mRNA_P-fluviatile_contig16.2634.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2634.1
Unique NamemRNA_P-fluviatile_contig16.2634.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2634.1 vs. uniprot
Match: D7FU85_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU85_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 8.350e-37
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 2 
Query:   35 MVAARLYKALIGLPITEQQKVFLGVTTICAICAVPVLRPNRPKPGHGLFDSEKPQEVQLAQEEARRKNLNIGDRT 259
            MVA RLY+AL GLP+TEQQKVF+GVTTICAICA+PVLRPNRPKPGHGLFDSEKPQ V+LAQEEARRK LN+GDRT
Sbjct:    1 MVATRLYRALAGLPLTEQQKVFVGVTTICAICAIPVLRPNRPKPGHGLFDSEKPQAVELAQEEARRKKLNVGDRT 75
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BLAST of mRNA_P-fluviatile_contig16.2634.1 vs. uniprot
Match: A0A835ZBU4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBU4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.390e-10
Identity = 30/67 (44.78%), Postives = 46/67 (68.66%), Query Frame = 2 
Query:   50 LYKALIG-LPITEQQKVFLGVTTICAICAVPVLRPNRPKPGHGLFDSEKPQEVQLAQEEARRKNLNI 247
            ++  L+G LP+ E  +  +G   +CAICA+P++   + KPGHGLFDSEKPQE++ AQ+  R+  L +
Sbjct:    1 MFAKLLGKLPLGESGQALVGTAIVCAICAIPMIN-RKTKPGHGLFDSEKPQEIEQAQDAQRKATLGV 66
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU85_ECTSI8.350e-3786.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZBU4_9STRA2.390e-1044.78Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:222095..224964 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue6.2e-08
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.4206
EggNOG OGs2E6M3@1,2SDAC@2759,3QGEB@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_003120.1
Exons2
Model size1237
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2634.1prot_P-fluviatile_contig16.2634.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 223070..224930 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.626758-UTR-P-fluviatile_contig16:222094..2230691622815681.626758-UTR-P-fluviatile_contig16:222094..223069Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 222095..223069 -
1693562886.8500254-UTR-P-fluviatile_contig16:222094..2230691693562886.8500254-UTR-P-fluviatile_contig16:222094..223069Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 222095..223069 -
1622815681.6672003-UTR-P-fluviatile_contig16:224930..2249641622815681.6672003-UTR-P-fluviatile_contig16:224930..224964Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 224931..224964 -
1693562886.8813257-UTR-P-fluviatile_contig16:224930..2249641693562886.8813257-UTR-P-fluviatile_contig16:224930..224964Porterinema fluviatile SAG_2381UTRP-fluviatile_contig16 224931..224964 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.638864-CDS-P-fluviatile_contig16:223069..2232371622815681.638864-CDS-P-fluviatile_contig16:223069..223237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 223070..223237 -
1693562886.8615234-CDS-P-fluviatile_contig16:223069..2232371693562886.8615234-CDS-P-fluviatile_contig16:223069..223237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 223070..223237 -
1622815681.6491172-CDS-P-fluviatile_contig16:224870..2249301622815681.6491172-CDS-P-fluviatile_contig16:224870..224930Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 224871..224930 -
1693562886.8717206-CDS-P-fluviatile_contig16:224870..2249301693562886.8717206-CDS-P-fluviatile_contig16:224870..224930Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 224871..224930 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2634.1

>prot_P-fluviatile_contig16.2634.1 ID=prot_P-fluviatile_contig16.2634.1|Name=mRNA_P-fluviatile_contig16.2634.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
MVAARLYKALIGLPITEQQKVFLGVTTICAICAVPVLRPNRPKPGHGLFD
SEKPQEVQLAQEEARRKNLNIGDRT*
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mRNA from alignment at P-fluviatile_contig16:222095..224964-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2634.1 ID=mRNA_P-fluviatile_contig16.2634.1|Name=mRNA_P-fluviatile_contig16.2634.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2870bp|location=Sequence derived from alignment at P-fluviatile_contig16:222095..224964- (Porterinema fluviatile SAG_2381)
CCGCACATCAAAGCTCTCGTCGGACTCGCTCGCGATGGTGGCGGCAAGGC
TTTACAAAGCGCTCATTGGGCTCCCTATCACTGAGCAGCAAAAGGTGCGG
ATACTGTGTGCGGACAGCGGAACAAATTAACGAAGCTCTCTAATACTCCC
TAACTCGGGAATCTGCTGAACAGTCCTGTATGTCTCTCTCTCCCTCTCCC
TCTCCTGCTATTCTACTTGTATCTGGTGACCGCATGTCACACTTATCACA
AGTGTGCCCCCCTTAGCAGCAGTCTTACTCTGTCGCCGCCGTTCAATTCC
TCTCCGTTTTCACGATCGACAAAATTTCGCTGACAAGCGCGCCCACTAAT
GGAGCCGTCTGACAACCCTCCTGCTGTCAGACCCGATATGGTGAGAGCTC
TGGCTGAGTTCAACGCTGCCGTCAGACGTCAACAGGATATTGTCTGCAGC
GTCCCATATTGGCTCGAGTGGCATTGCTTTTCACGCAAAGCTGACATCCA
TATGTTTCTTGCTGCCGTCCAGGCGCACCCAAGGTACATTCAAAACCCCC
GTGTAAAATGACAAAAAGGGGTTTGATTTTTTGCTCCAAGAATGCAAATA
CGCTAAAAGCGACATTTGTATCTGATCGTTATTTCCCGACACTATTGAAC
CGTCCGAAGATTGATGCTCTGGTAAAGCAGCGTACGAAATTTAAAAGTCG
ATTCTTCCCACGTCGCTTCTACTCGTGGTCGCTGTCGCTCCTCTCCATTC
TCAATGGCTCGACACGCAACCACAAGCCAGGACGGCAGTCGGTATCCATC
TGTTGCTGGTAAAAGTCGCACCCACTCGCGAGTCGCCAGGATAGCGTGAG
GAATACTGCTGGGATCATATCCTTTTTACCTTTCCTCCACCCTAGGAACG
GTTCTCCAGCTCGACAGGGATGCACGGTCAATGGTCAAATGCCTAAGGCA
AGCAAAATATGAGTACTCCCCCACTGCCGGAAATTGAGAGGAATTTTGCC
AAAAAGCCTTTCGACATCGCACACATCTATCTCAACTTCAAGTAGGAGTT
CGGGCGTAAATCATGAATGAATCATCAACGACGTCGTCTAACTTCGTTTC
GTTGGGTCCAACACGATCGAATGATCGATGCCACCTTCACAATGTTCGCT
TGGATGTTTATGCAGCCCTTGATGACCCATTTATTCAGGGAAGGGTGGGG
AGATGTCTCGCGGTCACTCCTGTACGCACGCGTATCTCCCACGACGGCAT
GCTCAGTCGACAAGCAGCTATGCCACCTTTTTTGTCTTCCAAGCTCTTCC
GGACGAAGATATGTCCTCGAAGTCATGGCCAACCGCGCCAGTTGCGCTTC
AGTTACTATACATGATTTTCGTCGGAGAACAAGCTAAGAAATTTCGGGGT
GACGTGAATGCCTGTGATTGCTCTGCGAAGCGAAAAAGAAGCCCGTCGCT
TGCGGAAAAAAATTATCTCCTTGTGCTTTGTGGGGCTCCTTGCTGTCCAG
TAGGTCAGCACATTTCCCGCGAAGCTCGCGTTTTCAAGGCAGTCGCTGGA
CTGCTTTGTTCAGGCCTGATGCCTACAACACGGCGGAATAAACCTTCTCC
CATTCATCCTGCCTCTGTCTTGACCTCGAAATATATCGCTCGCTTCGCAA
ACGGGGTCGGTCACATGTGCTCCCCTCCCCCCTCGCTCTCTCGCCGCAAC
CCGTCGTCATCGTTCTCTCTCTCTCAGGTGTTCCTCGGCGTAACGACCAT
ATGTGCCATCTGCGCAGTCCCCGTTCTCCGGCCCAATCGACCCAAGCCGG
GCCACGGACTCTTCGACAGCGAGAAGCCCCAAGAGGTACAGCTGGCGCAG
GAGGAGGCCAGGAGAAAGAATCTGAACATCGGCGATCGAACCTAAGCTAG
CTGGCTCGCTGGTTGGGCTCGAGTCATGTCAACATCGGTGATCGAACTTT
TACCTCGCGGGCGCCTTGGGTGAAAGATATCTCGACATCGGCGATCGAGT
TTGGAGCTGGCAAATTGGGTTGGGATGAGATGGAGGACTTGCTGGTTCAG
CAGTTGTACGGAAACGAGGTTGACATTTGTCCGAGGAGTGCTTTCGAAAA
TGGACCCGGCACACCAGTAGGATATCGGGATGAAAGAACGTCGACAAGGA
CTTCCGTGGGGGGTTGACGATTGGGAGTGGAGCTAGCCGCGCGGGCAGCA
AACAGGCGTTTCCCAATGAAGTCTTGCCAATGAATGCGTCAACATTAGAT
GACTCGTTCGAGGAGCGCCAGACGGGAGAGGAGCAAGCAAGGAGCTTGAC
ACCGGCGATCCAGTGGCTAGCTGCAGATATTGTGCACTCACGAGGAGCAC
TGCGGTCCCATTGAAAGATGTCAAGTTGCCACACACCGTTGTATAGAACA
CACCCCCCACAAGCTGTGCAGTGTTTGTGTTTAGATTTGGGTGACAAGAA
AGATGCTTTCATTCATGCGTCTCTTGTCACTTAGGTTTCGTTTTGTTACG
AGTTGCTTTTTTTCGAGAGGTATGCTCGATTCGGCTCTAGCAGCACGAGT
CTAGAGAACCCGCACTTCCGGGCTGATGCGGTGATTTCATGTAGCTGTGG
AAATTTTAAACGTGGCCGACGACTGCATTTGTTTTCTTCGGTGGTCTCGA
GACTGATTCGTTTGCTGATACACGCATTTGGCGATACACGGACCTTTCCA
GGTCACAGCAGTTGAATGCAGCTGGTGGCGGCAACGTGACCTCGCGTTGC
TCGAGGTAATGTATTGTCGCTTCTTACAACGGCTACAAGTTTCCGAGCCA
CTTCCACCACCAGGCGAACGGAACCCGGGAACCCTGAGCGCAAGTATCGA
GAGTTTTGACAGCAAGGAAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:222095..224964-

>mRNA_P-fluviatile_contig16.2634.1 ID=mRNA_P-fluviatile_contig16.2634.1|Name=mRNA_P-fluviatile_contig16.2634.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=456bp|location=Sequence derived from alignment at P-fluviatile_contig16:222095..224964- (Porterinema fluviatile SAG_2381)
ATGGTGGCGGCAAGGCTTTACAAAGCGCTCATTGGGCTCCCTATCACTGA
GCAGCAAAAGATGGTGGCGGCAAGGCTTTACAAAGCGCTCATTGGGCTCC
CTATCACTGAGCAGCAAAAGGTGTTCCTCGGCGTAACGACCATATGTGCC
ATCTGCGCAGTCCCCGTTCTCCGGCCCAATCGACCCAAGCCGGGCCACGG
ACTCTTCGACAGCGAGAAGCCCCAAGAGGTACAGCTGGCGCAGGAGGAGG
CCAGGAGAAAGAATCTGAACATCGGCGATCGAACCTAAGTGTTCCTCGGC
GTAACGACCATATGTGCCATCTGCGCAGTCCCCGTTCTCCGGCCCAATCG
ACCCAAGCCGGGCCACGGACTCTTCGACAGCGAGAAGCCCCAAGAGGTAC
AGCTGGCGCAGGAGGAGGCCAGGAGAAAGAATCTGAACATCGGCGATCGA
ACCTAA
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