mRNA_P-fluviatile_contig16.2629.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig16.2629.1
Unique NamemRNA_P-fluviatile_contig16.2629.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig16.2629.1 vs. uniprot
Match: A0A6H5K2A3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A3_9PHAE)

HSP 1 Score: 263 bits (672), Expect = 3.950e-78
Identity = 154/221 (69.68%), Postives = 160/221 (72.40%), Query Frame = 1 
Query:    1 DGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKELELARVEDELRLRKSGAWFVAGPAAGAVPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSNKPKQGRGPYKK-TPRITDEAEREGVKAMVKAIGEAFQRAKVRTEVSGKRDGVHQYMALPSKQASRFYLVRHLVKNDAEFAPG 660
            +GEVSFKGGIRRMLDERR RLSGGSDTPSD SSTTDEDLDV FIRVEKELKL+TKELELARVEDELRLRKS AWFVAGPA GAVPAT                                                AVS +PKQGR  YKK TPR TDEA+REGVKAMVKAIGEAFQRAKVRTEV+ KRDGVH YMALPS QASRFYLVR+LVKNDAEFAPG
Sbjct:  878 EGEVSFKGGIRRMLDERRGRLSGGSDTPSDISSTTDEDLDVHFIRVEKELKLRTKELELARVEDELRLRKSDAWFVAGPAVGAVPATGSYGAAPASGA-------------------------------------AVSKQPKQGRRLYKKKTPRTTDEAKREGVKAMVKAIGEAFQRAKVRTEVNDKRDGVHHYMALPSNQASRFYLVRYLVKNDAEFAPG 1061
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BLAST of mRNA_P-fluviatile_contig16.2629.1 vs. uniprot
Match: D8LJ26_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ26_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 7.430e-53
Identity = 122/167 (73.05%), Postives = 126/167 (75.45%), Query Frame = 1 
Query:   37 MLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKELELARVEDELRLRKSGAWFVAGPAAGAVPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVSNKPKQGRGPYKKTPRITDEAEREGVKAMVKAIGEAFQRAKV 537
            MLDERR RLSGGSDT SDASSTTDEDLDVQFIRVEKELKLKTKELE+ARVEDELRLRKSGAWFV GPAAGAVPA XXXXXXXXXXXXXXXX                                AVS + KQGRGPYKKT R TDEAERE VKAMVKA+GEAFQRAK+
Sbjct:    1 MLDERRLRLSGGSDTSSDASSTTDEDLDVQFIRVEKELKLKTKELEMARVEDELRLRKSGAWFVTGPAAGAVPAXXXXXXXXXXXXXXXXXTNIPARAAISSVPKSAAPVTGSADGTASASGVAVSKQLKQGRGPYKKTSRTTDEAEREEVKAMVKAVGEAFQRAKL 167
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BLAST of mRNA_P-fluviatile_contig16.2629.1 vs. uniprot
Match: D8LKS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS3_ECTSI)

HSP 1 Score: 96.3 bits (238), Expect = 9.930e-23
Identity = 50/57 (87.72%), Postives = 53/57 (92.98%), Query Frame = 1 
Query:    1 DGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKELKLKTKEL 171
            +GEVSF GGIRR LDERRRRL GGSD PSDASSTTD+DLDVQFIRVEKEL+LKTKEL
Sbjct:    2 EGEVSFSGGIRRKLDERRRRLRGGSDNPSDASSTTDQDLDVQFIRVEKELELKTKEL 58
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BLAST of mRNA_P-fluviatile_contig16.2629.1 vs. uniprot
Match: D8LBS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBS5_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.720e-10
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:  427 QGRGPYKKTPRITDEAEREGVKAMVKAIGEAFQRAKV 537
            +G GPYKKTPRITDEAEREGV+AMVKAIGEAFQRAK+
Sbjct:   45 RGWGPYKKTPRITDEAEREGVEAMVKAIGEAFQRAKM 81
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BLAST of mRNA_P-fluviatile_contig16.2629.1 vs. uniprot
Match: A0A6H5JH42_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH42_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 6.240e-8
Identity = 33/41 (80.49%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:    1 DGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDV 123
            +GEVS    IRRMLDER RRLSGGS+TPSDASSTTDED DV
Sbjct:  280 EGEVSSNRDIRRMLDERPRRLSGGSNTPSDASSTTDEDRDV 320
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig16.2629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K2A3_9PHAE3.950e-7869.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ26_ECTSI7.430e-5373.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LKS3_ECTSI9.930e-2387.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBS5_ECTSI1.720e-1089.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH42_9PHAE6.240e-880.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig16contigP-fluviatile_contig16:158830..159604 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_005340.1
Exons2
Model size660
Cds size660
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.1306446-CDS-P-fluviatile_contig16:158829..1590391622815681.1306446-CDS-P-fluviatile_contig16:158829..159039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 158830..159039 -
1693562885.7691095-CDS-P-fluviatile_contig16:158829..1590391693562885.7691095-CDS-P-fluviatile_contig16:158829..159039Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 158830..159039 -
1622815681.141548-CDS-P-fluviatile_contig16:159154..1596041622815681.141548-CDS-P-fluviatile_contig16:159154..159604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 159155..159604 -
1693562885.7796469-CDS-P-fluviatile_contig16:159154..1596041693562885.7796469-CDS-P-fluviatile_contig16:159154..159604Porterinema fluviatile SAG_2381CDSP-fluviatile_contig16 159155..159604 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig16.2629.1prot_P-fluviatile_contig16.2629.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig16 158830..159604 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig16.2629.1

>prot_P-fluviatile_contig16.2629.1 ID=prot_P-fluviatile_contig16.2629.1|Name=mRNA_P-fluviatile_contig16.2629.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=220bp
DGEVSFKGGIRRMLDERRRRLSGGSDTPSDASSTTDEDLDVQFIRVEKEL
KLKTKELELARVEDELRLRKSGAWFVAGPAAGAVPATGSSADAAPMTGTA
ACATTVAAGAAVSRVPKSAAPVTGSTGGAAPAPGAAVSNKPKQGRGPYKK
TPRITDEAEREGVKAMVKAIGEAFQRAKVRTEVSGKRDGVHQYMALPSKQ
ASRFYLVRHLVKNDAEFAPG
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mRNA from alignment at P-fluviatile_contig16:158830..159604-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig16.2629.1 ID=mRNA_P-fluviatile_contig16.2629.1|Name=mRNA_P-fluviatile_contig16.2629.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=775bp|location=Sequence derived from alignment at P-fluviatile_contig16:158830..159604- (Porterinema fluviatile SAG_2381)
GACGGGGAAGTGTCTTTCAAGGGAGGCATCAGGAGAATGCTGGACGAGAG
ACGTCGCCGACTCAGCGGGGGATCGGACACCCCCTCGGATGCCAGCAGCA
CGACCGACGAAGACCTTGACGTGCAATTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTCGTGGCCGGCCCTGCCGCTGGCGCCG
TACCTGCCACCGGCTCTTCTGCTGATGCGGCACCCATGACTGGGACTGCT
GCTTGCGCTACAACAGTTGCTGCTGGCGCTGCTGTCTCGAGAGTGCCCAA
GAGCGCCGCACCCGTGACTGGCTCTACAGGTGGTGCTGCACCCGCTCCTG
GCGCGGCTGTCTCCAACAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAG
GTAAGCGCATTGTTCCTTGATATCATGAGAAGAGTTGGGGTTAGATATGG
GAACACTCCAATATTTTTTGAGAAAAATAAACTTATGGTGTACGATACCG
ACGAATCGTTTGCAGACGCCTCGGATAACCGACGAGGCCGAACGCGAAGG
GGTGAAGGCGATGGTGAAGGCGATTGGCGAAGCCTTCCAGCGGGCCAAAG
TCAGGACCGAGGTCAGCGGCAAGAGAGACGGTGTTCATCAGTACATGGCT
TTGCCCAGCAAACAAGCTTCGAGGTTTTATCTGGTTCGGCACTTGGTAAA
GAACGACGCCGAATTCGCCCCAGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig16:158830..159604-

>mRNA_P-fluviatile_contig16.2629.1 ID=mRNA_P-fluviatile_contig16.2629.1|Name=mRNA_P-fluviatile_contig16.2629.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1320bp|location=Sequence derived from alignment at P-fluviatile_contig16:158830..159604- (Porterinema fluviatile SAG_2381)
GACGGGGAAGTGTCTTTCAAGGGAGGCATCAGGAGAATGCTGGACGAGAG
ACGTCGCCGACTCAGCGGGGGATCGGACACCCCCTCGGATGCCAGCAGCA
CGACCGACGAAGACCTTGACGTGCAATTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTCGTGGCCGGCCCTGCCGCTGGCGCCG
TACCTGCCACCGGCTCTTCTGCTGATGCGGCACCCATGACTGGGACTGCT
GCTTGCGCTACAACAGTTGCTGCTGGCGCTGCTGTCTCGAGAGTGCCCAA
GAGCGCCGCACCCGTGACTGGCTCTACAGGTGGTGCTGCACCCGCTCCTG
GCGCGGCTGTCTCCAACAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAG
GACGGGGAAGTGTCTTTCAAGGGAGGCATCAGGAGAATGCTGGACGAGAG
ACGTCGCCGACTCAGCGGGGGATCGGACACCCCCTCGGATGCCAGCAGCA
CGACCGACGAAGACCTTGACGTGCAATTCATCCGAGTCGAGAAGGAGCTG
AAGTTGAAGACGAAGGAACTCGAGTTGGCGAGGGTGGAGGACGAACTCCG
CCTCCGCAAGTCTGGCGCATGGTTCGTGGCCGGCCCTGCCGCTGGCGCCG
TACCTGCCACCGGCTCTTCTGCTGATGCGGCACCCATGACTGGGACTGCT
GCTTGCGCTACAACAGTTGCTGCTGGCGCTGCTGTCTCGAGAGTGCCCAA
GAGCGCCGCACCCGTGACTGGCTCTACAGGTGGTGCTGCACCCGCTCCTG
GCGCGGCTGTCTCCAACAAGCCCAAGCAAGGCCGGGGCCCGTACAAGAAG
ACGCCTCGGATAACCGACGAGGCCGAACGCGAAGGGGTGAAGGCGATGGT
GAAGGCGATTGGCGAAGCCTTCCAGCGGGCCAAAGTCAGGACCGAGGTCA
GCGGCAAGAGAGACGGTGTTCATCAGTACATGGCTTTGCCCAGCAAACAA
GCTTCGAGGTTTTATCTGGTTCGGCACTTGGTAAAGAACGACGCCGAATT
CGCCCCAGGGACGCCTCGGATAACCGACGAGGCCGAACGCGAAGGGGTGA
AGGCGATGGTGAAGGCGATTGGCGAAGCCTTCCAGCGGGCCAAAGTCAGG
ACCGAGGTCAGCGGCAAGAGAGACGGTGTTCATCAGTACATGGCTTTGCC
CAGCAAACAAGCTTCGAGGTTTTATCTGGTTCGGCACTTGGTAAAGAACG
ACGCCGAATTCGCCCCAGGG
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