mRNA_P-fluviatile_contig16.2660.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2660.1
Unique NamemRNA_P-fluviatile_contig16.2660.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:547150..549302 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_002650.1
Exons3
Model size1461
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2660.1prot_P-fluviatile_contig16.2660.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 547790..548907 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.0332205-UTR-P-fluviatile_contig16:547149..5477891622815686.0332205-UTR-P-fluviatile_contig16:547149..547789Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 547150..547789 -
1693562934.3158638-UTR-P-fluviatile_contig16:547149..5477891693562934.3158638-UTR-P-fluviatile_contig16:547149..547789Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 547150..547789 -
1622815686.084179-UTR-P-fluviatile_contig16:548907..5493021622815686.084179-UTR-P-fluviatile_contig16:548907..549302Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 548908..549302 -
1693562934.7299278-UTR-P-fluviatile_contig16:548907..5493021693562934.7299278-UTR-P-fluviatile_contig16:548907..549302Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 548908..549302 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815686.0440707-CDS-P-fluviatile_contig16:547789..5479361622815686.0440707-CDS-P-fluviatile_contig16:547789..547936Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 547790..547936 -
1693562934.3260722-CDS-P-fluviatile_contig16:547789..5479361693562934.3260722-CDS-P-fluviatile_contig16:547789..547936Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 547790..547936 -
1622815686.0562596-CDS-P-fluviatile_contig16:548196..5483231622815686.0562596-CDS-P-fluviatile_contig16:548196..548323Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 548197..548323 -
1693562934.703544-CDS-P-fluviatile_contig16:548196..5483231693562934.703544-CDS-P-fluviatile_contig16:548196..548323Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 548197..548323 -
1622815686.0699894-CDS-P-fluviatile_contig16:548755..5489071622815686.0699894-CDS-P-fluviatile_contig16:548755..548907Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 548756..548907 -
1693562934.7222314-CDS-P-fluviatile_contig16:548755..5489071693562934.7222314-CDS-P-fluviatile_contig16:548755..548907Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 548756..548907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2660.1

>prot_P-fluviatile_contig16.2660.1 ID=prot_P-fluviatile_contig16.2660.1|Name=mRNA_P-fluviatile_contig16.2660.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=142bp
MQRKSGRCSPSSRNCMNSRQAWSFSALDQEVSRGPVDFRRDWTDEDELQP
RYLSQESFVAVMKNSMPFLAFMDSFNMAGEPVFSDDDHRVTFPIRVVVDE
TETAMNWAEMDFRLSKVRDGSYKGCWLMESATITDSGYEKK*
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mRNA from alignment at P-fluviatile_contig16:547150..549302-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2660.1 ID=mRNA_P-fluviatile_contig16.2660.1|Name=mRNA_P-fluviatile_contig16.2660.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2153bp|location=Sequence derived from alignment at P-fluviatile_contig16:547150..549302- (Porterinema fluviatile SAG_2381)
TCCCTCCGCACACTGTCCTCGAACACGTCCTGAGCTCTCTTCAAAACCTC
GACTTCCCAACAGAGGATGCGGGGTGGGAGAAGGTGAGCAGTGGTGCAGG
AACTCCCTCCTCATCTCCGTTTCCTCTCTCAACGTGGGAAGTGCAGCTAT
GGTCAATAATGATGTTCTTGTGTCCAGAGACCGGCTTTCAGCGACGTTCG
GGAACAAAGAGCTCCTCAATACGTGTTTTTTTCAAGGCAGCAGTTCTGCA
GTAATTTGCGCGCCGGGTTTGACTATGTTCCACTCAGAGCAACGTGGATG
GTAATTATCGTGCATTTCAAACTCAATGTTTGAGTCTATCCTCGGCATTT
CGGACTTCAAGAGGTAGCCCGCAGCGATTGTTGGTTGGTGGAATCATGCA
ACGCAAAAGTGGTCGTTGCAGCCCGTCGTCTCGAAATTGCATGAACTCTC
GACAGGCCTGGTCATTCAGCGCTCTCGACCAAGAGGTCAGCCGAGGGCCC
GTTGATTTCCGTCGCGATTGGACGGACGAAGACGAACTGCAACCCAGGTA
AACAGTCGCGCCATCGCCCATGAGGTATTGCTCCCTGACTCGGCGCTTCT
CGCTTGCCTTTCGGTCACCTTCGAATGGCATGTGCTTCATTTTCGGATGC
CCTTTGAAGGTTTACGTTTGGCTTCACTGCACATAGAGTCAGCCGGCAAG
AGATCGTTCTCCATCAGCATTTAGAATCATCAAGAAATGCCCTCCTGGCC
CCGGGAGGCACTCCTTGATCCGTCACGGCCGCGTGTAGCACATGATGGTC
AAACAGTTGCTTTGCAGCCCACATACTGTTGGACTTTCCCGGCCAAATCA
AGGGGATAACATGCGCCGCTTGACCTGAAGAGTTAGTCGGTGGAGATTTT
CGCTTGTGCTGCCTATTCGCGATATAAGTTGGAGCCCATTTTGGACAACC
TGCGCGCTGTCATGACGGTCGGCCTTCAGGTATCTGTCTCAGGAATCGTT
CGTCGCCGTCATGAAAAATTCGATGCCATTCCTCGCTTTCATGGACTCCT
TCAACATGGCTGGAGAGCCAGTTTTCTCTGATGATGACCATCGTGTGACA
TTCCCGGTGAGTGTTGCTCCGGCAAAATTCGATAAAAGAAGAGAATGTGA
TATCGTTAGGAAAGTCCCAGTGGTGGCTGAAAAATATCCTTTTTGAAGGA
TGATGCAATAGGGGGGAATTCTCGGCGGTAGCTGTAAAAACAATCTTTTG
AAACACTCGTTCCGCAGGATTCAGTAGGGGGCCTCTGAAACAAGTGCGGG
TGTAACCGCTCAATCAGAAAGCGAAACCTCAATCTACTTCACCTACACCT
GCTTGCTGCTGCACAGATACGCGTGGTAGTCGATGAGACGGAGACCGCGA
TGAACTGGGCAGAAATGGACTTCCGATTATCTAAAGTTAGGGATGGCAGT
TACAAGGGGTGTTGGCTCATGGAGAGCGCCACCATCACGGATTCTGGGTA
CGAAAAGAAATGATTTTGTTGGGATTTTTTCGGCCAGCACCACGAACGTT
CTTGATCCTCGTGGTTGTAGAGAAATGTACATCGAAATTGTCGACGATTC
GATTTTGTACATGAGATTTAATTATTGAAAAAACGGGGGGCAAACGCAAG
AAGATTGGCTCTGTTGTTCGCGTTTGTTCGCTTCTCGTAGACATTAAAGA
TTCGCGCAGCCATCTGTGTTTTGTGTCATTGAACCTTTAACGAACGTCCC
TGATTCATGCTTCGCACACGATGAGCTTGGTAAAACCTTGGAATTCCAAG
GCCATATTTCAGCGGAAACACGTTTGGAAGGAACCACGGTCGACGAGGGC
AGCCTTCACGATAACGTGAAGACGTTCCCTCGGACAGCGTACAGCGGCCG
GTGCGTGGGCGATAAGTGTCGCTGTGGTGGGGGGAGTTGAGGATTCTTAT
GTATTTCGTCAGCTCCGGAGATCCACAAATTCCATGGAGCTGCGGTAGAG
TGAGCGCTTAGATCCATCAAAACTACTGAAAGAAGCGGACTAGACGTTAC
GCGTGATATAAGCTCTCCGTCTATCGTTTAGATCGCACTCTCTCTTCGCT
GCTCTTGCGTAAAAACTTGTTCGCCGAGTGGCCAGCATCCAAGGTCTCCT
AAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:547150..549302-

>mRNA_P-fluviatile_contig16.2660.1 ID=mRNA_P-fluviatile_contig16.2660.1|Name=mRNA_P-fluviatile_contig16.2660.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=852bp|location=Sequence derived from alignment at P-fluviatile_contig16:547150..549302- (Porterinema fluviatile SAG_2381)
ATGCAACGCAAAAGTGGTCGTTGCAGCCCGTCGTCTCGAAATTGCATGAA
CTCTCGACAGGCCTGGTCATTCAGCGCTCTCGACCAAGAGGTCAGCCGAG
GGCCCGTTGATTTCCGTCGCGATTGGACGGACGAAGACGAACTGCAACCC
AGATGCAACGCAAAAGTGGTCGTTGCAGCCCGTCGTCTCGAAATTGCATG
AACTCTCGACAGGCCTGGTCATTCAGCGCTCTCGACCAAGAGGTCAGCCG
AGGGCCCGTTGATTTCCGTCGCGATTGGACGGACGAAGACGAACTGCAAC
CCAGGTATCTGTCTCAGGAATCGTTCGTCGCCGTCATGAAAAATTCGATG
CCATTCCTCGCTTTCATGGACTCCTTCAACATGGCTGGAGAGCCAGTTTT
CTCTGATGATGACCATCGTGTGACATTCCCGGTATCTGTCTCAGGAATCG
TTCGTCGCCGTCATGAAAAATTCGATGCCATTCCTCGCTTTCATGGACTC
CTTCAACATGGCTGGAGAGCCAGTTTTCTCTGATGATGACCATCGTGTGA
CATTCCCGATACGCGTGGTAGTCGATGAGACGGAGACCGCGATGAACTGG
GCAGAAATGGACTTCCGATTATCTAAAGTTAGGGATGGCAGTTACAAGGG
GTGTTGGCTCATGGAGAGCGCCACCATCACGGATTCTGGGTACGAAAAGA
AATGAATACGCGTGGTAGTCGATGAGACGGAGACCGCGATGAACTGGGCA
GAAATGGACTTCCGATTATCTAAAGTTAGGGATGGCAGTTACAAGGGGTG
TTGGCTCATGGAGAGCGCCACCATCACGGATTCTGGGTACGAAAAGAAAT
GA
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