mRNA_P-fluviatile_contig16.2644.1 (mRNA) Porterinema fluviatile SAG_2381
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Overview
Homology
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A6H5L203_9PHAE (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L203_9PHAE) HSP 1 Score: 204 bits (520), Expect = 1.320e-60 Identity = 97/110 (88.18%), Postives = 103/110 (93.64%), Query Frame = 2
Query: 248 MEGTATRFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQFGKRVFPSPPPSS 577
MEG+ TRFEMELELMNCLASPEYLHYLAQSGYLDDRAF+RFLEYLQYFKRP+YA+FITYPHSLAMLDLLINNP FRKEIAHVSFRDFVHQQQFLHWQFGK P PP++
Sbjct: 1 MEGSGTRFEMELELMNCLASPEYLHYLAQSGYLDDRAFVRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRKEIAHVSFRDFVHQQQFLHWQFGKTAAPPRPPAA 110
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: D7FV80_ECTSI (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV80_ECTSI) HSP 1 Score: 147 bits (372), Expect = 4.390e-39 Identity = 70/77 (90.91%), Postives = 74/77 (96.10%), Query Frame = 2
Query: 248 MEGTATRFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRK 478
MEG+ TRFEMELELMNCLASPEYLHYLAQ GYLDDRAF+RFLEYLQYFKRP+YA+FITYPHSLAMLDLLINNP FRK
Sbjct: 1 MEGSGTRFEMELELMNCLASPEYLHYLAQGGYLDDRAFIRFLEYLQYFKRPEYAKFITYPHSLAMLDLLINNPPFRK 77
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A835Z5G5_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5G5_9STRA) HSP 1 Score: 137 bits (345), Expect = 7.100e-35 Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 2
Query: 212 PRALPQAGACHSMEGTATRFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQFGKR 550
P A P A + A RFE+ELE + CLASPEYLH+LAQ Y DD AF+ FL+YL Y++RPQYA+++ YPH LAMLD L+N+ FR E+ SFRDFVHQQQF HWQ +R
Sbjct: 9 PPAPPTTAAAEDVG--AQRFEVELEFVQCLASPEYLHFLAQQRYFDDPAFMAFLQYLTYWRRPQYAKYLMYPHCLAMLDALLNSKRFRSELLMESFRDFVHQQQFFHWQHKRR 119
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A6U6IBL1_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6IBL1_9STRA) HSP 1 Score: 132 bits (333), Expect = 6.230e-33 Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 2
Query: 266 RFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQFGKR 550
RFE+ELE + CLASP YLH+LA SG L D +FL FLEYL+Y+ RP+YARFITYPH L LDLL N FR+E+A+V+FR+FVH+QQF WQF R
Sbjct: 33 RFELELEFVQCLASPAYLHHLATSGLLSDSSFLSFLEYLRYWSRPEYARFITYPHCLYFLDLLTTNETFRREMANVAFRNFVHEQQFYSWQFRSR 127
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A7S3XZ41_HETAK (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XZ41_HETAK) HSP 1 Score: 129 bits (324), Expect = 1.530e-31 Identity = 58/97 (59.79%), Postives = 78/97 (80.41%), Query Frame = 2
Query: 248 MEGTATRFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQ 538
++G +RFE+ELE + CL+SPEYLHYLAQ+ Y +D AF+ FL YLQY++RP+YA+FI YPH LA +++L + AFRKE+A F++FVHQQQF HWQ
Sbjct: 40 LDGGHSRFEVELEFVQCLSSPEYLHYLAQNKYFEDPAFINFLHYLQYWRRPEYAKFIIYPHCLAFMEML-EDEAFRKELAKPGFKEFVHQQQFFHWQ 135
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A7S2XM67_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM67_9STRA) HSP 1 Score: 120 bits (302), Expect = 1.320e-28 Identity = 63/136 (46.32%), Postives = 88/136 (64.71%), Query Frame = 2
Query: 200 ASGHPRALPQAGACHSMEGTATRFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQF-GKRVFPSPPPSSQPLSDYTPP 604
A GH P + + RFE+ELE + LASP Y+H+LA SG L +F+ FL YLQY+KRP+YA++I+YPH LDLLI+N FR+E+A+V FR+FVH+QQF WQ+ R++ + ++ SD T P
Sbjct: 7 AIGHEDGEPAVSSSED-DLPKNRFELELEFLQSLASPAYVHHLATSGILQSPSFIAFLRYLQYWKRPEYAKYISYPHCFFFLDLLIHNEPFRREMANVGFRNFVHEQQFYSWQYRSARLYGNGLATTPETSDTTEP 141
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A7S2EVA4_TRICV (Mediator of RNA polymerase II transcription subunit 31 (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EVA4_TRICV) HSP 1 Score: 119 bits (298), Expect = 4.670e-28 Identity = 54/91 (59.34%), Postives = 70/91 (76.92%), Query Frame = 2
Query: 266 RFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQ 538
RFE+ELE + CLASP Y+H+LA SG L D +FL FL YL+Y+ P+YARF+ YPH L LDLL + FR+E+A+V+FR+FVH+QQF WQ
Sbjct: 39 RFELELEFVQCLASPAYMHHLATSGLLSDPSFLSFLRYLRYWSHPEYARFLVYPHCLYFLDLLCESEGFRREMANVAFRNFVHEQQFYGWQ 129
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A7S3QJ33_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QJ33_9STRA) HSP 1 Score: 121 bits (303), Expect = 6.300e-28 Identity = 57/97 (58.76%), Postives = 73/97 (75.26%), Query Frame = 2
Query: 266 RFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQ-YFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQFGKRV 553
RFE+ELE + LASP YLH+LA GY D AFL +L YL+ Y+ RP+YA++ITYPH L LDL I AFRKEI+ V FR+FVH+QQF++WQ+ R+
Sbjct: 77 RFELELEFVQSLASPAYLHHLATQGYFQDEAFLTYLRYLRSYWTRPEYAKYITYPHCLFFLDLAIEKEAFRKEISQVGFRNFVHEQQFMNWQYRSRM 173
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A2P6TGR1_CHLSO (Mediator of RNA polymerase II transcription subunit 31 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGR1_CHLSO) HSP 1 Score: 113 bits (282), Expect = 6.930e-26 Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 2
Query: 215 RALPQAGACHSMEGTATRFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQFGK 547
RA + C M RFE+ELE ++CLA+P YL++LAQ+ Y +D AFL +L+YL Y+++PQYARFI YPH+L LDLL P FR +IA+ ++++ VH QQF WQ+ +
Sbjct: 9 RADEEEVGCSGMR----RFELELEFLHCLANPGYLNWLAQNRYFEDEAFLEYLKYLLYWRQPQYARFIVYPHALYFLDLL-QTPEFRAKIANPAYKEMVHTQQFFFWQYAR 114
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Match: A0A6V2LYR4_9STRA (Mediator of RNA polymerase II transcription subunit 31 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LYR4_9STRA) HSP 1 Score: 113 bits (282), Expect = 2.380e-25 Identity = 51/92 (55.43%), Postives = 66/92 (71.74%), Query Frame = 2
Query: 266 RFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRPQYARFITYPHSLAMLDLLINNPAFRKEIAHVSFRDFVHQQQFLHWQF 541
RFE+ELE + CLASP YLH+LA+S L +FL + Y+KRP+Y RFI YPH L LDL++ N FR+E+ +V FR+FVH+QQF WQF
Sbjct: 50 RFELELEFIQCLASPAYLHHLAESNVLSSPSFLSYXXXXXYWKRPEYVRFIIYPHCLYFLDLILENETFRREMGNVGFRNFVHEQQFYSWQF 141 The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-fluviatile_contig16.2644.1 >prot_P-fluviatile_contig16.2644.1 ID=prot_P-fluviatile_contig16.2644.1|Name=mRNA_P-fluviatile_contig16.2644.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=127bp MEGTATRFEMELELMNCLASPEYLHYLAQSGYLDDRAFLRFLEYLQYFKRback to top mRNA from alignment at P-fluviatile_contig16:316312..319370- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-fluviatile_contig16.2644.1 ID=mRNA_P-fluviatile_contig16.2644.1|Name=mRNA_P-fluviatile_contig16.2644.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3059bp|location=Sequence derived from alignment at P-fluviatile_contig16:316312..319370- (Porterinema fluviatile SAG_2381)back to top Coding sequence (CDS) from alignment at P-fluviatile_contig16:316312..319370- >mRNA_P-fluviatile_contig16.2644.1 ID=mRNA_P-fluviatile_contig16.2644.1|Name=mRNA_P-fluviatile_contig16.2644.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=762bp|location=Sequence derived from alignment at P-fluviatile_contig16:316312..319370- (Porterinema fluviatile SAG_2381)back to top |