mRNA_P-fluviatile_contig15.2620.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2620.1
Unique NamemRNA_P-fluviatile_contig15.2620.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:3081264..3081750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size487
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2620.1prot_P-fluviatile_contig15.2620.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 3081306..3081656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.6244738-UTR-P-fluviatile_contig15:3081263..30813051622815642.6244738-UTR-P-fluviatile_contig15:3081263..3081305Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 3081264..3081305 +
1693562652.228359-UTR-P-fluviatile_contig15:3081263..30813051693562652.228359-UTR-P-fluviatile_contig15:3081263..3081305Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 3081264..3081305 +
1622815642.6523683-UTR-P-fluviatile_contig15:3081656..30817501622815642.6523683-UTR-P-fluviatile_contig15:3081656..3081750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 3081657..3081750 +
1693562652.2659173-UTR-P-fluviatile_contig15:3081656..30817501693562652.2659173-UTR-P-fluviatile_contig15:3081656..3081750Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 3081657..3081750 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.6378615-CDS-P-fluviatile_contig15:3081305..30816561622815642.6378615-CDS-P-fluviatile_contig15:3081305..3081656Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 3081306..3081656 +
1693562652.246122-CDS-P-fluviatile_contig15:3081305..30816561693562652.246122-CDS-P-fluviatile_contig15:3081305..3081656Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 3081306..3081656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2620.1

>prot_P-fluviatile_contig15.2620.1 ID=prot_P-fluviatile_contig15.2620.1|Name=mRNA_P-fluviatile_contig15.2620.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=117bp
MYPVVPAPAKRDSPAVYGYHRFFVCTMIRKHQLEIDVGTQLLGVDARVFP
NKETNEQEVKSWNSNSRRRSKLSIGGSCQASFKVARIYSRASPWSVRIRV
CPTLKEQIVIQETLSG*
back to top

mRNA from alignment at P-fluviatile_contig15:3081264..3081750+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2620.1 ID=mRNA_P-fluviatile_contig15.2620.1|Name=mRNA_P-fluviatile_contig15.2620.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=487bp|location=Sequence derived from alignment at P-fluviatile_contig15:3081264..3081750+ (Porterinema fluviatile SAG_2381)
GTCGTCTCGGAGTTGGCGGTCTGCTAGTGTGTGTGCTCTTGGATGTATCC
AGTGGTGCCCGCCCCCGCCAAGAGGGATTCGCCTGCGGTGTATGGGTATC
ATCGATTCTTCGTTTGCACAATGATAAGAAAGCATCAACTCGAAATAGAC
GTCGGCACGCAGCTCCTTGGAGTTGATGCACGGGTATTTCCCAACAAAGA
AACTAATGAACAAGAGGTGAAGAGTTGGAATTCAAATTCGCGAAGACGTT
CAAAGCTATCTATCGGAGGAAGTTGTCAGGCCTCGTTCAAGGTTGCACGA
ATATATTCTCGTGCCTCTCCTTGGAGTGTACGCATTCGTGTTTGCCCAAC
CCTAAAAGAACAAATAGTCATTCAGGAAACACTGTCGGGTTAGGCTGGTC
ATGCCTGTCAACGGCTGCAAAAAAGAAAATATTTTCCGGCATGTTTTCGT
TTAAAGTGTTGTAACGTGTTCACGACCCCGCCGTCCC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig15:3081264..3081750+

>mRNA_P-fluviatile_contig15.2620.1 ID=mRNA_P-fluviatile_contig15.2620.1|Name=mRNA_P-fluviatile_contig15.2620.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=702bp|location=Sequence derived from alignment at P-fluviatile_contig15:3081264..3081750+ (Porterinema fluviatile SAG_2381)
ATGTATCCAGTGGTGCCCGCCCCCGCCAAGAGGGATTCGCCTGCGGTGTA
TGGGTATCATCGATTCTTCGTTTGCACAATGATAAGAAAGCATCAACTCG
AAATAGACGTCGGCACGCAGCTCCTTGGAGTTGATGCACGGGTATTTCCC
AACAAAGAAACTAATGAACAAGAGGTGAAGAGTTGGAATTCAAATTCGCG
AAGACGTTCAAAGCTATCTATCGGAGGAAGTTGTCAGGCCTCGTTCAAGG
TTGCACGAATATATTCTCGTGCCTCTCCTTGGAGTGTACGCATTCGTGTT
TGCCCAACCCTAAAAGAACAAATAGTCATTCAGGAAACACTGTCGGGTTA
GATGTATCCAGTGGTGCCCGCCCCCGCCAAGAGGGATTCGCCTGCGGTGT
ATGGGTATCATCGATTCTTCGTTTGCACAATGATAAGAAAGCATCAACTC
GAAATAGACGTCGGCACGCAGCTCCTTGGAGTTGATGCACGGGTATTTCC
CAACAAAGAAACTAATGAACAAGAGGTGAAGAGTTGGAATTCAAATTCGC
GAAGACGTTCAAAGCTATCTATCGGAGGAAGTTGTCAGGCCTCGTTCAAG
GTTGCACGAATATATTCTCGTGCCTCTCCTTGGAGTGTACGCATTCGTGT
TTGCCCAACCCTAAAAGAACAAATAGTCATTCAGGAAACACTGTCGGGTT
AG
back to top