mRNA_P-fluviatile_contig15.2619.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2619.1
Unique NamemRNA_P-fluviatile_contig15.2619.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2619.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:3081081..3082825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size326
Cds size288
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2619.1prot_P-fluviatile_contig15.2619.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 3081117..3082825 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.966096-UTR-P-fluviatile_contig15:3081080..30811161622815640.966096-UTR-P-fluviatile_contig15:3081080..3081116Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 3081081..3081116 -
1693562647.726543-UTR-P-fluviatile_contig15:3081080..30811161693562647.726543-UTR-P-fluviatile_contig15:3081080..3081116Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 3081081..3081116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.9829586-CDS-P-fluviatile_contig15:3081116..30813451622815640.9829586-CDS-P-fluviatile_contig15:3081116..3081345Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 3081117..3081345 -
1693562647.7345397-CDS-P-fluviatile_contig15:3081116..30813451693562647.7345397-CDS-P-fluviatile_contig15:3081116..3081345Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 3081117..3081345 -
1622815640.9955645-CDS-P-fluviatile_contig15:3082766..30828251622815640.9955645-CDS-P-fluviatile_contig15:3082766..3082825Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 3082767..3082825 -
1693562647.747562-CDS-P-fluviatile_contig15:3082766..30828251693562647.747562-CDS-P-fluviatile_contig15:3082766..3082825Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 3082767..3082825 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2619.1

>prot_P-fluviatile_contig15.2619.1 ID=prot_P-fluviatile_contig15.2619.1|Name=mRNA_P-fluviatile_contig15.2619.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=96bp
ARVRGTWGCDLSLWPQSYIRRIPLGGGGHHWIHPRAHTLADRQLRDDSAL
ALDQVRESVEDGDTDGLRQVVFVHEYGAAWLLSRLLQLRGHCGPP*
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mRNA from alignment at P-fluviatile_contig15:3081081..3082825-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2619.1 ID=mRNA_P-fluviatile_contig15.2619.1|Name=mRNA_P-fluviatile_contig15.2619.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1745bp|location=Sequence derived from alignment at P-fluviatile_contig15:3081081..3082825- (Porterinema fluviatile SAG_2381)
GCGCGAGTGCGAGGGACCTGGGGCTGCGACCTGTCCTTGTGGCCACAGAG
CTACATAAGGTCAGATAGTTATGAATGTGCGCTTTTGCGAACTTTTCACC
GACTTCTCGCAATGAGTCACGCAGCAGTCATGCAGTGGGGTGTTGTGTGT
TCAGCAGCAGTAGTGACGAGACGCTATACTTCCAAATCCAAGTCTATTCT
TCAAGCAATAGACCGCTTGCAGTAAGAGTCACAAGTGAAAAAATGCTCCG
GGCGTAACCCCCGTACCCACCACCCATAGCGCGGCCTATTAAATATTTGA
AAACGAGTCCCCTGTTCGACACTTCACACCGCACACGCAAACACACGCTA
CACACGCTCGAGGGCACCCCAATCCCTCGGGGGACGACTTGGGGAACCCG
CCGGAGATTGCAACGATGGAAGCTTGACTTGACCGCAGTGGTGGCAGCGG
AAAGGTTATGACGAAGAGAAAATGTGTCTGCGTGTCCCCGTGCTGGCTGG
AGTAACGGAGATTAGGGTCACGTGCGGGTGCCTCGGCGTATTCGGGAGAG
GTATCAAGAATTTAGCGATCTGACTGCATGGCCCTATGTTTGGGGCATTT
TGCGGCCATGGATGTGGTGGCGAGCACGCAAGGCAGCGGGCCAGCTGAAA
CGGAAGTGAAGGTGACGATCAAAATGGGGGCCAGGGCATGTAGGTGGCCG
ACAGAGATTTTAACTCAACGGCGCTGCTGGTAAGAGCTGGGATGCATTGC
GTGCCTCCCGCGAGCAAGCGCAAGGATGAGGCGCGATTAACCCAGCAAGA
CGCTGCCCTCACTGGAGACGTGGCGAATCTCCGTATTCACGTTGAAAGGG
CAAGTGGAGCCATGAAGCGGTGGTGGATCCTGGCATTAAACGTCTATTAA
TAGCAGATGGACAAGATCGGTGAAATATCGCTTGACTGCGCGGCGCTCAC
GAACCTCACCCACAAACCATTTGCGAGTCAAGCGTGATAGATGCTCGCAT
CCTGTCCTTGTTCCGTGCGATCTTGGGTTTCGAGAGTGCTTGAGCAGTGT
GCATAGAAGTGTGTAAAGCGGGACGGGGACGGCGGGGTCGTGAACACGTT
ACAACACTTTAAACGAAAACATGCCGGAAAATATTTTCTTTTTTGCAGCC
GTTGACAGGCATGACCAGCCTAACCCGACAGTGTTTCCTGAATGACTATT
TGTTCTTTTAGGGTTGGGCAAACACGAATGCGTACACTCCAAGGAGAGGC
ACGAGAATATATTCGTGCAACCTTGAACGAGGCCTGACAACTTCCTCCGA
TAGATAGCTTTGAACGTCTTCGCGAATTTGAATTCCAACTCTTCACCTCT
TGTTCATTAGTTTCTTTGTTGGGAAATACCCGTGCATCAACTCCAAGGAG
CTGCGTGCCGACGTCTATTTCGAGTTGATGCTTTCTTATCATTGTGCAAA
CGAAGAATCGATGATACCCATACACCGCAGGCGAATCCCTCTTGGCGGGG
GCGGGCACCACTGGATACATCCAAGAGCACACACACTAGCAGACCGCCAA
CTCCGAGACGACTCAGCCCTCGCTCTTGACCAGGTCCGCGAATCCGTCGA
GGATGGCGACACTGACGGTCTGCGCCAAGTCGTCTTTGTCCACGAGTACG
GTGCCGCTTGGCTCCTCTCGCGGCTGCTGCAGTTGCGTGGACATTGTGGC
CCACCTTAAGCGGTAGTGCAAACGTAAAGAAAAACACGTGGGGGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:3081081..3082825-

>mRNA_P-fluviatile_contig15.2619.1 ID=mRNA_P-fluviatile_contig15.2619.1|Name=mRNA_P-fluviatile_contig15.2619.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=576bp|location=Sequence derived from alignment at P-fluviatile_contig15:3081081..3082825- (Porterinema fluviatile SAG_2381)
GCGCGAGTGCGAGGGACCTGGGGCTGCGACCTGTCCTTGTGGCCACAGAG
CTACATAAGGCGCGAGTGCGAGGGACCTGGGGCTGCGACCTGTCCTTGTG
GCCACAGAGCTACATAAGGCGAATCCCTCTTGGCGGGGGCGGGCACCACT
GGATACATCCAAGAGCACACACACTAGCAGACCGCCAACTCCGAGACGAC
TCAGCCCTCGCTCTTGACCAGGTCCGCGAATCCGTCGAGGATGGCGACAC
TGACGGTCTGCGCCAAGTCGTCTTTGTCCACGAGTACGGTGCCGCTTGGC
TCCTCTCGCGGCTGCTGCAGTTGCGTGGACATTGTGGCCCACCTTAAGCG
AATCCCTCTTGGCGGGGGCGGGCACCACTGGATACATCCAAGAGCACACA
CACTAGCAGACCGCCAACTCCGAGACGACTCAGCCCTCGCTCTTGACCAG
GTCCGCGAATCCGTCGAGGATGGCGACACTGACGGTCTGCGCCAAGTCGT
CTTTGTCCACGAGTACGGTGCCGCTTGGCTCCTCTCGCGGCTGCTGCAGT
TGCGTGGACATTGTGGCCCACCTTAA
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