mRNA_P-fluviatile_contig15.2566.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2566.1
Unique NamemRNA_P-fluviatile_contig15.2566.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2566.1 vs. uniprot
Match: D7FS10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS10_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 9.280e-16
Identity = 40/44 (90.91%), Postives = 42/44 (95.45%), Query Frame = 3 
Query:  264 VVAGDDPDPTRPSEKGSPGLREHCDESLLERSFALQFKERSLEV 395
            V+AGDDPDPTRPSEKGS  LREHCDESLLERSFALQFKERSLE+
Sbjct:  456 VIAGDDPDPTRPSEKGSAMLREHCDESLLERSFALQFKERSLEM 499
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS10_ECTSI9.280e-1690.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2387284..2387796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2566.1prot_P-fluviatile_contig15.2566.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2387284..2387628 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.6380029-CDS-P-fluviatile_contig15:2387283..23874161622815640.6380029-CDS-P-fluviatile_contig15:2387283..2387416Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2387284..2387416 -
1693562647.6016786-CDS-P-fluviatile_contig15:2387283..23874161693562647.6016786-CDS-P-fluviatile_contig15:2387283..2387416Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2387284..2387416 -
1622815640.6538014-CDS-P-fluviatile_contig15:2387533..23876281622815640.6538014-CDS-P-fluviatile_contig15:2387533..2387628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2387534..2387628 -
1693562647.6089983-CDS-P-fluviatile_contig15:2387533..23876281693562647.6089983-CDS-P-fluviatile_contig15:2387533..2387628Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2387534..2387628 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.6739957-UTR-P-fluviatile_contig15:2387628..23877961622815640.6739957-UTR-P-fluviatile_contig15:2387628..2387796Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2387629..2387796 -
1693562647.616414-UTR-P-fluviatile_contig15:2387628..23877961693562647.616414-UTR-P-fluviatile_contig15:2387628..2387796Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2387629..2387796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2566.1

>prot_P-fluviatile_contig15.2566.1 ID=prot_P-fluviatile_contig15.2566.1|Name=mRNA_P-fluviatile_contig15.2566.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=76bp
MRALPEIRSGSSRPGNHTQRSRSSPAPAGRVTLWPATIPTPRGRPKRARR
GSVSTATRACWSVVSPYSSRRDLWR*
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mRNA from alignment at P-fluviatile_contig15:2387284..2387796-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2566.1 ID=mRNA_P-fluviatile_contig15.2566.1|Name=mRNA_P-fluviatile_contig15.2566.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=513bp|location=Sequence derived from alignment at P-fluviatile_contig15:2387284..2387796- (Porterinema fluviatile SAG_2381)
TGTCGCGATGCGGGACGTAGAAACGGACAGATGAAGTTGGACAGTCAGTG
AACAGTAGATGATGACGCACGGCACCGGCGATGTTTCGCCGCGGAAGGGC
CTCTCGAAGCTCAACGTTGGCTATGACCAGAACGACAACAGGATTGTGTT
CGATCTCGATCAAGGTCCATGCGTGCGCTGCCGGAGATTCGTAGCGGAAG
CTCACGGCCTGGCAACCACACCCAGAGGTCTCGTTCCAGCCCTGCTCCTG
CCGGCCGCGTAACGTGAGCCCACGCGGGCAAGTCCGACATCAATCCGATT
GGTAGCGCGCGCCGTCCTCCCAGCTCAAAACGAAATACATGAAAAAACTT
GCTGCTTAACAAAAAAGCGTTCTGCCGCAGGTTGTGGCCGGCGACGATCC
CGACCCCACGAGGCCGTCCGAAAAGGGCTCGCCGGGGCTCCGTGAGCACT
GCGACGAGAGCCTGCTGGAGCGTAGTTTCGCCTTACAGTTCAAGGAGAGA
TCTCTGGAGGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2387284..2387796-

>mRNA_P-fluviatile_contig15.2566.1 ID=mRNA_P-fluviatile_contig15.2566.1|Name=mRNA_P-fluviatile_contig15.2566.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=456bp|location=Sequence derived from alignment at P-fluviatile_contig15:2387284..2387796- (Porterinema fluviatile SAG_2381)
ATGCGTGCGCTGCCGGAGATTCGTAGCGGAAGCTCACGGCCTGGCAACCA
CACCCAGAGGTCTCGTTCCAGCCCTGCTCCTGCCGGCCGCGTAACATGCG
TGCGCTGCCGGAGATTCGTAGCGGAAGCTCACGGCCTGGCAACCACACCC
AGAGGTCTCGTTCCAGCCCTGCTCCTGCCGGCCGCGTAACGTTGTGGCCG
GCGACGATCCCGACCCCACGAGGCCGTCCGAAAAGGGCTCGCCGGGGCTC
CGTGAGCACTGCGACGAGAGCCTGCTGGAGCGTAGTTTCGCCTTACAGTT
CAAGGAGAGATCTCTGGAGGTAGGTTGTGGCCGGCGACGATCCCGACCCC
ACGAGGCCGTCCGAAAAGGGCTCGCCGGGGCTCCGTGAGCACTGCGACGA
GAGCCTGCTGGAGCGTAGTTTCGCCTTACAGTTCAAGGAGAGATCTCTGG
AGGTAG
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