mRNA_P-fluviatile_contig15.2539.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2539.1
Unique NamemRNA_P-fluviatile_contig15.2539.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2539.1 vs. uniprot
Match: D7G050_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G050_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 9.200e-8
Identity = 57/132 (43.18%), Postives = 68/132 (51.52%), Query Frame = 1 
Query:  472 SQAAAEAWEAAETWATAVALATETVAIGRGSFDAVAAADGGGVSEAE---AGD---QTAGLSVSNIAELDNRLRQDRGATEGVALNSRHCCRRCRSSISGDFAAATGICQSTVHRRDSVL-PCSSSAPAAPR 846
            S+AA EAWEAAETWA+AVA AT  VA G          DG  V  AE   AG    +T          ++   R  R   EG     +   RR   S++G   +A G+CQ  VHRRDSVL PC SS+ AAPR
Sbjct:  121 SRAAIEAWEAAETWASAVAAATGAVAGG---------GDGASVQTAEETFAGRTDRETTRQGGRRTTPMEPGRRCCRAVDEGRPERHQSNARRRCCSLAG---SAAGVCQRAVHRRDSVLLPCGSSSTAAPR 240
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BLAST of mRNA_P-fluviatile_contig15.2539.1 vs. uniprot
Match: A0A6H5JMA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA0_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.490e-7
Identity = 58/129 (44.96%), Postives = 72/129 (55.81%), Query Frame = 1 
Query:  472 SQAAAEAWEAAETWATAVALATETVAIGRGSFDAVAAADG--GGVSEAEAGDQTAGLSVSNIAELDNRLRQ-DRGATEGVALNSRHCCRRCRSSISGDFAAATGICQSTVHRRDSVL-PCSSSAPAAPR 846
            S+AA EAWEAAETWA+AVA AT  VA G G+  +V   +G   G ++ E   +    S     E     R  D G  E    N+R   RRC  S++G   +A G+CQ  VHR DSVL PC SS+ AAPR
Sbjct:  121 SRAAIEAWEAAETWASAVAAATGAVA-GGGNGASVQTPEGTFAGSTDKETARRGGRKSTPMKPERRCSCRTVDEGRPERRQSNAR---RRC-CSLAG---SAAGVCQGAVHRWDSVLLPCGSSSTAAPR 241
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G050_ECTSI9.200e-843.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMA0_9PHAE2.490e-744.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2162573..2163551 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size981
Cds size978
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.317804-CDS-P-fluviatile_contig15:2162572..21635501622815642.317804-CDS-P-fluviatile_contig15:2162572..2163550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2162573..2163550 +
1693562652.1269872-CDS-P-fluviatile_contig15:2162572..21635501693562652.1269872-CDS-P-fluviatile_contig15:2162572..2163550Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2162573..2163550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2539.1prot_P-fluviatile_contig15.2539.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2162573..2163550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2539.1

>prot_P-fluviatile_contig15.2539.1 ID=prot_P-fluviatile_contig15.2539.1|Name=mRNA_P-fluviatile_contig15.2539.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=326bp
RTTGSGRPLPRGEGGGGGGGGACHTESAAASTSVPSACSSCCCRHRQRRE
GQGITSAETTDSSARGGRTRDCSARTSSKAGNDDANSLHSHLRPLGACFH
RCDGRTDAGGDCGGDSTHGDRATVPAVVAAEDAIVVAAAADGGASICDKP
GGGGGPCSQAAAEAWEAAETWATAVALATETVAIGRGSFDAVAAADGGGV
SEAEAGDQTAGLSVSNIAELDNRLRQDRGATEGVALNSRHCCRRCRSSIS
GDFAAATGICQSTVHRRDSVLPCSSSAPAAPREVCRSTFRRRDSTLCGSS
DDQPLDYTLRYGGGWGRVPAWNGTKD
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mRNA from alignment at P-fluviatile_contig15:2162573..2163551+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2539.1 ID=mRNA_P-fluviatile_contig15.2539.1|Name=mRNA_P-fluviatile_contig15.2539.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=979bp|location=Sequence derived from alignment at P-fluviatile_contig15:2162573..2163551+ (Porterinema fluviatile SAG_2381)
CGGACAACTGGCAGTGGCCGCCCTCTGCCAAGAGGGGAAGGAGGTGGAGG
AGGAGGAGGAGGAGCGTGCCACACGGAGAGTGCTGCCGCTTCTACGTCCG
TTCCAAGCGCGTGCTCGTCTTGCTGCTGCCGCCATCGGCAAAGGCGGGAG
GGTCAAGGCATCACCAGCGCCGAGACGACGGACAGCAGCGCCCGCGGTGG
TCGGACACGAGACTGCAGCGCCCGTACCTCCTCCAAAGCAGGCAATGACG
ACGCGAACTCCCTGCACTCGCACCTCCGCCCTCTCGGCGCGTGTTTTCAC
CGGTGCGATGGCAGAACCGACGCCGGTGGAGACTGCGGTGGAGATTCGAC
CCATGGGGACCGTGCGACGGTCCCTGCTGTAGTGGCAGCTGAGGACGCGA
TCGTCGTTGCTGCTGCTGCCGACGGCGGTGCCAGCATTTGCGACAAGCCT
GGCGGAGGCGGTGGGCCTTGCTCTCAGGCGGCGGCCGAGGCTTGGGAGGC
CGCCGAAACGTGGGCCACGGCTGTGGCGCTTGCGACTGAAACGGTAGCGA
TTGGGCGGGGGAGTTTTGATGCCGTAGCTGCGGCGGACGGTGGTGGCGTC
AGCGAGGCGGAGGCAGGCGACCAAACGGCGGGACTGAGTGTGTCAAATAT
TGCAGAACTTGACAACCGTCTTCGGCAAGATCGCGGTGCCACGGAGGGAG
TGGCGCTCAACTCGCGCCACTGTTGCCGCCGCTGCCGCTCCTCGATTTCG
GGAGATTTCGCCGCGGCGACGGGGATCTGCCAGAGCACGGTTCACCGGCG
CGACAGCGTGCTGCCCTGCAGCAGCTCCGCCCCCGCTGCTCCGCGGGAAG
TCTGCCGCAGCACTTTTCGCCGGCGGGACAGCACCCTTTGCGGCAGTTCA
GATGATCAACCCCTGGATTACACCCTTCGGTACGGCGGTGGATGGGGCCG
TGTTCCTGCTTGGAATGGTACGAAAGATT
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2162573..2163551+

>mRNA_P-fluviatile_contig15.2539.1 ID=mRNA_P-fluviatile_contig15.2539.1|Name=mRNA_P-fluviatile_contig15.2539.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1956bp|location=Sequence derived from alignment at P-fluviatile_contig15:2162573..2163551+ (Porterinema fluviatile SAG_2381)
CGGACAACTGGCAGTGGCCGCCCTCTGCCAAGAGGGGAAGGAGGTGGAGG
AGGAGGAGGAGGAGCGTGCCACACGGAGAGTGCTGCCGCTTCTACGTCCG
TTCCAAGCGCGTGCTCGTCTTGCTGCTGCCGCCATCGGCAAAGGCGGGAG
GGTCAAGGCATCACCAGCGCCGAGACGACGGACAGCAGCGCCCGCGGTGG
TCGGACACGAGACTGCAGCGCCCGTACCTCCTCCAAAGCAGGCAATGACG
ACGCGAACTCCCTGCACTCGCACCTCCGCCCTCTCGGCGCGTGTTTTCAC
CGGTGCGATGGCAGAACCGACGCCGGTGGAGACTGCGGTGGAGATTCGAC
CCATGGGGACCGTGCGACGGTCCCTGCTGTAGTGGCAGCTGAGGACGCGA
TCGTCGTTGCTGCTGCTGCCGACGGCGGTGCCAGCATTTGCGACAAGCCT
GGCGGAGGCGGTGGGCCTTGCTCTCAGGCGGCGGCCGAGGCTTGGGAGGC
CGCCGAAACGTGGGCCACGGCTGTGGCGCTTGCGACTGAAACGGTAGCGA
TTGGGCGGGGGAGTTTTGATGCCGTAGCTGCGGCGGACGGTGGTGGCGTC
AGCGAGGCGGAGGCAGGCGACCAAACGGCGGGACTGAGTGTGTCAAATAT
TGCAGAACTTGACAACCGTCTTCGGCAAGATCGCGGTGCCACGGAGGGAG
TGGCGCTCAACTCGCGCCACTGTTGCCGCCGCTGCCGCTCCTCGATTTCG
GGAGATTTCGCCGCGGCGACGGGGATCTGCCAGAGCACGGTTCACCGGCG
CGACAGCGTGCTGCCCTGCAGCAGCTCCGCCCCCGCTGCTCCGCGGGAAG
TCTGCCGCAGCACTTTTCGCCGGCGGGACAGCACCCTTTGCGGCAGTTCA
GATGATCAACCCCTGGATTACACCCTTCGGTACGGCGGTGGATGGGGCCG
TGTTCCTGCTTGGAATGGTACGAAAGATCGGACAACTGGCAGTGGCCGCC
CTCTGCCAAGAGGGGAAGGAGGTGGAGGAGGAGGAGGAGGAGCGTGCCAC
ACGGAGAGTGCTGCCGCTTCTACGTCCGTTCCAAGCGCGTGCTCGTCTTG
CTGCTGCCGCCATCGGCAAAGGCGGGAGGGTCAAGGCATCACCAGCGCCG
AGACGACGGACAGCAGCGCCCGCGGTGGTCGGACACGAGACTGCAGCGCC
CGTACCTCCTCCAAAGCAGGCAATGACGACGCGAACTCCCTGCACTCGCA
CCTCCGCCCTCTCGGCGCGTGTTTTCACCGGTGCGATGGCAGAACCGACG
CCGGTGGAGACTGCGGTGGAGATTCGACCCATGGGGACCGTGCGACGGTC
CCTGCTGTAGTGGCAGCTGAGGACGCGATCGTCGTTGCTGCTGCTGCCGA
CGGCGGTGCCAGCATTTGCGACAAGCCTGGCGGAGGCGGTGGGCCTTGCT
CTCAGGCGGCGGCCGAGGCTTGGGAGGCCGCCGAAACGTGGGCCACGGCT
GTGGCGCTTGCGACTGAAACGGTAGCGATTGGGCGGGGGAGTTTTGATGC
CGTAGCTGCGGCGGACGGTGGTGGCGTCAGCGAGGCGGAGGCAGGCGACC
AAACGGCGGGACTGAGTGTGTCAAATATTGCAGAACTTGACAACCGTCTT
CGGCAAGATCGCGGTGCCACGGAGGGAGTGGCGCTCAACTCGCGCCACTG
TTGCCGCCGCTGCCGCTCCTCGATTTCGGGAGATTTCGCCGCGGCGACGG
GGATCTGCCAGAGCACGGTTCACCGGCGCGACAGCGTGCTGCCCTGCAGC
AGCTCCGCCCCCGCTGCTCCGCGGGAAGTCTGCCGCAGCACTTTTCGCCG
GCGGGACAGCACCCTTTGCGGCAGTTCAGATGATCAACCCCTGGATTACA
CCCTTCGGTACGGCGGTGGATGGGGCCGTGTTCCTGCTTGGAATGGTACG
AAAGAT
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