mRNA_P-fluviatile_contig15.2526.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2526.1
Unique NamemRNA_P-fluviatile_contig15.2526.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2526.1 vs. uniprot
Match: D7FV59_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FV59_ECTSI)

HSP 1 Score: 584 bits (1505), Expect = 4.990e-201
Identity = 331/489 (67.69%), Postives = 373/489 (76.28%), Query Frame = 1 
Query:  145 MRTLIAFLGARAEHLASLQYVLPHLLTVADGDKDEWVQVVSGLVRQKLLPGKGGDSSNDGEDPTATQSDFVLRKTVREVLQRAKQHMSERFAGRG-----------GDAESRHTWAAPYFGPLEERYVSRKQQPGQQDFVNTHFSVKYDFVSEFSEDLAPNVGSASNASSSPXXXXXXXXXXXX-SRAGQSGLLKLPGPSIPQVTPATPNLAQSRRVSLAAVVDPSAGSDGLRRTSKPMALSRNQAGLQSGAARGTPGVGSVRSVRGGGGGAGSKAGLMMINVDELQAIHGEKPSAREKAKGKPGRKKARIHGDDEDAAIGTDPSFEATAAGHRQPLHN--------GQQPQRATSEGEAIVEPKAQAKPSASMEGPKSIPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALATLLKDANSLRPEGKAKLESFFQKKTPERSLQERIKYHEEVKPGAEGEMMRITSYIRLDYKTWVWEKVHKMKRVKS 1551
            M+ LIAFLGAR EHLASL +VLP LL +AD DKDEWVQVVSGLVRQKLLP    DS++ G++   +QSDFVLRKTVREVL+RAKQ+MSER AG G           G+ ++R    APYFGPLEERYVSRKQQP +Q+F N HFSVKYDFV EFSEDLA NVG  SN SSSP             SR GQ GLLK PG   P  TPA PNLAQ+RRVSLAAVVDPSAGSDGLRRTSKP+ALSRN  GLQ G+ R + GVG  R  RGGGG +  KAGLMMINVDELQAIH EK SAREKAKGKPGRKKA++ G  E +  G +P   A+A G +Q + N        GQ P+ A+ EG+   +PKA AKPSA+ +GP  +PQQGEIEAVAAMMVLGVAGGGEDAETSYLPEAL  LL++ANSLRPEGKAKLESFFQKK PE S QER+KYHEEV PGA+GEMMR+TSYIRLDY+TWVW++VHK KRVKS
Sbjct:    1 MKALIAFLGARKEHLASLNHVLPSLLGMADSDKDEWVQVVSGLVRQKLLPRDEDDSTSVGDEAKTSQSDFVLRKTVREVLERAKQNMSER-AGNGKQRVVGGSTIGGNRDTRRMREAPYFGPLEERYVSRKQQPRKQEFANAHFSVKYDFVGEFSEDLASNVGGTSNTSSSPTGGGASVAAAALASRVGQGGLLKTPGSFAPAPTPAAPNLAQARRVSLAAVVDPSAGSDGLRRTSKPLALSRNYVGLQHGSGRTSSGVGGARGTRGGGGASPGKAGLMMINVDELQAIHAEKQSAREKAKGKPGRKKAKLEGGGEQSTAGMEPGTGASATGTQQVVANATDVGNTDGQLPEGASGEGKK-AKPKAPAKPSATADGPMPVPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALTKLLENANSLRPEGKAKLESFFQKKMPEGSQQERVKYHEEVSPGADGEMMRVTSYIRLDYETWVWDRVHKKKRVKS 487
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2526.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FV59_ECTSI4.990e-20167.69Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2054310..2057506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue6.5e-08
Seed eggNOG ortholog115417.EPrPW00000014930
EggNOG free text desc.negative regulation of transcription elongation from RNA polymerase II promoter
EggNOG OGs1MHDA@121069,2CEBP@1,2R19Q@2759
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_007450.1
Exons2
Model size2100
Cds size1554
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2526.1prot_P-fluviatile_contig15.2526.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2054310..2056960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.622823-CDS-P-fluviatile_contig15:2054309..20544531622815664.622823-CDS-P-fluviatile_contig15:2054309..2054453Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2054310..2054453 +
1693562812.5026462-CDS-P-fluviatile_contig15:2054309..20544531693562812.5026462-CDS-P-fluviatile_contig15:2054309..2054453Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2054310..2054453 +
1622815664.6381574-CDS-P-fluviatile_contig15:2055550..20569601622815664.6381574-CDS-P-fluviatile_contig15:2055550..2056960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2055551..2056960 +
1693562813.1761787-CDS-P-fluviatile_contig15:2055550..20569601693562813.1761787-CDS-P-fluviatile_contig15:2055550..2056960Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2055551..2056960 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815664.6513464-UTR-P-fluviatile_contig15:2056960..20575061622815664.6513464-UTR-P-fluviatile_contig15:2056960..2057506Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2056961..2057506 +
1693562813.1902187-UTR-P-fluviatile_contig15:2056960..20575061693562813.1902187-UTR-P-fluviatile_contig15:2056960..2057506Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2056961..2057506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2526.1

>prot_P-fluviatile_contig15.2526.1 ID=prot_P-fluviatile_contig15.2526.1|Name=mRNA_P-fluviatile_contig15.2526.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=518bp
MPTPSHIRAFELRLRTNWSSEDVVQMLTPEFVESVLLQGFTALEPRIKMR
TLIAFLGARAEHLASLQYVLPHLLTVADGDKDEWVQVVSGLVRQKLLPGK
GGDSSNDGEDPTATQSDFVLRKTVREVLQRAKQHMSERFAGRGGDAESRH
TWAAPYFGPLEERYVSRKQQPGQQDFVNTHFSVKYDFVSEFSEDLAPNVG
SASNASSSPTGGSASAAAALASRAGQSGLLKLPGPSIPQVTPATPNLAQS
RRVSLAAVVDPSAGSDGLRRTSKPMALSRNQAGLQSGAARGTPGVGSVRS
VRGGGGGAGSKAGLMMINVDELQAIHGEKPSAREKAKGKPGRKKARIHGD
DEDAAIGTDPSFEATAAGHRQPLHNGQQPQRATSEGEAIVEPKAQAKPSA
SMEGPKSIPQQGEIEAVAAMMVLGVAGGGEDAETSYLPEALATLLKDANS
LRPEGKAKLESFFQKKTPERSLQERIKYHEEVKPGAEGEMMRITSYIRLD
YKTWVWEKVHKMKRVKS*
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mRNA from alignment at P-fluviatile_contig15:2054310..2057506+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2526.1 ID=mRNA_P-fluviatile_contig15.2526.1|Name=mRNA_P-fluviatile_contig15.2526.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=3197bp|location=Sequence derived from alignment at P-fluviatile_contig15:2054310..2057506+ (Porterinema fluviatile SAG_2381)
ATGCCAACTCCAAGTCATATCCGTGCGTTCGAGTTGAGACTCAGGACAAA
CTGGAGCAGCGAAGATGTTGTGCAAATGCTCACGCCGGAGTTCGTGGAGT
CTGTGTTGCTCCAGGGTTTCACCGCTTTGGAACCGAGGATCAAGGTATGA
ACATGAAACAGACCAGTTTTCTCTCGCCAGTCTTGTGTGTCGCCAAAGGC
GGTGCACGTATAACCTTTCAAAGACTCTTGATAATGAAGTTGCGGGACTC
CAAATGCAGTAGCTGCGTAAGGCTGATCATCTCAGCGTGGAAGGGACGGG
TACCTTAGTTTCACAACTGCTCCTTCGTTGTGCTGTTCCGACGAGAGACC
TTTCGTCGGACTGTCCGCTGACAGGTGTTGCTGTCTCACTGCCGGAGTTG
TTAGCATCGTATGAACCACTCTATGTACAGCAGCGTTTTCGACTATACAA
TAGAGCTTTCTTTCTGCTAGAGACGGCAGTCAGAAAATATGCAACTGTAT
TCCATTTGTGTGGTGAGAAAACGCCAGTATTAAACGTCAATCTCATTCCC
TCTCCCTTCCCTTTCTCGCTCTCCGCACCCTGCCCCACCCTGTTTTCTGC
GTTGTCTGCGGATTCGCTCACAACAACCTTGGGGGGCTGTTGAGAAAGTG
TTGATGACGTGTAAAAATCAAGGTTTTGCACACGAAGCATTAGTTCTACG
TCGACAAGAGCTTTGAATGCTTTGGCATCTCATCACAGTCTCCTGTTCAG
TTTGTCAATCTCTGAAATGTCATACTCCGTACTTTCTATTGAAAATTCAG
ACAAGCGGTGCACAGTTCACCTCGCCCGGTGTGTCCGTGTTTCGCTTCTT
TCCGGATATTTTTGATGTATCCAAAGCGTGCACTTCTGGATTCTTCTCGC
AGAAGAAAAGCAAGGTTCTGCGCTCCACTTTTGTGGTGTCGTACCGGTGA
TCTCCCGCACAATGAGAAGTTTGCGTGTTGTACCGCATGAATCCCTATGA
GGACACTCCTCAGGACCGTTTGTATCAAACCTCGTGGGCGATTTCTTATT
CAAGAAGAGTATAATGGCAATGGTCGTGTGCTTGGAGCCAACATCTCTGT
TGGGCCTCTCTCAACTAACCTTTCATGTCGTTGGTGAGGGCGTAATCCGG
TCACTCCGCAACACCCGATTCACGAGCGATGCCCTAATCGCCAACGTCCT
GACACCCCCCGTCCGTCCCCTTGCTGCATCGGTATCAGCAGATGAGGACG
CTCATTGCCTTCCTCGGGGCTCGAGCTGAGCATCTTGCGTCTCTTCAATA
TGTTCTCCCCCACCTTTTGACGGTCGCGGACGGTGATAAAGACGAGTGGG
TGCAGGTAGTGTCCGGCCTTGTGCGTCAGAAGCTCTTGCCGGGCAAAGGA
GGTGATTCATCCAACGACGGCGAAGACCCAACGGCCACGCAGAGTGATTT
TGTTCTGCGTAAGACTGTCCGGGAAGTTCTCCAGCGGGCAAAACAGCACA
TGTCGGAGAGGTTCGCGGGCCGCGGCGGCGATGCCGAAAGCCGACATACG
TGGGCGGCTCCTTATTTTGGCCCTTTGGAGGAAAGATACGTCAGCCGTAA
ACAGCAGCCTGGCCAGCAAGACTTCGTCAACACGCACTTTAGCGTTAAAT
ATGACTTCGTCAGCGAGTTCTCAGAAGACCTTGCTCCCAACGTGGGTAGC
GCTTCCAACGCTTCTTCGTCTCCCACTGGAGGGAGCGCCTCTGCCGCTGC
TGCGCTCGCGTCAAGAGCTGGTCAGAGCGGATTACTGAAATTGCCGGGGC
CTTCCATCCCTCAGGTCACTCCGGCAACACCGAACCTGGCACAATCGCGC
AGGGTCTCCCTTGCTGCGGTTGTAGACCCATCCGCAGGATCGGACGGCCT
TCGGAGGACTAGCAAGCCCATGGCGCTATCACGGAATCAAGCTGGACTCC
AATCCGGAGCGGCGCGGGGCACGCCGGGTGTCGGCAGCGTGCGAAGCGTG
CGGGGAGGGGGCGGCGGCGCTGGAAGTAAAGCAGGGTTAATGATGATCAA
CGTGGACGAGCTTCAGGCAATACATGGTGAAAAGCCGTCTGCGAGAGAAA
AGGCGAAAGGCAAACCCGGCAGGAAGAAGGCTAGGATCCACGGAGATGAT
GAGGATGCGGCGATTGGCACTGATCCTTCGTTCGAGGCTACGGCTGCAGG
GCATCGACAACCCCTTCATAATGGGCAGCAGCCGCAGAGGGCAACTAGCG
AGGGGGAAGCAATTGTTGAGCCAAAAGCACAAGCAAAACCTTCGGCCTCG
ATGGAGGGGCCGAAGAGCATCCCACAGCAGGGCGAGATTGAGGCAGTCGC
GGCGATGATGGTTCTAGGGGTCGCAGGCGGGGGCGAGGATGCGGAGACTT
CATACCTTCCAGAGGCGCTGGCGACGCTCTTGAAAGATGCCAACTCGCTC
CGACCCGAGGGTAAGGCCAAGCTTGAGAGCTTCTTTCAAAAGAAGACGCC
GGAACGGTCGCTGCAAGAGAGGATCAAGTATCACGAGGAGGTCAAACCCG
GGGCAGAAGGGGAAATGATGCGGATAACGAGCTACATTCGTCTGGATTAC
AAGACCTGGGTGTGGGAGAAGGTTCACAAGATGAAACGCGTCAAATCGTG
ACCGTTTCACTCTGGATGCGACTTTAAAAGGAGGTGATGAGAAAATGTGT
TTGTCCCGCTACCTCGCTGGGACTGGTCACTCTCGTTTGTGCGCTGTGCA
ATCAATAGCTTCTTTGAAACTGTTCTGCGATGTGATCGGCGGTGTCTCGC
TCGGGGGGAATGTAGTACGTGTAGGGTAGCCCAGAAAAGCGATTATCTCA
GGGAGAAAAGAAGAGCCTTGTGTTTGTTCTTCATTTTCAACTGTGAGTTG
GCCCGAGCGCCGATGGTCTACTGGCGAGCTCTCGCAACTTCTGGCACCTT
GCGTCTGAATCCGGTTCCGCATTTCTTCCGTATTGCTTGTGCGAGAGTAA
TAAGGGGTGCCACTTTTTCGCACTTCTTGGATTACAGCACGCGTGTTGGT
TTGATGCAGAAGATTCCTCGTCGGCCCAGATCGGAGCTCCTTATGGTAAT
ACAACGTGTACTTGAAGGTTGCTGTTGTTGTTGTGTTTCATGTGTATGCA
TGTATTTGTGGGCGCTTCTCAAACTAAAATTAATTAAGGAAGGGCTC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2054310..2057506+

>mRNA_P-fluviatile_contig15.2526.1 ID=mRNA_P-fluviatile_contig15.2526.1|Name=mRNA_P-fluviatile_contig15.2526.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=3108bp|location=Sequence derived from alignment at P-fluviatile_contig15:2054310..2057506+ (Porterinema fluviatile SAG_2381)
ATGCCAACTCCAAGTCATATCCGTGCGTTCGAGTTGAGACTCAGGACAAA
CTGGAGCAGCGAAGATGTTGTGCAAATGCTCACGCCGGAGTTCGTGGAGT
CTGTGTTGCTCCAGGGTTTCACCGCTTTGGAACCGAGGATCAAGATGCCA
ACTCCAAGTCATATCCGTGCGTTCGAGTTGAGACTCAGGACAAACTGGAG
CAGCGAAGATGTTGTGCAAATGCTCACGCCGGAGTTCGTGGAGTCTGTGT
TGCTCCAGGGTTTCACCGCTTTGGAACCGAGGATCAAGATGAGGACGCTC
ATTGCCTTCCTCGGGGCTCGAGCTGAGCATCTTGCGTCTCTTCAATATGT
TCTCCCCCACCTTTTGACGGTCGCGGACGGTGATAAAGACGAGTGGGTGC
AGGTAGTGTCCGGCCTTGTGCGTCAGAAGCTCTTGCCGGGCAAAGGAGGT
GATTCATCCAACGACGGCGAAGACCCAACGGCCACGCAGAGTGATTTTGT
TCTGCGTAAGACTGTCCGGGAAGTTCTCCAGCGGGCAAAACAGCACATGT
CGGAGAGGTTCGCGGGCCGCGGCGGCGATGCCGAAAGCCGACATACGTGG
GCGGCTCCTTATTTTGGCCCTTTGGAGGAAAGATACGTCAGCCGTAAACA
GCAGCCTGGCCAGCAAGACTTCGTCAACACGCACTTTAGCGTTAAATATG
ACTTCGTCAGCGAGTTCTCAGAAGACCTTGCTCCCAACGTGGGTAGCGCT
TCCAACGCTTCTTCGTCTCCCACTGGAGGGAGCGCCTCTGCCGCTGCTGC
GCTCGCGTCAAGAGCTGGTCAGAGCGGATTACTGAAATTGCCGGGGCCTT
CCATCCCTCAGGTCACTCCGGCAACACCGAACCTGGCACAATCGCGCAGG
GTCTCCCTTGCTGCGGTTGTAGACCCATCCGCAGGATCGGACGGCCTTCG
GAGGACTAGCAAGCCCATGGCGCTATCACGGAATCAAGCTGGACTCCAAT
CCGGAGCGGCGCGGGGCACGCCGGGTGTCGGCAGCGTGCGAAGCGTGCGG
GGAGGGGGCGGCGGCGCTGGAAGTAAAGCAGGGTTAATGATGATCAACGT
GGACGAGCTTCAGGCAATACATGGTGAAAAGCCGTCTGCGAGAGAAAAGG
CGAAAGGCAAACCCGGCAGGAAGAAGGCTAGGATCCACGGAGATGATGAG
GATGCGGCGATTGGCACTGATCCTTCGTTCGAGGCTACGGCTGCAGGGCA
TCGACAACCCCTTCATAATGGGCAGCAGCCGCAGAGGGCAACTAGCGAGG
GGGAAGCAATTGTTGAGCCAAAAGCACAAGCAAAACCTTCGGCCTCGATG
GAGGGGCCGAAGAGCATCCCACAGCAGGGCGAGATTGAGGCAGTCGCGGC
GATGATGGTTCTAGGGGTCGCAGGCGGGGGCGAGGATGCGGAGACTTCAT
ACCTTCCAGAGGCGCTGGCGACGCTCTTGAAAGATGCCAACTCGCTCCGA
CCCGAGGGTAAGGCCAAGCTTGAGAGCTTCTTTCAAAAGAAGACGCCGGA
ACGGTCGCTGCAAGAGAGGATCAAGTATCACGAGGAGGTCAAACCCGGGG
CAGAAGGGGAAATGATGCGGATAACGAGCTACATTCGTCTGGATTACAAG
ACCTGGGTGTGGGAGAAGGTTCACAAGATGAAACGCGTCAAATCGTGAAT
GAGGACGCTCATTGCCTTCCTCGGGGCTCGAGCTGAGCATCTTGCGTCTC
TTCAATATGTTCTCCCCCACCTTTTGACGGTCGCGGACGGTGATAAAGAC
GAGTGGGTGCAGGTAGTGTCCGGCCTTGTGCGTCAGAAGCTCTTGCCGGG
CAAAGGAGGTGATTCATCCAACGACGGCGAAGACCCAACGGCCACGCAGA
GTGATTTTGTTCTGCGTAAGACTGTCCGGGAAGTTCTCCAGCGGGCAAAA
CAGCACATGTCGGAGAGGTTCGCGGGCCGCGGCGGCGATGCCGAAAGCCG
ACATACGTGGGCGGCTCCTTATTTTGGCCCTTTGGAGGAAAGATACGTCA
GCCGTAAACAGCAGCCTGGCCAGCAAGACTTCGTCAACACGCACTTTAGC
GTTAAATATGACTTCGTCAGCGAGTTCTCAGAAGACCTTGCTCCCAACGT
GGGTAGCGCTTCCAACGCTTCTTCGTCTCCCACTGGAGGGAGCGCCTCTG
CCGCTGCTGCGCTCGCGTCAAGAGCTGGTCAGAGCGGATTACTGAAATTG
CCGGGGCCTTCCATCCCTCAGGTCACTCCGGCAACACCGAACCTGGCACA
ATCGCGCAGGGTCTCCCTTGCTGCGGTTGTAGACCCATCCGCAGGATCGG
ACGGCCTTCGGAGGACTAGCAAGCCCATGGCGCTATCACGGAATCAAGCT
GGACTCCAATCCGGAGCGGCGCGGGGCACGCCGGGTGTCGGCAGCGTGCG
AAGCGTGCGGGGAGGGGGCGGCGGCGCTGGAAGTAAAGCAGGGTTAATGA
TGATCAACGTGGACGAGCTTCAGGCAATACATGGTGAAAAGCCGTCTGCG
AGAGAAAAGGCGAAAGGCAAACCCGGCAGGAAGAAGGCTAGGATCCACGG
AGATGATGAGGATGCGGCGATTGGCACTGATCCTTCGTTCGAGGCTACGG
CTGCAGGGCATCGACAACCCCTTCATAATGGGCAGCAGCCGCAGAGGGCA
ACTAGCGAGGGGGAAGCAATTGTTGAGCCAAAAGCACAAGCAAAACCTTC
GGCCTCGATGGAGGGGCCGAAGAGCATCCCACAGCAGGGCGAGATTGAGG
CAGTCGCGGCGATGATGGTTCTAGGGGTCGCAGGCGGGGGCGAGGATGCG
GAGACTTCATACCTTCCAGAGGCGCTGGCGACGCTCTTGAAAGATGCCAA
CTCGCTCCGACCCGAGGGTAAGGCCAAGCTTGAGAGCTTCTTTCAAAAGA
AGACGCCGGAACGGTCGCTGCAAGAGAGGATCAAGTATCACGAGGAGGTC
AAACCCGGGGCAGAAGGGGAAATGATGCGGATAACGAGCTACATTCGTCT
GGATTACAAGACCTGGGTGTGGGAGAAGGTTCACAAGATGAAACGCGTCA
AATCGTGA
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