mRNA_P-fluviatile_contig15.2562.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2562.1
Unique NamemRNA_P-fluviatile_contig15.2562.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2562.1 vs. uniprot
Match: D7FS05_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS05_ECTSI)

HSP 1 Score: 246 bits (629), Expect = 1.780e-74
Identity = 164/209 (78.47%), Postives = 182/209 (87.08%), Query Frame = 1 
Query:    1 KVYGGYVTGIMGDEDNPLEERIQSVLEILCGAAEEETGLDDFRSSLKERWEVKVGLEEEQKEAARAAKHKEMEMKKXXXXXXXXXXXXXXXXXXXXXXXXXAEELAERARLLGEYGYDSDPVDEEGNPLPPEELGDGEGRTSAEDSLGEAYGKNLNKERVQQELAAKRDAIKKSHQATVLQNKIALEADKMRKEMAKNARKTTKGERKR 627
            +VYGGYVTGIMGDEDNP EERI+SV+EIL GAAEE+  L +FRS+L ERW++KV  EE++KEAA+AAK KEM+ KKXXXXXXXXXXXXXXXXXXXXXXXX AEE AERARLLGEYGYDSDPVDEEGNPLPPEE GDGEG +SA           LNKERV++E+AAKR+AIKK+H AT LQNKIALEADKMRKEMAKNARKTTKGERKR
Sbjct:   26 EVYGGYVTGIMGDEDNPQEERIESVIEILSGAAEEDNDLGEFRSALNERWDMKVEHEEKEKEAAKAAKQKEMDSKKXXXXXXXXXXXXXXXXXXXXXXXXSAEEQAERARLLGEYGYDSDPVDEEGNPLPPEEGGDGEGGSSAXXXXXXXXXXXLNKERVREEVAAKREAIKKTHHATALQNKIALEADKMRKEMAKNARKTTKGERKR 234
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BLAST of mRNA_P-fluviatile_contig15.2562.1 vs. uniprot
Match: A0A7S2WBQ4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBQ4_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.810e-11
Identity = 61/176 (34.66%), Postives = 87/176 (49.43%), Query Frame = 1 
Query:    1 KVYGGYVTGIMGDEDNPLEERIQSVLEILCGAAEEETGLDD-FRSSLKERWEVKVGLEEEQKEAARAAKHKEMEMKKXXXXXXXXXXXXXXXXXXXXXXXXXAEELAERARLLGEYGYDSDPVDEEGNPLPPEELGDGEGRTSAEDSLGEAYGKNLNKERVQQELAAKRDAIKKSH 525
            ++Y  YVTGI+ DE   +E R +SV++IL GA EE T L+D F S L  +WE +V  +     +  A K        X       XXX               EE  ER R+L +YG+ SD VDE+GN +           ++A+D +    G+N N+ RV++   AKR A + SH
Sbjct:   31 EIYSEYVTGILADESEDMEARAESVIDILSGALEEGTELEDTFASDLAAQWEARVSQQTSTAASDAAEKXXXXXXXXXRDLALAAXXXEQKRLQLAKQNEMTREERKERNRILDQYGFASDVVDEDGNVIASASASS----SAAQDDMS-GIGQNTNRTRVKEAEQAKRVAARASH 201
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FS05_ECTSI1.780e-7478.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WBQ4_9STRA2.810e-1134.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2345879..2350635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue3.8e-57
Seed eggNOG ortholog2880.D7FS05
EggNOG OGs29Y8F@1,2RXTG@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_006970.1
Exons5
Model size1795
Cds size600
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.6410007-UTR-P-fluviatile_contig15:2345878..23470431622815668.6410007-UTR-P-fluviatile_contig15:2345878..2347043Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2345879..2347043 -
1693562833.8996644-UTR-P-fluviatile_contig15:2345878..23470431693562833.8996644-UTR-P-fluviatile_contig15:2345878..2347043Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2345879..2347043 -
1622815668.7155507-UTR-P-fluviatile_contig15:2350605..23506351622815668.7155507-UTR-P-fluviatile_contig15:2350605..2350635Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2350606..2350635 -
1693562835.2413497-UTR-P-fluviatile_contig15:2350605..23506351693562835.2413497-UTR-P-fluviatile_contig15:2350605..2350635Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2350606..2350635 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815668.6541162-CDS-P-fluviatile_contig15:2347043..23471721622815668.6541162-CDS-P-fluviatile_contig15:2347043..2347172Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2347044..2347172 -
1693562833.9220035-CDS-P-fluviatile_contig15:2347043..23471721693562833.9220035-CDS-P-fluviatile_contig15:2347043..2347172Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2347044..2347172 -
1622815668.671302-CDS-P-fluviatile_contig15:2347820..23478951622815668.671302-CDS-P-fluviatile_contig15:2347820..2347895Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2347821..2347895 -
1693562835.1915843-CDS-P-fluviatile_contig15:2347820..23478951693562835.1915843-CDS-P-fluviatile_contig15:2347820..2347895Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2347821..2347895 -
1622815668.6820803-CDS-P-fluviatile_contig15:2348497..23486921622815668.6820803-CDS-P-fluviatile_contig15:2348497..2348692Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2348498..2348692 -
1693562835.2046692-CDS-P-fluviatile_contig15:2348497..23486921693562835.2046692-CDS-P-fluviatile_contig15:2348497..2348692Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2348498..2348692 -
1622815668.693336-CDS-P-fluviatile_contig15:2349753..23498791622815668.693336-CDS-P-fluviatile_contig15:2349753..2349879Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2349754..2349879 -
1693562835.2137344-CDS-P-fluviatile_contig15:2349753..23498791693562835.2137344-CDS-P-fluviatile_contig15:2349753..2349879Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2349754..2349879 -
1622815668.7029755-CDS-P-fluviatile_contig15:2350530..23506051622815668.7029755-CDS-P-fluviatile_contig15:2350530..2350605Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2350531..2350605 -
1693562835.2231371-CDS-P-fluviatile_contig15:2350530..23506051693562835.2231371-CDS-P-fluviatile_contig15:2350530..2350605Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2350531..2350605 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2562.1prot_P-fluviatile_contig15.2562.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2347044..2350605 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2562.1

>prot_P-fluviatile_contig15.2562.1 ID=prot_P-fluviatile_contig15.2562.1|Name=mRNA_P-fluviatile_contig15.2562.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=200bp
MGDEDNPLEERIQSVLEILCGAAEEETGLDDFRSSLKERWEVKVGLEEEQ
KEAARAAKHKEMEMKKEEERRLVEEADKERRAKAEKKGERSAEELAERAR
LLGEYGYDSDPVDEEGNPLPPEELGDGEGRTSAEDSLGEAYGKNLNKERV
QQELAAKRDAIKKSHQATVLQNKIALEADKMRKEMAKNARKTTKGERKR*
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mRNA from alignment at P-fluviatile_contig15:2345879..2350635-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2562.1 ID=mRNA_P-fluviatile_contig15.2562.1|Name=mRNA_P-fluviatile_contig15.2562.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=4757bp|location=Sequence derived from alignment at P-fluviatile_contig15:2345879..2350635- (Porterinema fluviatile SAG_2381)
AAGGTATACGGGGGTTACGTGACGGGAATCATGGGGGACGAGGACAACCC
GCTGGAGGAAAGAATACAGTCAGTCTTGGAGATTCTCTGCGGGGCCGCTG
AAGAGGTACGCGCCAAAATGTCGAGGATTTGATCGATTCGGCGTCGACGG
GTAGTGGACGCTCACGAAAACTTCGTGAACGTCGAGCTCTCGCGGCAAGA
CAAAGAGCGTATAGCGCCAGTTCGTTGTTTTGTGGCCAGCAGGCAGATGC
CACATTTGTGTGGTAATGTTTTGTGGTCCAATCGTTTTGAGTCATGGCGG
TTCCGCCGACTGTTGTAGGAGCCCGAGAGAAGGCGATGCTGCTTTGAGAC
ACGACACACCCGGTCATACAGGTCTGAGAGACGATGGACTCCACGGCGCA
GAACACGGGAACCAGCTTGCATCTTCCCGTGAGCTGCGACCAGCAGCACA
TTTTGTACGCTAGCTCCGCGAAGAAGGGTAAAGTAGAAACGCTCTGAACC
GGTCCTCAGTTTTTAGCACCTCCGAGGGTCGAAACTCGGTTGAAGAAGTC
ATCGGCGCCCTCCCGTCGATCGATCCCCTTGCTCGTGTCCTTACGCGCTT
TGATCTTGACCTACGCTATCAAATGCAATATTCACCTAAGAAAACGTGTT
CACCTCGGTCCAAGGCTCGTTGATGCCTCGATTTCCGCATCGTTTGCAGC
ATTGTCGGTTCTTCCGTCTTGCTTCTCATGTTGCTCATTGATTTTCGTTG
GGGCAGGAGACAGGCCTGGACGACTTCAGATCGTCGCTGAAGGAGAGGTG
GGAGGTCAAGGTGGGGCTTGAGGAAGAGCAGAAGGAAGCCGCCAGAGCCG
CCAAGCATAAGGAAATGGAGATGAAGAAAGAGGTGCGTTTGTGCGCAAGT
TTTGCACGAAATCTGTGTCTGTGGTTGTTTTTTCCGCGGTTCTACCGACT
TGAGGCATGGGATGCCAGTTTCATGTCATGTCAAGAGACTTGAAGCGTTC
ATTTCAGCGCCCCCCCCCGCTTTTTCCTGAGAAGGAACCGCGGTCGGGTG
CCAACAAAAGCTCCAGCTTACATGCGTGTGCACAATACGCATCCCAGAGA
AGCGAGGGGACCTAGCGTACATCGACGGAGTGATTGAGGTTTCATCGCCG
AACGACCAATACGTGGTAAGGTTTTGTCAAAAGTATCATAACCCCTGAAG
CGTATCCCCCCTCCACACGCACACCGAGCGAAAGCAACATGCTTGTAACC
CCCACTGCCTTGATGCGAAGCCATAATTTCCTCGCTGCGGTCGATCCTTG
TTTATGCAGATGGAAAGTAGCGCTCTGGGTGTTCGACGCCATAAATGTAT
GTATTCACCGCACCGGGTATATTTTTAATTTTGTTGAGATGTTCAACTCG
AAGCGTAAACCGAAGGTTCTGCCGGCGCCTCGAAACATGCAGACCGGGTC
GCAGCTTTCAGTCAGTGATCAAAATGGGCCGCTGCTTTTAAACTGGTAGC
GGGTTGGGCCTTCGGGAAAAAGTGGTGACGGATTAGACGGCAGTAGTCAT
CGCGCTGCGAATTAGGCGCTATTTCGCCTGTCCCGCAAAAAGAACAAAGC
ACGGAGGGATAACGGCGAACGGATGGATCTTGAAGTATGGATTTACCCCT
GTCGAAATCACGTCGCCATTCTATCTCCTCACGAATACACCACCGCCACC
ACCTACTGTAATTATGACAACAACAGCAGCAGCAACTACAACACTAAGAA
TAAGATCAGAGTAGAGCCCAGAGTAAATGGGACGGAAACGACACCCACAA
AGCACAAGTCAACGACGACGACGACAACGATGACGACGACCACAAAAACG
ACGACGACGACGACGACCAAAGCAACAACAACAACAACAACAACAACATC
AACAACAACAACAACAAGGGACCCATGCCATCCGTCAATACAGGAGGAGA
GACGACTGGTGGAGGAGGCGGACAAGGAGAGAAGAGCGAAGGCGGAGAAG
AAGGGCGAGAGGTCCGCTGAGGAGCTGGCCGAGCGGGCAAGGCTCCTCGG
CGAGTACGGCTACGACTCCGACCCCGTTGACGAGGAGGGGAACCCTCTGC
CTCCGGAGGAGTTGGGAGACGGGGAAGGCAGGACCTCGGTGAGAGACAAC
ATGAACTCGCGTTGAATGCGGACTAAGATTAACTGTCTTTTTACTGGACG
GCGGTCTCGAGAGTTGGGAGGAGGAAGGGTGATGAGTATCATGGGGGGGG
CGGGAGGCGTCAACCCGTCATGCCACGTGTTATTGATCAGCGCAACGCTT
GGAAGGGAATTTGATATTCGTACCCCGAGAGTTTGCATGGAGATCCATGG
AGAGGTGTCAGTATACCATGCAGCATGCGGAAGGAGGTTGGAACCAATGT
TCACACGTCTCGAGCACGATGGCGACCCATGTTGAGATAGGTATTCTGGT
GTCAGTTGGGGAGTGAGGGGTGCGGCGTGAACGCGTATAGCTATTGAGAG
CCGCAGTCGAGGGCGCTATCGTGTTTCCCGTGTAATCCTCCCCCTAGCAG
GCAATTTGCTCCTGTTTTATTTTCTTCTCCATGTCGCGGCTGCTCCGCTG
ATTGGCCAATGTCTTACGCTGTGACTGAAACAGAGGATGCCAGCGCGGCG
TGTATAATCTCACTCCACTTTGATGCGCTCTCAATGTATTGATTGCGATC
TCCGGCATCCGATGTCCGACCTGATCTGATCTGATTGCAGGCCGAGGACA
GCCTCGGGGAGGCATATGGCAAGAACCTGAACAAGGAGCGGGTCCAACAA
GAGCTCGCCGCAAAGGTTCGTCTGTTGTGTCGCCTTGTCGTTTTCTTTTG
TGTGTTGTGCGTGGTTAATGTTTTCATGAGGTCGCCGTGTCAGCCGCACG
AGCAGACCATGTTGGCAGGGTTGCACGATGTCACCCAGTGGATAATTTTT
GCCACGAGTCAAAAAGTACAGGACATGCGATGGTTTGTCGGAACACCTCC
CTGACGACTGCACGCGTCTTGTATTTGCTTTCGAGCTTGAAACGCACGGC
TGTAGCGTCGGCTTCGACCACCCTGCAATTTTGCTGGAAGAAACGAAAGG
CGACACGGAAATGAACTCAATCATCACATTACGACCGTGCCTCCAGTCTT
ATCCAGCTTGGTTGCTTCGATCTTGATCATGCGCCTCGCCCCCTTGGGCG
TCGTTCGCTGTTTTTCTCGTGCGGAAGCTCTTCCTACCCTCGTTTTTGAG
CTGCTGCTGTCTCTTTTTTCGCGGTTTTTGCGAAAAGAGTGTGCGGGCGC
CTGCCGCAGAGTGTCGGCCTTTGTTTTGTTTTGTTTTTTCAAACTTTATA
TCATCCTTTGTGACGCTGGCGATGTAGGCGATGATTTGATAAGTGTTGTG
GTTTCGTTCTACTCCTTACTATGTTTGGCGTCCCCCCTCCCCCCCCCCCT
CCTGCCCCACCAGCGAGACGCCATCAAGAAGTCCCACCAAGCCACCGTCC
TCCAGAACAAGATCGCGCTCGAGGCGGACAAAATGAGGAAGGAGATGGCC
AAGAACGCAAGAAAAACGACCAAGGGGGAGCGGAAACGATAGGATGACGG
GAATAATAGGCAAAAACCAACCTAAAGGCGAAGCGAGGTGAAAGGAGCGT
GCGGTTTGGACCGCCGCTGCTATCGTTTTAGAGGAGAGTACTTCTAGTGT
GTGCGTGGTGCACAGCGCTGGTGGAAGAGGTTTCTCTCGTTCAGTCTTGG
TGTTGACCTTGCGTGTATTGTCCGCGTGACGGCGGTAGAGGAAGGGGTGG
TGTGTGGTCGGGTAGGGGCTGGCCGCAAAGTCATCACAAAAAGTACCGTC
ATGGGTGCTGGCGTTTTTGTTGTCATTGTCGGCCCCAGTCTGCCGGGCAT
CGTTTAGCCTTACACGTGCACGTCCTGGATGCCCGGACGACAGACGTGAA
GTGCCTCAAGGGTAAATGCCAAGCCGTTTTCTGCTCGCTCCCTCGTTTGA
TTCTTTCCTTCACGTGACCTACCTGTTTGTGTGGAGCTGTGCCCAGCGGA
GGCCAGGAACATACTTCATGTTTCCCCCTCCTCCTTCTCCCGTCGTGTCT
CCCGTCTTTGCGTTCGCCGGGGGCCTCGTGGATGTGTTGGGTGTGGGTCG
TTATCAGATTGTAGATTGATTGTTTTTTGGTGTCACGTAGGCGCGTGTTG
AACGGTGGGCGGGGAGGCGGTGAGTGCGCAAGAGCGGGCATCGGGTGGCC
GCAGTATTATTGCTCCCAATTTTGTTGTTTTCGTGTGGCTGTGTGCTCTC
TCGTGTACGTGCCGACTCTTGTTTTGCGGCGATCGTGCCTGCCGTGATGG
CGCCACGAGTTTTCGTCTTATGCACGCACAGCGGCGGTTGGCGTGTCGCG
CCAGTGGATCGGTGCAAAGGTTCCCACTGGACGCTGACCTCGACGAGATA
ACACGAAAGTGATCAATGCGATGATCATGCTGGTGCTGATGCCTACGTAT
CGACTTACTGTCTCTCGCGAACACAACTTTAGGAGGACTACCACCGGCTC
TCAAGCGCAGAGGTGAACTCAAAGAGCTAGGGCTGCGTGGCGGGGTGCTG
TGTCCACGCGCCTCGTAGATTCGCAGGAGCCAAGTGTACTTGTTACGTCC
AGATGTTCTTGGAAGCTGGCTTGCGCGGCACACATGGAGCTTTCCCAGTG
TCATCCCTTTTCTCTTCGGCACGTATGCGGGATAGTAATGGAAGTATTTA
TGTGATC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2345879..2350635-

>mRNA_P-fluviatile_contig15.2562.1 ID=mRNA_P-fluviatile_contig15.2562.1|Name=mRNA_P-fluviatile_contig15.2562.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1200bp|location=Sequence derived from alignment at P-fluviatile_contig15:2345879..2350635- (Porterinema fluviatile SAG_2381)
ATGGGGGACGAGGACAACCCGCTGGAGGAAAGAATACAGTCAGTCTTGGA
GATTCTCTGCGGGGCCGCTGAAGAGATGGGGGACGAGGACAACCCGCTGG
AGGAAAGAATACAGTCAGTCTTGGAGATTCTCTGCGGGGCCGCTGAAGAG
GAGACAGGCCTGGACGACTTCAGATCGTCGCTGAAGGAGAGGTGGGAGGT
CAAGGTGGGGCTTGAGGAAGAGCAGAAGGAAGCCGCCAGAGCCGCCAAGC
ATAAGGAAATGGAGATGAAGAAAGAGGAGACAGGCCTGGACGACTTCAGA
TCGTCGCTGAAGGAGAGGTGGGAGGTCAAGGTGGGGCTTGAGGAAGAGCA
GAAGGAAGCCGCCAGAGCCGCCAAGCATAAGGAAATGGAGATGAAGAAAG
AGGAGGAGAGACGACTGGTGGAGGAGGCGGACAAGGAGAGAAGAGCGAAG
GCGGAGAAGAAGGGCGAGAGGTCCGCTGAGGAGCTGGCCGAGCGGGCAAG
GCTCCTCGGCGAGTACGGCTACGACTCCGACCCCGTTGACGAGGAGGGGA
ACCCTCTGCCTCCGGAGGAGTTGGGAGACGGGGAAGGCAGGACCTCGGAG
GAGAGACGACTGGTGGAGGAGGCGGACAAGGAGAGAAGAGCGAAGGCGGA
GAAGAAGGGCGAGAGGTCCGCTGAGGAGCTGGCCGAGCGGGCAAGGCTCC
TCGGCGAGTACGGCTACGACTCCGACCCCGTTGACGAGGAGGGGAACCCT
CTGCCTCCGGAGGAGTTGGGAGACGGGGAAGGCAGGACCTCGGCCGAGGA
CAGCCTCGGGGAGGCATATGGCAAGAACCTGAACAAGGAGCGGGTCCAAC
AAGAGCTCGCCGCAAAGGCCGAGGACAGCCTCGGGGAGGCATATGGCAAG
AACCTGAACAAGGAGCGGGTCCAACAAGAGCTCGCCGCAAAGCGAGACGC
CATCAAGAAGTCCCACCAAGCCACCGTCCTCCAGAACAAGATCGCGCTCG
AGGCGGACAAAATGAGGAAGGAGATGGCCAAGAACGCAAGAAAAACGACC
AAGGGGGAGCGGAAACGATAGCGAGACGCCATCAAGAAGTCCCACCAAGC
CACCGTCCTCCAGAACAAGATCGCGCTCGAGGCGGACAAAATGAGGAAGG
AGATGGCCAAGAACGCAAGAAAAACGACCAAGGGGGAGCGGAAACGATAG
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