mRNA_P-fluviatile_contig15.2579.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2579.1
Unique NamemRNA_P-fluviatile_contig15.2579.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
[Close]
BLAST of mRNA_P-fluviatile_contig15.2579.1 vs. uniprot
Match: D7FI02_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI02_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.360e-30
Identity = 83/211 (39.34%), Postives = 106/211 (50.24%), Query Frame = 3 
Query:   84 MASERVKLVVLLAVLACVVNSFFNSDVFKRGASAGFAIKLHEGYACQCRREELRDECRAALSQARVSAELSCLPFFRALFVCRNPL--GVNNDERG---CSDEVHQLAECFQEHIGPYGFSHEEIWRLLFG-KQQPAPKRKPFVDVA---REGGVEVKGNREIAGGGTEAGDMIEGAGKKEANLGNEVPERGDRPKVDVEQGPKDGADRGR 689
            M+ ER KLVVL  VLA +  S+  SDVF RG      +   E   C+ R    RD C+A L+ A   A+LSC+  F     CR+P   G     R    C  E  ++ EC Q H+ PYGFS EEI+RL++  +QQP P  KP V+V+   REG  + K N +   G        + AG K AN G E       PKV+VE  PK G    R
Sbjct:    1 MSGERAKLVVLGLVLAVIARSYIMSDVFTRGYMMSSTLGFFEDNLCKGRPPADRDGCKATLATALAPAKLSCMSVFHDFVRCRDPADGGXXXXXRNNLPCQKENQKIFECLQAHLAPYGFSDEEIFRLIYKTQQQPPPPSKPSVEVSDHGREGDEKAKANEKPGEG--------DNAGGKSANRGEETDVEKGGPKVEVEHEPKQGGGGAR 203
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FI02_ECTSI1.360e-3039.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2562743..2564742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size1005
Cds size609
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2579.1prot_P-fluviatile_contig15.2579.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2563056..2564659 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.4420912-UTR-P-fluviatile_contig15:2562742..25630551622815670.4420912-UTR-P-fluviatile_contig15:2562742..2563055Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2562743..2563055 -
1693562839.7891312-UTR-P-fluviatile_contig15:2562742..25630551693562839.7891312-UTR-P-fluviatile_contig15:2562742..2563055Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2562743..2563055 -
1622815670.5054142-UTR-P-fluviatile_contig15:2564659..25647421622815670.5054142-UTR-P-fluviatile_contig15:2564659..2564742Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2564660..2564742 -
1693562839.8342383-UTR-P-fluviatile_contig15:2564659..25647421693562839.8342383-UTR-P-fluviatile_contig15:2564659..2564742Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2564660..2564742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815670.4591923-CDS-P-fluviatile_contig15:2563055..25633431622815670.4591923-CDS-P-fluviatile_contig15:2563055..2563343Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2563056..2563343 -
1693562839.799587-CDS-P-fluviatile_contig15:2563055..25633431693562839.799587-CDS-P-fluviatile_contig15:2563055..2563343Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2563056..2563343 -
1622815670.4727573-CDS-P-fluviatile_contig15:2563562..25637791622815670.4727573-CDS-P-fluviatile_contig15:2563562..2563779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2563563..2563779 -
1693562839.8128312-CDS-P-fluviatile_contig15:2563562..25637791693562839.8128312-CDS-P-fluviatile_contig15:2563562..2563779Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2563563..2563779 -
1622815670.4896274-CDS-P-fluviatile_contig15:2564555..25646591622815670.4896274-CDS-P-fluviatile_contig15:2564555..2564659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2564556..2564659 -
1693562839.8257515-CDS-P-fluviatile_contig15:2564555..25646591693562839.8257515-CDS-P-fluviatile_contig15:2564555..2564659Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2564556..2564659 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2579.1

>prot_P-fluviatile_contig15.2579.1 ID=prot_P-fluviatile_contig15.2579.1|Name=mRNA_P-fluviatile_contig15.2579.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=203bp
MASERVKLVVLLAVLACVVNSFFNSDVFKRGASAGFAIKLHEGYACQCRR
EELRDECRAALSQARVSAELSCLPFFRALFVCRNPLGVNNDERGCSDEVH
QLAECFQEHIGPYGFSHEEIWRLLFGKQQPAPKRKPFVDVAREGGVEVKG
NREIAGGGTEAGDMIEGAGKKEANLGNEVPERGDRPKVDVEQGPKDGADR
GR*
back to top

mRNA from alignment at P-fluviatile_contig15:2562743..2564742-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2579.1 ID=mRNA_P-fluviatile_contig15.2579.1|Name=mRNA_P-fluviatile_contig15.2579.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2000bp|location=Sequence derived from alignment at P-fluviatile_contig15:2562743..2564742- (Porterinema fluviatile SAG_2381)
CGTAGTGCCGGGTCATAAGGCGTGCGAACCCTGCGACTCTCTACGAAATC
TGAGCACTCAGACGTCCGAGATCTATTTTGCCTATGGCGTCGGAGAGGGT
GAAGCTTGTGGTGTTGCTTGCGGTGCTGGCTTGTGTCGTCAATTCTTTCT
TCAACAGCGACGTTTTCAAACGCGGGGCATCGGCAGGGTGAGTCGAGTCG
CTCTCTTCGGCCGAATGTTGTATGTAACAGCGAGTTATCAGACTGACGGC
GCTGCACAGGCTCTGCTATGAGCATCAAAGAACACGCGCGCGAACGAGGT
GCTCACCCACTCCCTGTTTACCACCGCACACGTGCAGCGCACATAAACGG
CTGCGGGTTGAGTGCGCTGCTGGGGTTTGCAGCCCCGCGTTAGGCACGCA
TCGTGACGGAGGAAAATGTGCCACACGCGCTTCGTAATGAAACCCCTGAG
TCTATAATCTTTGTGCAACCGTCCAATTCTTGACGATAGAACGCGTGCGG
CGAAGTGTGGCCTTACAGTCTGCAGGGGGTTATATGAACAGCTGGCAGAC
CCGCACACACCGATTGCACATTTTCCCTCCGACAAAAGTGCATGGGTTTC
GACTGTTCCGCGAAGTCTTCACTTGTACTACATAAAATCAGATCAACATT
AAATCAGACTGAAATGCTGAAAAACATTAAATCAGATTAGTCTAAATGCT
GAAAAACATTACATCAGATTAGTCGAATGCTCCCCTTGGCTGCAAGCTAG
GGTGGAATGCGTAGGTCTTCGCCCCTCCTCGAAATCGCGCTTTACTTCTT
TGTTGTTGCTTTGCTTTTTTTTTTCTCCCCGAATACCTTCTCATGTGTTG
TATTACAAGACGGTCGGCGCCGGAGGCGGCTGCCGTCATTTCGTGATCCA
CTCCCCCATGCTAATCCAGCGTTCCGCACTTTTCGCCCTTGTAATCCCCC
CCCCCAACCCCAGCTTTGCGATAAAATTACATGAGGGATACGCATGCCAA
TGTAGGCGAGAAGAGCTGAGGGATGAGTGCAGAGCTGCGTTGAGCCAAGC
ACGTGTCTCTGCGGAGCTTTCCTGCCTTCCGTTCTTCCGCGCCTTGTTCG
TTTGTCGGAATCCTTTGGGAGTGAACAATGATGAGCGAGGCTGCTCAGAT
GAGGTGCATCAGCTTGCCGAGTGTTTCCAGGTATGCGCGCTTGCCATGCT
ACAACTTTCGTGAAAAACTCAGCTGCTGTGTAAACTAATGTACGAGGTTT
CGCATCAAACACAGCAAGATTTCGATAGAATAGTGTACCTGCCTGTTGTC
ATGATCGAACATCTGTTTCATCAAGATTGCCGCTAGAGGATACTGTGTCA
GTCGCGGTCGTCTTGTACCCTCCACCCCCTACTGCGTTTCCGCATTTAGG
AGCACATAGGACCCTACGGTTTCAGCCACGAGGAGATCTGGCGGCTTCTC
TTCGGGAAGCAGCAGCCTGCCCCGAAACGCAAACCCTTTGTGGATGTCGC
GAGGGAGGGCGGCGTAGAAGTCAAAGGAAATAGAGAGATAGCGGGCGGAG
GGACCGAGGCGGGGGATATGATTGAAGGGGCAGGTAAAAAGGAAGCAAAC
CTTGGCAATGAGGTGCCTGAGAGAGGGGACAGGCCAAAAGTGGATGTAGA
ACAGGGGCCAAAGGATGGAGCGGATAGAGGAAGATAGAGAACTTCCTTCT
GCCCTTTCGCGTGTACAGTTGAGAAAAGCCCGAATAATTGATACTCCGGA
GTATATTTTTGGCATTGCGTTTCAGTTTCTGTCGGTACCTCACAAAGGAG
AATGGCACGCCAACTCACGTGTGCATCACGCCAACAAGGGCTTACGTAAA
CGAGCAATTTTCCATGTCTTGCCCACCTTGTGTTTTCGACGAGAATTCAA
TGATGGACTCTTGATTCGCTAGCCGATACGTCGCTTCGATTGAGCAATCT
TCCGAAAACGGAAACGTAGACATGGGAAGTTACCGAAAATCTTTTCTACA
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig15:2562743..2564742-

>mRNA_P-fluviatile_contig15.2579.1 ID=mRNA_P-fluviatile_contig15.2579.1|Name=mRNA_P-fluviatile_contig15.2579.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1218bp|location=Sequence derived from alignment at P-fluviatile_contig15:2562743..2564742- (Porterinema fluviatile SAG_2381)
ATGGCGTCGGAGAGGGTGAAGCTTGTGGTGTTGCTTGCGGTGCTGGCTTG
TGTCGTCAATTCTTTCTTCAACAGCGACGTTTTCAAACGCGGGGCATCGG
CAGGATGGCGTCGGAGAGGGTGAAGCTTGTGGTGTTGCTTGCGGTGCTGG
CTTGTGTCGTCAATTCTTTCTTCAACAGCGACGTTTTCAAACGCGGGGCA
TCGGCAGGCTTTGCGATAAAATTACATGAGGGATACGCATGCCAATGTAG
GCGAGAAGAGCTGAGGGATGAGTGCAGAGCTGCGTTGAGCCAAGCACGTG
TCTCTGCGGAGCTTTCCTGCCTTCCGTTCTTCCGCGCCTTGTTCGTTTGT
CGGAATCCTTTGGGAGTGAACAATGATGAGCGAGGCTGCTCAGATGAGGT
GCATCAGCTTGCCGAGTGTTTCCAGCTTTGCGATAAAATTACATGAGGGA
TACGCATGCCAATGTAGGCGAGAAGAGCTGAGGGATGAGTGCAGAGCTGC
GTTGAGCCAAGCACGTGTCTCTGCGGAGCTTTCCTGCCTTCCGTTCTTCC
GCGCCTTGTTCGTTTGTCGGAATCCTTTGGGAGTGAACAATGATGAGCGA
GGCTGCTCAGATGAGGTGCATCAGCTTGCCGAGTGTTTCCAGGAGCACAT
AGGACCCTACGGTTTCAGCCACGAGGAGATCTGGCGGCTTCTCTTCGGGA
AGCAGCAGCCTGCCCCGAAACGCAAACCCTTTGTGGATGTCGCGAGGGAG
GGCGGCGTAGAAGTCAAAGGAAATAGAGAGATAGCGGGCGGAGGGACCGA
GGCGGGGGATATGATTGAAGGGGCAGGTAAAAAGGAAGCAAACCTTGGCA
ATGAGGTGCCTGAGAGAGGGGACAGGCCAAAAGTGGATGTAGAACAGGGG
CCAAAGGATGGAGCGGATAGAGGAAGATAGGAGCACATAGGACCCTACGG
TTTCAGCCACGAGGAGATCTGGCGGCTTCTCTTCGGGAAGCAGCAGCCTG
CCCCGAAACGCAAACCCTTTGTGGATGTCGCGAGGGAGGGCGGCGTAGAA
GTCAAAGGAAATAGAGAGATAGCGGGCGGAGGGACCGAGGCGGGGGATAT
GATTGAAGGGGCAGGTAAAAAGGAAGCAAACCTTGGCAATGAGGTGCCTG
AGAGAGGGGACAGGCCAAAAGTGGATGTAGAACAGGGGCCAAAGGATGGA
GCGGATAGAGGAAGATAG
back to top