mRNA_P-fluviatile_contig16.2648.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2648.1
Unique NamemRNA_P-fluviatile_contig16.2648.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:392616..393256 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size642
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.8112893-UTR-P-fluviatile_contig16:392615..3928061622815678.8112893-UTR-P-fluviatile_contig16:392615..392806Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 392616..392806 +
1693562884.207743-UTR-P-fluviatile_contig16:392615..3928061693562884.207743-UTR-P-fluviatile_contig16:392615..392806Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 392616..392806 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815678.8228042-CDS-P-fluviatile_contig16:392806..3932561622815678.8228042-CDS-P-fluviatile_contig16:392806..393256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 392807..393256 +
1693562884.2170238-CDS-P-fluviatile_contig16:392806..3932561693562884.2170238-CDS-P-fluviatile_contig16:392806..393256Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 392807..393256 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2648.1prot_P-fluviatile_contig16.2648.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 392807..393256 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2648.1

>prot_P-fluviatile_contig16.2648.1 ID=prot_P-fluviatile_contig16.2648.1|Name=mRNA_P-fluviatile_contig16.2648.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=150bp
MAIGQRWRWQERSRRNLTPAECEGGSSKNAVNAVIRVNPRLLEEGGYKDI
ADRDARSREGGYAEEKRRAANRVFFGTFSPGPHSALPSSCLSWRTQGRCS
WYLFVLAEREDGGRLGSCNLLRRSRRNRQERKILRSLLGCTPSHFLVENC
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mRNA from alignment at P-fluviatile_contig16:392616..393256+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2648.1 ID=mRNA_P-fluviatile_contig16.2648.1|Name=mRNA_P-fluviatile_contig16.2648.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=641bp|location=Sequence derived from alignment at P-fluviatile_contig16:392616..393256+ (Porterinema fluviatile SAG_2381)
GGTGGGGACCGGTAGATCGCTCTGGATGCCCTGTTAAGAATCTGAACAAA
GCAGTTGTCTACTGTGCGGAAATCCACGTGCTAAAGAAGAGTGTGTACTG
GCGCTGTACTTGAGACGCAACTGTGAGACGTGCACCCGAGCCCCATTTCA
GATGCTGATGCTACTGGCGTCAGAAGGTTGACGAAAAATCGATGGCAATC
GGACAGAGGTGGCGTTGGCAAGAGCGTTCACGAAGAAATCTCACACCAGC
AGAATGCGAAGGCGGATCTTCAAAGAACGCGGTCAACGCGGTGATACGGG
TAAATCCACGTTTGTTAGAGGAAGGTGGCTACAAGGACATCGCCGACCGA
GACGCTCGCAGCCGGGAGGGGGGATACGCAGAGGAAAAGCGGAGGGCGGC
AAACAGGGTCTTTTTTGGAACGTTTTCTCCGGGCCCGCACTCCGCTCTTC
CTTCGAGCTGTTTGTCGTGGCGTACGCAAGGAAGGTGTTCTTGGTATCTT
TTCGTCTTGGCGGAAAGGGAAGACGGTGGACGCCTCGGTTCATGCAATCT
CTTGCGTCGAAGTCGCCGAAATCGCCAGGAGCGGAAGATACTCAGGTCTT
TGCTCGGCTGTACCCCGTCGCATTTTCTCGTCGAAAACTGC
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:392616..393256+

>mRNA_P-fluviatile_contig16.2648.1 ID=mRNA_P-fluviatile_contig16.2648.1|Name=mRNA_P-fluviatile_contig16.2648.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=900bp|location=Sequence derived from alignment at P-fluviatile_contig16:392616..393256+ (Porterinema fluviatile SAG_2381)
ATGGCAATCGGACAGAGGTGGCGTTGGCAAGAGCGTTCACGAAGAAATCT
CACACCAGCAGAATGCGAAGGCGGATCTTCAAAGAACGCGGTCAACGCGG
TGATACGGGTAAATCCACGTTTGTTAGAGGAAGGTGGCTACAAGGACATC
GCCGACCGAGACGCTCGCAGCCGGGAGGGGGGATACGCAGAGGAAAAGCG
GAGGGCGGCAAACAGGGTCTTTTTTGGAACGTTTTCTCCGGGCCCGCACT
CCGCTCTTCCTTCGAGCTGTTTGTCGTGGCGTACGCAAGGAAGGTGTTCT
TGGTATCTTTTCGTCTTGGCGGAAAGGGAAGACGGTGGACGCCTCGGTTC
ATGCAATCTCTTGCGTCGAAGTCGCCGAAATCGCCAGGAGCGGAAGATAC
TCAGGTCTTTGCTCGGCTGTACCCCGTCGCATTTTCTCGTCGAAAACTGC
ATGGCAATCGGACAGAGGTGGCGTTGGCAAGAGCGTTCACGAAGAAATCT
CACACCAGCAGAATGCGAAGGCGGATCTTCAAAGAACGCGGTCAACGCGG
TGATACGGGTAAATCCACGTTTGTTAGAGGAAGGTGGCTACAAGGACATC
GCCGACCGAGACGCTCGCAGCCGGGAGGGGGGATACGCAGAGGAAAAGCG
GAGGGCGGCAAACAGGGTCTTTTTTGGAACGTTTTCTCCGGGCCCGCACT
CCGCTCTTCCTTCGAGCTGTTTGTCGTGGCGTACGCAAGGAAGGTGTTCT
TGGTATCTTTTCGTCTTGGCGGAAAGGGAAGACGGTGGACGCCTCGGTTC
ATGCAATCTCTTGCGTCGAAGTCGCCGAAATCGCCAGGAGCGGAAGATAC
TCAGGTCTTTGCTCGGCTGTACCCCGTCGCATTTTCTCGTCGAAAACTGC
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