGI AIGRNQ DKRRVVETW+ +VLERK+V QG AR+WLAKRV+++ R +Q+EL RL RV KP+ R+CFVAL R + T RK K + IQCWWRC AI + +R REY + A++ V + +ERRLL RCC++WRENI KQ A+KIQAAWRG + RLRAAW K R +RF +VLRAV ++ +R+ A +EW L W RM TKL+AR+RG RARTAFA + S L+ +Q
Sbjct: 16 EALAEAREAYRRCAELEGPRGENIKVQAQVGLARLDFVVGDPASIRSALARLAEILRDHPYSQHIEEVIYFLAVPAAFPQTKQSTATATGALEYLDYLRDSYAPSREGAPTAMMYPRWDAPEQEVRDSERDGIVPGDAERWQGKGLQVHGLPAWALQFQIGLLASRLGNSTRGMETMENAFTSYEAWLP-RSRGQFNDGAPDVDAIRRSWYNGLPHWTAWVQHPRTWLDLGDIAYRQGVGCFHVAAEAYRGALKRAGNLFPPDQQESIAYRIAKCCSRCGDLAGAVSGIEELLYTHNFWSERYR-----------------------------------------------------------------------------ACARAVIA--------------RSARDFREAIVLAHASKLIRNFQVVCWKHWKQHHDMVRLDKAAAQIQALLRGTKARAVVRFILAARKSRDLLEQLVENMHDKCIARRVLRRLSKQVMVGRRERAATTIQAMARGVVGRETASDERNRQARINELLLNALRRLGTPVFREWYKAAHSLRRARMSIKIQSRWRTFRAMRALTLTK----------TKVSRAHEMGILAIGRNQLADKRRVVETWKHLVLERKVVAVQGMARIWLAKRVMSRGRVRQKELRRLFMRVTKPIRRQCFVALARNRTTCRKNKKALVLVIQCWWRCRHAIGTTRRAREYRKAIHGAYDTVVTNHERRLLTRCCREWRENIPKQKAATKIQAAWRGWEGRLRAAWFKDREVRFEEFAQVLRAVSRQAVRKVAIKEWRTLAWLSRMTTKLSARYRGIRARTAFAAKMSALRRQQ 752
BLAST of mRNA_P-fluviatile_contig16.2661.1 vs. uniprot
Match: A0A6H5KW86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW86_9PHAE) HSP 1 Score: 664 bits (1712), Expect = 1.850e-215 Identity = 402/855 (47.02%), Postives = 493/855 (57.66%), Query Frame = 3
Query: 33 VDCVALEYPGAEDLRVEAHVGLARLELVDGDPASIRSALARLSKVLQDHPYSDHIEDVIYLLAIQAAFLSSGNNVANASGALEYLDYLRDSYAPACEGAPTARLYPRWDFAEEEAGESEECGSLVAAALNLRDQGLHVTGLPAWALQFQIGLLAFRLGDSKRGMVTMENAFTSYEIWLP-------------------SRSRGDPNDDTPDVDATRKAWFHGVRHWTAWVQHPRTWLDLGDIAYRQGAGCFHMAAEAYRGALKGAGGMFPPDQEEAIAFRIAKCCSRSGQTADAIAGVERLLYTRKFWSEKYRKHLKAWSEAWQKYFEREDAASLRLQCFWRVVVAKMELRFLRAQDRLVLEYTELRRRHLLQHHFRIILEHCRERKRISKCATVIQSMYRVRRAGRIAATMRAVTDNKEAIVKAHVSMLLRKVQVICFNHWVKHNGMARLDKAAAKIQALGRGRKARVMFLATLAARDLRDRQ-------EQQVAQMRDKCVKRRFLQRISRNVAFSRRERAATTIQAVMRGVYGRELASDERNRRARINELLVIVLKRLGAPVFREWYQAAHDIRKERMAIRAQACWRAFRARRKWIKFGWTTNGRLSFCSQVLRAREMGIEAIGRNQQTDKRRVVETWRTIVLERKIVTAQGAARVWLAKRVITQKRRQQEELDRLLKRVMKPVCRRCFVALVRTKNTRRKEKSLSAVAIQCWWRCILAIISAQRVREYDSLLSKAFERVASTNERRLLVRCCQQWRENILKQMGASKIQAAWRGRQARLRAAWLKHRAIRFHAVVKVLRAVYQRRIREYAFEEWSMLMWQRRMMTKLAARFRGSRARTAFAERCSVLKARQ 2519
V C LE P E+++V+A VGLARL+ V GDPASIRS LARL++VL+DHPYS HIE+VIY LAI AAF + + A A ALEYLDYLRDSY P+ EGAPTA +YPRWD E+E +SE G + A + + L V GLPAWALQFQ+GLLA RLGDS RGM TMENAFTSYE WLP + SR ND TPDVDA R++W+HG+ HWTAWVQHP +A +E+IAFRIAKCCSR G A AI+G+E LLYTR FWSE+YR CA + + R+ D +EAIV AH S L+R QAL RG KAR + LAAR R Q EQ V M DKC+ RR L+R+S+ V RRERAATT+QA+ RGV GRE+A DERNRRARINELL+ L+RLG PVFREWY+AAH++R+ RM+I+ Q+ WR FRA R ++V RA EMGI AIGRNQ DKR VVETW+ IVLERK+V QG AR+WLAKRV++++R +QEEL RL RV KP+ R+CFVAL R + T RK K + IQCWWRC AI + +R RE+ + + A++ V + +ERRLL+RCC++WRENI KQ A+K+QAAWRG + RLRAAW K R +RF +VLRAV ++ R+ AF+EW L W RM TKLAAR+RG RARTAFA + S L+ +Q
Sbjct: 5 VRCAELEGPRGENIKVQAQVGLARLDFVVGDPASIRSGLARLAEVLRDHPYSQHIEEVIYFLAIPAAFPQTEQSTATAMRALEYLDYLRDSYTPSREGAPTAMMYPRWDTPEQEVCDSERDGMVPGDAERWQGRELQVHGLPAWALQFQMGLLASRLGDSTRGMETMENAFTSYEAWLPRCDRYTADMGSSSLRISLCAWSRVQFNDGTPDVDAVRRSWYHGLPHWTAWVQHPSAVRSSRHLA------------------------------QESIAFRIAKCCSRCGDLAGAISGIEELLYTRNFWSERYR-----------------------------------------------------------------------------ACARAVIA--------------RSARDFQEAIVLAHASKLIRS------------------------FQALLRGTKARAVVRFILAARQSRGDQVYGTDLLEQLVENMHDKCLARRVLRRLSKQVTVGRRERAATTVQAMARGVVGREIACDERNRRARINELLLNALRRLGTPVFREWYKAAHNLRRARMSIKVQSRWRTFRAMRALTLTK----------TKVSRAHEMGILAIGRNQLADKRGVVETWKHIVLERKVVAVQGMARIWLAKRVMSRRRVRQEELRRLFMRVTKPIRRQCFVALARNRTTCRKNKKAMVLVIQCWWRCRHAIGTTRRAREHRNAIHSAYDTVVTNHERRLLIRCCREWRENIPKQKAATKMQAAWRGWEGRLRAAWFKDREVRFEEFAQVLRAVSRQVDRKVAFKEWRTLAWLGRMTTKLAARYRGIRARTAFAAKMSTLRRQQ 704
BLAST of mRNA_P-fluviatile_contig16.2661.1 vs. uniprot
Match: D7FMX3_ECTSI (Similar to NLR family, pyrin domain containing 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMX3_ECTSI) HSP 1 Score: 345 bits (885), Expect = 3.090e-102 Identity = 219/420 (52.14%), Postives = 265/420 (63.10%), Query Frame = 3
Query: 3849 RPAVVICNGDHDAQTGCLGQALSALAV----------LCSSLSVTACGIGNAGAMALAKACPLKDLNELCLEXXXXXXXXXXXXXLALGEGAA---KGLRKIVFSGNRVGGIPAFARALQNVTIRSENLEVLELARCSFTDDDMAVLCEGLADGRCHVRALVLSENVDLGDRGATALAEALRARSEVPNKTNLKALCFHVDLAGCSIHTWGCLALAACVVDISGVEAHERACFPALM----LNLRANRIKDVGVEAMSCATLGQDYNDHRNQQSQVRRRKHPRTKSLRTLNPCGT---------NLTLRRKDYPRVRAVGSSPHVGAHQGDLPPLMGTPLFTAATAAWSFTRKQIPS---------CSVVLDENKASERVVAGQGGLAGMGETALFRGCVLPETVARDKSWTRDAFWANT 5003
RPAVV+CNG++ G G A + LCSSLS TAC +GN GAMA+AKAC +L +LCLE XXXXXXXXXXLALGEGA K LRK+V SGNR+GG+ A ARAL+NV IR LEVLEL+RCS TD D++V+ +GL D RC +R L LS N+DL DRG LAEALR+RSE+ + +L VDL GCS++TWGC ALAA V+DI+ H A++ +NL N IKDVGVEAMSCA+LGQ+Y DH+ +QS RR+KH ++KS L+ NL LR + GDLPPL GTPL+ AATAAW TR P CSVVLD N+ S+RV AGQGGLAG+GE ALFRGCVLPET+ + WTR +FW T
Sbjct: 13 RPAVVLCNGEYSGDVGQTGGGAVAALIDGGVDTMVCSLCSSLSATACSLGNGGAMAIAKACCGGNLEKLCLENCGXXXXXXXXXXLALGEGATAKDKQLRKLVLSGNRIGGVVACARALRNVLIRRP-LEVLELSRCSVTDGDLSVISKGLVDARCRLRVLQLSGNIDLRDRGVNDLAEALRSRSEMYHGACQSSL--QVDLHGCSVNTWGCRALAASVLDINNDGTHHGVGATAVVRLGTVNLGYNSIKDVGVEAMSCASLGQEYEDHKKRQSNARRQKHRQSKSPGVLDAARVHKAHEFGSGNLELRCEPT----------------GDLPPLTGTPLYVAATAAWPDTRHDDPQAKGAPPSTPCSVVLDGNRVSDRVAAGQGGLAGLGEAALFRGCVLPETIVSNTGWTRGSFWTKT 413
BLAST of mRNA_P-fluviatile_contig16.2661.1 vs. uniprot
Match: A0A6H5KL40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL40_9PHAE) HSP 1 Score: 242 bits (617), Expect = 9.950e-67 Identity = 172/413 (41.65%), Postives = 215/413 (52.06%), Query Frame = 3
Query: 3849 RPAVVICNGDHDAQTGCLGQALSALAV----------LCSSLSVTACGIGNAGAMALAKACPLKDLNELCLEXXXXXXXXXXXXXLALGEGAAKGLRKIVFSGNRVGGIPAFARALQNVTIRSENLEVLELARCSFTDDDMAVLCEGLADGRCHVRALVLSENVDLGDRGATALAEALRARSEVPNKTNLKALCFH---VDLAGCSIHTWGCLALAACVVDISGVEAHERACFPALMLNLRANRIKDVGVEAMSCATLGQDYNDHRNQQSQVRRRKHPRTKSLRTLNPCGT---------NLTLRRKDYPRVRAVGSSPHVGAHQGDLPPLMGTPLFTAATAAWSFTR------KQIPSCSVVLDENKASERVVAGQGGLAGMGETALFRGCVLPETVARDKSWTRDAFWANT 5003
RPAVV+CNG + G G A V LCSSLS TAC +GN GAMA+AKAC +L +LCL+ XXXXX LALGE +R S N VL + R DD +++ + GRC + L S G T L++ + + + + L + VDL GCS++TWGC ALAA V+DI+ H A+ +NL N IKDVGVEAMSCA+LGQDY DH+ +QS RR+KH ++KS L+ NL LRR+ GDLPPL GTPL+ AATAAW R K P CSV+LD N+ S+RV AGQGGLAG+GE ALFRGCVLPET+ + WTR +FW T
Sbjct: 13 RPAVVLCNGKYSGDVGQTGGGAVAALVDGGVDAMVCSLCSSLSATACSLGNGGAMAIAKACCGGNLEKLCLDNCGIXXXXXTALALALGE-----VRNAQASAN-----------------------VLMIPRAGTGDDRISLKGRSVFGGRCVILLLEKSRFFCRAI-GETELSDNILSVKKSCWAVFILTLTTYTRKVDLHGCSVNTWGCRALAASVLDINNEGTHYGVGATAVTVNLGYNSIKDVGVEAMSCASLGQDYEDHKKRQSNARRQKHHQSKSPGVLDAARVHEAHEFGSGNLELRREPT----------------GDLPPLTGTPLYAAATAAWPDKRHEDPRAKGAPPCSVLLDGNRVSDRVAAGQGGLAGLGEAALFRGCVLPETIVSNTGWTRGSFWTKT 380 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2661.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig16.2661.1 >prot_P-fluviatile_contig16.2661.1 ID=prot_P-fluviatile_contig16.2661.1|Name=mRNA_P-fluviatile_contig16.2661.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=1497bp MVTMENAFTSYEIWLPSRSRGDPNDDTPDVDATRKAWFHGVRHWTAWVQHback to top mRNA from alignment at P-fluviatile_contig16:552171..567429+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig16.2661.1 ID=mRNA_P-fluviatile_contig16.2661.1|Name=mRNA_P-fluviatile_contig16.2661.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=15259bp|location=Sequence derived from alignment at P-fluviatile_contig16:552171..567429+ (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig16:552171..567429+ >mRNA_P-fluviatile_contig16.2661.1 ID=mRNA_P-fluviatile_contig16.2661.1|Name=mRNA_P-fluviatile_contig16.2661.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=8982bp|location=Sequence derived from alignment at P-fluviatile_contig16:552171..567429+ (Porterinema fluviatile SAG_2381)back to top |