mRNA_P-fluviatile_contig15.2518.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2518.1
Unique NamemRNA_P-fluviatile_contig15.2518.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5KQX1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQX1_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 8.630e-28
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG GRS+FLGTKAPN
Sbjct:  296 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDGQGRSKFLGTKAPN 349
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.010e-27
Identity = 52/54 (96.30%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG GRS+FLGTKAPN
Sbjct:  643 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDGQGRSKFLGTKAPN 696
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5KU21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU21_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.520e-27
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLLQ GCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG GRS+FLGTKAPN
Sbjct:  152 EILGLLQKGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDGQGRSKFLGTKAPN 205
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5JYX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYX6_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.490e-27
Identity = 51/54 (94.44%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLL+NGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG GRS+FLGTKAPN
Sbjct:  245 EILGLLKNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDGQGRSKFLGTKAPN 298
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 5.740e-26
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            E+LGLLQNGCLGR KLTD+EGAAFEQEVFVRGGLLLMCGDG GRS+FLGTKAPN
Sbjct:  672 EVLGLLQNGCLGRAKLTDQEGAAFEQEVFVRGGLLLMCGDGQGRSKFLGTKAPN 725
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 6.120e-24
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTK 153
            EILGLL NGCLGRCKLTD+EGAAFEQEVFVRGGLLLMCGDG GRS+FLGTK
Sbjct:  586 EILGLLGNGCLGRCKLTDDEGAAFEQEVFVRGGLLLMCGDGQGRSKFLGTK 636
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5KJ80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ80_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 4.910e-20
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLLQ GCLGR  L DE+GA  E+EVFVRGGLLLMCGDG GRS+ LGTKAPN
Sbjct:  104 EILGLLQQGCLGRRVLRDEQGARSEEEVFVRGGLLLMCGDGRGRSKCLGTKAPN 157
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BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5KML3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KML3_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.520e-20
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLLQ GCLGR  L DE+GA  E+EVFVRGGLLLMCGDG GRS+ LGTKAPN
Sbjct:  338 EILGLLQQGCLGRRVLRDEQGARSEEEVFVRGGLLLMCGDGPGRSKCLGTKAPN 391
[Close]
BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5KI50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI50_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.950e-20
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLLQ GCLGR  L DE+GA  E+EVFVRGGLLLMCGDG GRS+ LGTKAPN
Sbjct:   56 EILGLLQQGCLGRRVLRDEQGARSEEEVFVRGGLLLMCGDGPGRSKCLGTKAPN 109
[Close]
BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Match: A0A6H5KLQ7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLQ7_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 6.980e-20
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:    1 EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*GRSEFLGTKAPN 162
            EILGLLQ GCLGR  L DE+GA  E+EVFVRGGLLLMCGDG GRS+ LGTKAPN
Sbjct:  104 EILGLLQQGCLGRRVLRDEQGARSEEEVFVRGGLLLMCGDGPGRSKCLGTKAPN 157
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5KQX1_9PHAE8.630e-2896.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJM6_9PHAE1.010e-2796.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KU21_9PHAE2.520e-2794.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYX6_9PHAE3.490e-2794.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9M0_9PHAE5.740e-2690.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0J4_9PHAE6.120e-2492.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJ80_9PHAE4.910e-2079.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KML3_9PHAE6.520e-2079.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KI50_9PHAE6.950e-2079.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLQ7_9PHAE6.980e-2079.63Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:2015591..2016061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size163
Cds size126
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2518.1prot_P-fluviatile_contig15.2518.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 2015628..2016061 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.9201996-UTR-P-fluviatile_contig15:2015590..20156271622815663.9201996-UTR-P-fluviatile_contig15:2015590..2015627Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2015591..2015627 -
1693562799.6155555-UTR-P-fluviatile_contig15:2015590..20156271693562799.6155555-UTR-P-fluviatile_contig15:2015590..2015627Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 2015591..2015627 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815663.9369152-CDS-P-fluviatile_contig15:2015627..20156721622815663.9369152-CDS-P-fluviatile_contig15:2015627..2015672Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2015628..2015672 -
1693562799.6238837-CDS-P-fluviatile_contig15:2015627..20156721693562799.6238837-CDS-P-fluviatile_contig15:2015627..2015672Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2015628..2015672 -
1622815663.9492514-CDS-P-fluviatile_contig15:2015980..20160611622815663.9492514-CDS-P-fluviatile_contig15:2015980..2016061Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2015981..2016061 -
1693562799.6332643-CDS-P-fluviatile_contig15:2015980..20160611693562799.6332643-CDS-P-fluviatile_contig15:2015980..2016061Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 2015981..2016061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2518.1

>prot_P-fluviatile_contig15.2518.1 ID=prot_P-fluviatile_contig15.2518.1|Name=mRNA_P-fluviatile_contig15.2518.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=42bp
EILGLLQNGCLGRCKLTDEEGAAFEQEVFVRGGLLLMCGDG*
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mRNA from alignment at P-fluviatile_contig15:2015591..2016061-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2518.1 ID=mRNA_P-fluviatile_contig15.2518.1|Name=mRNA_P-fluviatile_contig15.2518.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=471bp|location=Sequence derived from alignment at P-fluviatile_contig15:2015591..2016061- (Porterinema fluviatile SAG_2381)
GAAATACTCGGACTGCTACAAAATGGATGCCTGGGGCGGTGCAAGCTGAC
AGACGAAGAAGGGGCGGCGTTTGAGCAAGAGGTACGGTCTACGTTCACTG
AGATCATGGAAGATCGAAAACAGTAGTTATCTGTGCTAACCTCGGAATTT
TCGGTTGTGGAAGCGGGGTTTATCATACGATGTTAGTTGCATAACTGGTT
CAGCTGAAGCGAACTTCCCGTACGGCAACGTGTCGGCATTAGGCATGCCT
CTACTAGTGCCATTAGTGCGTATGTGGGTGCGGGTGGCCTTTGCTCGGGT
AACGCACTAAATACTGACGACCACTGCACCAACACACCGACCAAATTTCG
GTCCCGCCACGACTCCGCCAAATTGTTGCCACCCGCCAGGTTTTCGTGCG
TGGCGGTCTGCTGCTGATGTGTGGGGATGGATAAGGGCGCTCGGAATTTC
TCGGCACGAAGGCTCCCAACA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:2015591..2016061-

>mRNA_P-fluviatile_contig15.2518.1 ID=mRNA_P-fluviatile_contig15.2518.1|Name=mRNA_P-fluviatile_contig15.2518.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=252bp|location=Sequence derived from alignment at P-fluviatile_contig15:2015591..2016061- (Porterinema fluviatile SAG_2381)
GAAATACTCGGACTGCTACAAAATGGATGCCTGGGGCGGTGCAAGCTGAC
AGACGAAGAAGGGGCGGCGTTTGAGCAAGAGGAAATACTCGGACTGCTAC
AAAATGGATGCCTGGGGCGGTGCAAGCTGACAGACGAAGAAGGGGCGGCG
TTTGAGCAAGAGGTTTTCGTGCGTGGCGGTCTGCTGCTGATGTGTGGGGA
TGGATAAGTTTTCGTGCGTGGCGGTCTGCTGCTGATGTGTGGGGATGGAT
AA
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