mRNA_P-fluviatile_contig16.2641.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2641.1
Unique NamemRNA_P-fluviatile_contig16.2641.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2641.1 vs. uniprot
Match: A0A6H5JCW3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCW3_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.570e-60
Identity = 114/162 (70.37%), Postives = 125/162 (77.16%), Query Frame = 1 
Query:    1 LKEVPDEVIRKVEQRYLASHERLAASYPLDHAGVQRAKSEQMESVRRLKETGMREFDLPIHWLPEDYDGAECGAGNGRDIEEEDGSGDPGGRGGGDETDASDSDAEEADFFRRGRSRAIGSRGKDRDVVSVKKGSLAFFVARGAPFLIGRIIAERVDRDGNR 486
            LKEV DE+IRKVEQRYLASHE LAA+YPL   G QRAK+EQM+SVRRLKETG+REFDLP+HWLP+DY GAE G  NG DIEEEDGSG PG R               AD FRRGRSRAIG    DRDVVS+++GS AFFVARGAPFL+GRI AE VDRDG R
Sbjct:  186 LKEVSDEIIRKVEQRYLASHESLAATYPL---GAQRAKNEQMDSVRRLKETGLREFDLPVHWLPDDYGGAEAGVRNGNDIEEEDGSGGPGDRXXXXXXXXXXXXXXXADCFRRGRSRAIGRSANDRDVVSIEEGSFAFFVARGAPFLVGRIAAESVDRDGTR 344
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BLAST of mRNA_P-fluviatile_contig16.2641.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.630e-37
Identity = 95/173 (54.91%), Postives = 119/173 (68.79%), Query Frame = 1 
Query:    1 LKEVPDEVIRKVEQRYLASHERLAASYPLDHAGVQRAKSEQMESVRRLKETGMREFDLPIHWLP--------EDYDGAECGAGNGRDIEEE-DGSGDPGGRGGGDETDASDSDAE-EADFFRRGRSRAIGSRGKDRDV-VSVKKGSLAFFVARGAPFLIGRIIAERVDRDGNR 486
            LK VP++VI+KVEQRYLASHERLAA++PLD   VQRAK EQ +SVR L++TG REFDLP+HWLP        E+  G + G  N  D E++ +GSG     G  DE D + SD++ E +F RRGR RA G    DR   +SV+ GS AFFVAR APFL+GRI+AER+  +G R
Sbjct:  389 LKRVPEDVIQKVEQRYLASHERLAAAFPLDDGAVQRAKDEQKQSVRLLRQTGEREFDLPVHWLPVYDSGSGDEENVGPDTGDNN--DAEQDFNGSGGHDHDGIDDEADDTSSDSDMEPEFRRRGRPRATGRPTTDRSPPISVQVGSFAFFVARRAPFLVGRIVAERLGEEGER 559
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BLAST of mRNA_P-fluviatile_contig16.2641.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.360e-6
Identity = 55/167 (32.93%), Postives = 83/167 (49.70%), Query Frame = 1 
Query:    1 LKEVPDEVIRKVEQRYLASHERLAASYPLDHAGVQRAKSEQMESVRRLKETGMREFDLPIHWLPEDYDGAECGAGNGRDIEEEDGSGDPGGRGGGDETDASDSDAEEA--DFF-------RRGRSRAIGSRGKDRDVVSVKKGSL---AFFVARGAPFLIGRIIAER 465
            LK V D+VI +V+ R  AS E+L  +Y  D    +R K +  +S+R L+ TG + FDL   WLP           +G D E + G G   G GGG     SD D   +  D+        ++  S   G   + RD  +   G++   +FF++ GAPFL+G++I +R
Sbjct:  386 LKLVQDDVIHRVDMRQQASWEKLPVAYVGDPEKQKRVKLDHADSLRILRTTGTKAFDLDTSWLPLQV--------SGDDSESDPGDG---GDGGGLSHGLSDDDDNSSFGDYLDERLRQHQQSGSAPQGGGRRLRDQQTWAHGTMNTFSFFLSDGAPFLVGKVIDKR 541
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2641.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JCW3_9PHAE6.570e-6070.37Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE1.630e-3754.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL03_9PHAE3.360e-632.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:280951..281637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size488
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815676.4476311-CDS-P-fluviatile_contig16:280950..2810381622815676.4476311-CDS-P-fluviatile_contig16:280950..281038Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 280951..281038 +
1693562881.1227093-CDS-P-fluviatile_contig16:280950..2810381693562881.1227093-CDS-P-fluviatile_contig16:280950..281038Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 280951..281038 +
1622815676.463403-CDS-P-fluviatile_contig16:281238..2816361622815676.463403-CDS-P-fluviatile_contig16:281238..281636Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 281239..281636 +
1693562881.1317227-CDS-P-fluviatile_contig16:281238..2816361693562881.1317227-CDS-P-fluviatile_contig16:281238..281636Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 281239..281636 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2641.1prot_P-fluviatile_contig16.2641.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 280951..281636 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2641.1

>prot_P-fluviatile_contig16.2641.1 ID=prot_P-fluviatile_contig16.2641.1|Name=mRNA_P-fluviatile_contig16.2641.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=162bp
LKEVPDEVIRKVEQRYLASHERLAASYPLDHAGVQRAKSEQMESVRRLKE
TGMREFDLPIHWLPEDYDGAECGAGNGRDIEEEDGSGDPGGRGGGDETDA
SDSDAEEADFFRRGRSRAIGSRGKDRDVVSVKKGSLAFFVARGAPFLIGR
IIAERVDRDGNR
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mRNA from alignment at P-fluviatile_contig16:280951..281637+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2641.1 ID=mRNA_P-fluviatile_contig16.2641.1|Name=mRNA_P-fluviatile_contig16.2641.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=687bp|location=Sequence derived from alignment at P-fluviatile_contig16:280951..281637+ (Porterinema fluviatile SAG_2381)
CTCAAGGAAGTGCCTGATGAGGTTATCCGCAAGGTGGAGCAGCGTTACCT
TGCATCGCATGAACGCCTGGCTGCGTCGTACCCACTAGGTGAGTCCATCA
CGTCGTGCGGGGTTCAACTGTTTATACGTGGGTGGTGGGCGATGAGTATC
GTTAGGTTGAAACTCCGTGCAAGGCGTCAACTTGAGGCAGACAAAGATGG
AAGTTTTGAAGTATGCCTTACATGGCCCCTCGATCTCTCTCTGTTGTCAA
TGCTCTACGCGCATGCCCCTATCCATCGATCTTCCCAGACCACGCAGGCG
TGCAAAGAGCAAAGAGCGAACAGATGGAGTCCGTGCGGCGTCTCAAGGAG
ACGGGGATGCGAGAGTTCGACCTCCCAATTCACTGGCTTCCCGAAGACTA
CGACGGAGCGGAATGTGGTGCCGGCAACGGTAGAGACATCGAAGAGGAAG
ACGGTTCGGGGGATCCCGGTGGTCGTGGTGGGGGCGACGAAACGGATGCG
TCAGACAGTGACGCGGAGGAAGCTGACTTCTTTCGAAGGGGTCGTTCTCG
TGCTATCGGAAGTAGGGGCAAAGATCGGGACGTCGTAAGTGTCAAGAAGG
GCAGCTTAGCCTTCTTCGTGGCGAGGGGGGCTCCGTTCTTGATTGGTAGG
ATAATTGCGGAGAGAGTTGACCGTGACGGAAACCGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:280951..281637+

>mRNA_P-fluviatile_contig16.2641.1 ID=mRNA_P-fluviatile_contig16.2641.1|Name=mRNA_P-fluviatile_contig16.2641.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=972bp|location=Sequence derived from alignment at P-fluviatile_contig16:280951..281637+ (Porterinema fluviatile SAG_2381)
CTCAAGGAAGTGCCTGATGAGGTTATCCGCAAGGTGGAGCAGCGTTACCT
TGCATCGCATGAACGCCTGGCTGCGTCGTACCCACTAGCTCAAGGAAGTG
CCTGATGAGGTTATCCGCAAGGTGGAGCAGCGTTACCTTGCATCGCATGA
ACGCCTGGCTGCGTCGTACCCACTAGACCACGCAGGCGTGCAAAGAGCAA
AGAGCGAACAGATGGAGTCCGTGCGGCGTCTCAAGGAGACGGGGATGCGA
GAGTTCGACCTCCCAATTCACTGGCTTCCCGAAGACTACGACGGAGCGGA
ATGTGGTGCCGGCAACGGTAGAGACATCGAAGAGGAAGACGGTTCGGGGG
ATCCCGGTGGTCGTGGTGGGGGCGACGAAACGGATGCGTCAGACAGTGAC
GCGGAGGAAGCTGACTTCTTTCGAAGGGGTCGTTCTCGTGCTATCGGAAG
TAGGGGCAAAGATCGGGACGTCGTAAGTGTCAAGAAGGGCAGCTTAGCCT
TCTTCGTGGCGAGGGGGGCTCCGTTCTTGATTGGTAGGATAATTGCGGAG
AGAGTTGACCGTGACGGAAACCGGACCACGCAGGCGTGCAAAGAGCAAAG
AGCGAACAGATGGAGTCCGTGCGGCGTCTCAAGGAGACGGGGATGCGAGA
GTTCGACCTCCCAATTCACTGGCTTCCCGAAGACTACGACGGAGCGGAAT
GTGGTGCCGGCAACGGTAGAGACATCGAAGAGGAAGACGGTTCGGGGGAT
CCCGGTGGTCGTGGTGGGGGCGACGAAACGGATGCGTCAGACAGTGACGC
GGAGGAAGCTGACTTCTTTCGAAGGGGTCGTTCTCGTGCTATCGGAAGTA
GGGGCAAAGATCGGGACGTCGTAAGTGTCAAGAAGGGCAGCTTAGCCTTC
TTCGTGGCGAGGGGGGCTCCGTTCTTGATTGGTAGGATAATTGCGGAGAG
AGTTGACCGTGACGGAAACCGG
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