mRNA_P-fluviatile_contig15.2513.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2513.1
Unique NamemRNA_P-fluviatile_contig15.2513.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:1979688..1980473 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size786
Cds size399
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.2158496-UTR-P-fluviatile_contig15:1979687..19800741622815642.2158496-UTR-P-fluviatile_contig15:1979687..1980074Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1979688..1980074 +
1693562652.089349-UTR-P-fluviatile_contig15:1979687..19800741693562652.089349-UTR-P-fluviatile_contig15:1979687..1980074Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1979688..1980074 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.2320697-CDS-P-fluviatile_contig15:1980074..19804731622815642.2320697-CDS-P-fluviatile_contig15:1980074..1980473Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1980075..1980473 +
1693562652.098983-CDS-P-fluviatile_contig15:1980074..19804731693562652.098983-CDS-P-fluviatile_contig15:1980074..1980473Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1980075..1980473 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2513.1prot_P-fluviatile_contig15.2513.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 1980075..1980473 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2513.1

>prot_P-fluviatile_contig15.2513.1 ID=prot_P-fluviatile_contig15.2513.1|Name=mRNA_P-fluviatile_contig15.2513.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=133bp
MGPWKPSPRKGQHSRLHTNKCSFSFSLRRLKKSNKGVLEISANSRAGEAR
SHVRLSAGSDRDQVVGKTIICFRNRVGVAGTIYAQAPLHFAAILHSLWHF
PVGTYAFEEKVKCALRFVAGAFVAFSPDSGAYL
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mRNA from alignment at P-fluviatile_contig15:1979688..1980473+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2513.1 ID=mRNA_P-fluviatile_contig15.2513.1|Name=mRNA_P-fluviatile_contig15.2513.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=786bp|location=Sequence derived from alignment at P-fluviatile_contig15:1979688..1980473+ (Porterinema fluviatile SAG_2381)
GGATGAAGTCAAGAAGCAAGACTCCATTTGAGTGCGAACCCCGAGATTTT
CCGAGACGTCGGACGTCGGGCATAAACTACAATCTATGACTTCGTGCGCA
TGGTCTCCCTCGGTTGCATGTCGTACTAGTATGTCGCCATCGTGGGGTGA
AGGCGAGGGGTGAGGGCGATAAATTCGCAGCAGCGAGGAACGGTTTTGTC
CCAAAACACAGAGCGAGCCTCACCTCGAGCGCACGGGTTTACATGTCATT
TGGAACAGATAAAAAACTGCTACATAGTCTACACACGTTTCAACACAGAC
GTAGTGTACCGTTCCAAACGCACCCACTGTGCAGACTCCAAGCTTTAGCT
GATAGACTGACACACGCAACATCTTGGAAAATAAGAAATGGGGCCATGGA
AGCCATCGCCCCGCAAGGGTCAACACTCACGCCTGCATACAAACAAGTGT
TCTTTCTCGTTCAGCCTACGCCGCCTGAAAAAATCAAACAAAGGCGTGCT
TGAGATATCCGCGAATAGTCGGGCGGGCGAAGCGCGTTCTCATGTACGTT
TGAGCGCAGGAAGTGATAGGGATCAAGTCGTGGGGAAAACTATAATCTGT
TTTCGCAACAGGGTTGGAGTTGCTGGGACCATATACGCCCAAGCCCCCCT
CCACTTCGCCGCCATTTTGCACAGCCTTTGGCATTTCCCTGTTGGTACAT
ATGCGTTCGAGGAAAAAGTCAAATGCGCCCTCAGATTTGTGGCGGGTGCG
TTTGTCGCGTTTTCGCCTGATTCGGGTGCTTACCTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:1979688..1980473+

>mRNA_P-fluviatile_contig15.2513.1 ID=mRNA_P-fluviatile_contig15.2513.1|Name=mRNA_P-fluviatile_contig15.2513.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=798bp|location=Sequence derived from alignment at P-fluviatile_contig15:1979688..1980473+ (Porterinema fluviatile SAG_2381)
ATGGGGCCATGGAAGCCATCGCCCCGCAAGGGTCAACACTCACGCCTGCA
TACAAACAAGTGTTCTTTCTCGTTCAGCCTACGCCGCCTGAAAAAATCAA
ACAAAGGCGTGCTTGAGATATCCGCGAATAGTCGGGCGGGCGAAGCGCGT
TCTCATGTACGTTTGAGCGCAGGAAGTGATAGGGATCAAGTCGTGGGGAA
AACTATAATCTGTTTTCGCAACAGGGTTGGAGTTGCTGGGACCATATACG
CCCAAGCCCCCCTCCACTTCGCCGCCATTTTGCACAGCCTTTGGCATTTC
CCTGTTGGTACATATGCGTTCGAGGAAAAAGTCAAATGCGCCCTCAGATT
TGTGGCGGGTGCGTTTGTCGCGTTTTCGCCTGATTCGGGTGCTTACCTTA
TGGGGCCATGGAAGCCATCGCCCCGCAAGGGTCAACACTCACGCCTGCAT
ACAAACAAGTGTTCTTTCTCGTTCAGCCTACGCCGCCTGAAAAAATCAAA
CAAAGGCGTGCTTGAGATATCCGCGAATAGTCGGGCGGGCGAAGCGCGTT
CTCATGTACGTTTGAGCGCAGGAAGTGATAGGGATCAAGTCGTGGGGAAA
ACTATAATCTGTTTTCGCAACAGGGTTGGAGTTGCTGGGACCATATACGC
CCAAGCCCCCCTCCACTTCGCCGCCATTTTGCACAGCCTTTGGCATTTCC
CTGTTGGTACATATGCGTTCGAGGAAAAAGTCAAATGCGCCCTCAGATTT
GTGGCGGGTGCGTTTGTCGCGTTTTCGCCTGATTCGGGTGCTTACCTT
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