mRNA_P-fluviatile_contig15.2559.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2559.1
Unique NamemRNA_P-fluviatile_contig15.2559.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2322123..2324276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size652
Cds size651
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2559.1prot_P-fluviatile_contig15.2559.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2322123..2324276 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815640.5727654-CDS-P-fluviatile_contig15:2322122..23223791622815640.5727654-CDS-P-fluviatile_contig15:2322122..2322379Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2322123..2322379 +
1693562647.5718117-CDS-P-fluviatile_contig15:2322122..23223791693562647.5718117-CDS-P-fluviatile_contig15:2322122..2322379Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2322123..2322379 +
1622815640.5876002-CDS-P-fluviatile_contig15:2323637..23238541622815640.5876002-CDS-P-fluviatile_contig15:2323637..2323854Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2323638..2323854 +
1693562647.5819056-CDS-P-fluviatile_contig15:2323637..23238541693562647.5819056-CDS-P-fluviatile_contig15:2323637..2323854Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2323638..2323854 +
1622815640.6006367-CDS-P-fluviatile_contig15:2324099..23242761622815640.6006367-CDS-P-fluviatile_contig15:2324099..2324276Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2324100..2324276 +
1693562647.59107-CDS-P-fluviatile_contig15:2324099..23242761693562647.59107-CDS-P-fluviatile_contig15:2324099..2324276Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2324100..2324276 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2559.1

>prot_P-fluviatile_contig15.2559.1 ID=prot_P-fluviatile_contig15.2559.1|Name=mRNA_P-fluviatile_contig15.2559.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=217bp
PAQGGFRLLPLYRLPPFIVNKYEHIHAHTQWCISPHPTDKCPLAFNFSYR
HTLFSCSRGGTSKSDMKVVAQSARVLDGNTEEKTMSLQEAVHKQVERWVV
QLLVLKNGAVRFNEGGRRGRGSQSDYGRRPSRRSGRPWVVPGYHGPVAAP
DRGGLRVVEKGCSLLDRRCYLRYKRCSLHPHAAPFAPRLGNPHDKTGTCN
GEIELVDDDDDDDDDQ*
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mRNA from alignment at P-fluviatile_contig15:2322123..2324276+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2559.1 ID=mRNA_P-fluviatile_contig15.2559.1|Name=mRNA_P-fluviatile_contig15.2559.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2154bp|location=Sequence derived from alignment at P-fluviatile_contig15:2322123..2324276+ (Porterinema fluviatile SAG_2381)
CCAGCTCAAGGAGGTTTTCGGTTGCTACCGCTGTACCGGCTGCCGCCTTT
CATTGTTAACAAGTACGAACATATACATGCGCACACCCAGTGGTGCATTT
CCCCCCACCCGACCGACAAGTGCCCCTTGGCGTTTAATTTCAGTTACCGT
CATACTTTGTTCTCTTGCTCTAGAGGTGGAACGAGCAAATCGGACATGAA
GGTCGTCGCCCAGAGTGCTCGGGTTTTGGACGGAAACACGGAGGAGAAGA
CGATGAGGCAAGAGAGAGAGGAAGGGGGGGGGGCAAGATAGAGGGACAGA
ACGAGAAACTGGTATAGTGCGACCTCAAACAAATGACGTCTGCTCGCGTG
ACGTGTGTGAGGCTCGGAGCTTCGAAGAGGGTCTCATGGAGTATCGACGG
TAGACCATACCTCACTTGTTCACCGATCAACAGCATGTGTGAGAGAGGGG
CTCTCACCAAAAGTTTTTCACCTCTTCACCCCTCCCCCCCCCTTTGAAAT
GCGACAAAGTGGCCGATACCCCTGCCTCCCCCTGCCTTACTCCGTGCGCT
GTTCGACGCTGCTCATCTGCCTACCCCGTCCCTTTCGACTCGACGCCTGT
ATGAGCCGTAGAGTACTGGAGTTGATCCGCTCAACTACGGGTTCAAACGC
CTCCGCACGGGCACGCCTATTACCCTCTCGTATGCGGTTGGACTGTGTGT
CTCTGTGCGTTTCCTCGCGTCGAGGGTGATGAAGAAACTGTTGTGTGCAA
CCCGCTCGGATTTCACTTAGACAAATGCCCGTCGATGTGGCGGAGATCTA
CCGTCAAAGCCCTGGGTGCTCCGAAGAGTTCGTCGTCGTAGATTGGGGCG
GCTTGGGCTCGGAGAGCGTGCCAGCACTGAGGTACGCAGAAGGAAACCTC
TCTGGGATAAGAACGCGTGGGTTTTGATGTTGACAGCTGTCGTGGCCTCA
CCGCACGGCCCCAGGGGGGCCGAGGGGGGAGGGTTTGCCTTTTCCCCGCT
CCGTGGCCCTATTCAAACTACTGATCCCCTGTCTCCGAGACATGATCTGC
CCCTCTACGTGCAGAGCCATCACGGAGGGGGAGGTGGACAGAATTAGACC
CTCTGCCTGGTTGTGTGTCGTCTTGTGGGAATTCCAACGTGGCAGAAATT
GACGTGGGATTACCGGGTCATAACATCCCCCTGCCCCTCTGGTCAAGCGA
CAGGGTACGACCTTTAACGACACCCTGTTTCGAAAGCACAGAATAGATCG
TCCCCTCTCGTGCGCGACAGATAGCCGGTGAGCCTGGGGATGCCCGGCCC
CGATTCAAGTACGCATGGATGTATTCTTGCTGGCCTCGCGGTATACTGCC
ACCCTCACCAATCTCATGTTGCGATGTTTCAACGTGATTGATGTTGTACT
CTGCCGTTTAAGGGTGCACGAAACCCTTTGTCGCCCAACCATTTGCGCCG
CCCCTCGCCTCTCTTACCCTTCGTCATCACCCTTCGTCATCACCCGCCCC
CGCCGACGAGACCAGCTTGCAGGAGGCCGTCCACAAGCAGGTCGAGCGCT
GGGTGGTGCAGCTTCTCGTGCTGAAAAACGGTGCCGTGAGATTCAACGAA
GGAGGACGGCGAGGACGAGGAAGTCAGAGCGACTACGGGCGGCGGCCGTC
GAGACGATCTGGAAGACCCTGGGTTGTCCCGGGATACCACGGCCCCGTCG
CAGCGCCGGACCGAGGAGGGCTGCGAGTAGTGGTGAATTATTTAAACCAC
GTATTGTGTGCCTGTGCGTGTGCTTGTTTTCCACTTGAGATCGAGTGCCT
TCCTTGCCTTAAAAAACCGAGTGAGAGCGAGCAACAACCACGTCGCGGTT
GTTTGCGATGTATGTTTAATATGCTATTGTTGAGCATTGTTCACCCGTAC
CCCCGTATTTCGGTGTCTGATGATATTGTCGCTCCCCCCCCCTCCCCTCA
CGACACGGCGCATGTTGCTATCTCCAGGAAAAAGGCTGCTCCCTGCTGGA
CAGGCGCTGCTACCTGCGATACAAGCGTTGCTCTCTGCACCCTCACGCAG
CACCGTTCGCCCCGCGGTTGGGGAACCCCCACGACAAGACTGGCACGTGC
AACGGCGAGATCGAATTGGTTGACGACGACGATGACGACGACGACGACCA
GTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2322123..2324276+

>mRNA_P-fluviatile_contig15.2559.1 ID=mRNA_P-fluviatile_contig15.2559.1|Name=mRNA_P-fluviatile_contig15.2559.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1302bp|location=Sequence derived from alignment at P-fluviatile_contig15:2322123..2324276+ (Porterinema fluviatile SAG_2381)
CCAGCTCAAGGAGGTTTTCGGTTGCTACCGCTGTACCGGCTGCCGCCTTT
CATTGTTAACAAGTACGAACATATACATGCGCACACCCAGTGGTGCATTT
CCCCCCACCCGACCGACAAGTGCCCCTTGGCGTTTAATTTCAGTTACCGT
CATACTTTGTTCTCTTGCTCTAGAGGTGGAACGAGCAAATCGGACATGAA
GGTCGTCGCCCAGAGTGCTCGGGTTTTGGACGGAAACACGGAGGAGAAGA
CGATGAGCCAGCTCAAGGAGGTTTTCGGTTGCTACCGCTGTACCGGCTGC
CGCCTTTCATTGTTAACAAGTACGAACATATACATGCGCACACCCAGTGG
TGCATTTCCCCCCACCCGACCGACAAGTGCCCCTTGGCGTTTAATTTCAG
TTACCGTCATACTTTGTTCTCTTGCTCTAGAGGTGGAACGAGCAAATCGG
ACATGAAGGTCGTCGCCCAGAGTGCTCGGGTTTTGGACGGAAACACGGAG
GAGAAGACGATGAGCTTGCAGGAGGCCGTCCACAAGCAGGTCGAGCGCTG
GGTGGTGCAGCTTCTCGTGCTGAAAAACGGTGCCGTGAGATTCAACGAAG
GAGGACGGCGAGGACGAGGAAGTCAGAGCGACTACGGGCGGCGGCCGTCG
AGACGATCTGGAAGACCCTGGGTTGTCCCGGGATACCACGGCCCCGTCGC
AGCGCCGGACCGAGGAGGGCTGCGAGTAGTGCTTGCAGGAGGCCGTCCAC
AAGCAGGTCGAGCGCTGGGTGGTGCAGCTTCTCGTGCTGAAAAACGGTGC
CGTGAGATTCAACGAAGGAGGACGGCGAGGACGAGGAAGTCAGAGCGACT
ACGGGCGGCGGCCGTCGAGACGATCTGGAAGACCCTGGGTTGTCCCGGGA
TACCACGGCCCCGTCGCAGCGCCGGACCGAGGAGGGCTGCGAGTAGTGGA
AAAAGGCTGCTCCCTGCTGGACAGGCGCTGCTACCTGCGATACAAGCGTT
GCTCTCTGCACCCTCACGCAGCACCGTTCGCCCCGCGGTTGGGGAACCCC
CACGACAAGACTGGCACGTGCAACGGCGAGATCGAATTGGTTGACGACGA
CGATGACGACGACGACGACCAGTGAGAAAAAGGCTGCTCCCTGCTGGACA
GGCGCTGCTACCTGCGATACAAGCGTTGCTCTCTGCACCCTCACGCAGCA
CCGTTCGCCCCGCGGTTGGGGAACCCCCACGACAAGACTGGCACGTGCAA
CGGCGAGATCGAATTGGTTGACGACGACGATGACGACGACGACGACCAGT
GA
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