mRNA_P-fluviatile_contig15.2487.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2487.1
Unique NamemRNA_P-fluviatile_contig15.2487.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: D7FLD8_ECTSI (Mitochondrial import inner membrane translocase TIM14 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLD8_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.030e-53
Identity = 112/166 (67.47%), Postives = 128/166 (77.11%), Query Frame = 1
Query:   49 ARTLLSQTRNIHVTRRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKXXXXXXXGTGAAASAGGLFGAFGKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGRK 546
            A+ L+SQ R+IHV+RR++S+VL+  A IA SA+ ARYGL EY+KYQAA P    +   AD+  A  +       XXXXXXX       AGG FGAFGKR Y+GGF+EKMTRKEAALILGVRE A AQRIKDSHRRILMINHPDKGGSKYMAAKINEAKE+LLKGRK
Sbjct:   47 AQALVSQARDIHVSRRNESSVLITGAGIAVSAMVARYGLMEYQKYQAAHPEITEE---ADSGAAGDQTXXXXXXXXXXXXXXXXXXXXAGGFFGAFGKRHYDGGFEEKMTRKEAALILGVRESATAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEILLKGRK 209          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: K8Z3F4_NANGC (Chaperone-domain containing protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z3F4_NANGC)

HSP 1 Score: 125 bits (313), Expect = 1.450e-31
Identity = 85/159 (53.46%), Postives = 107/159 (67.30%), Query Frame = 1
Query:   67 QTRNIHVTRRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKXXXXXXXGTGAAASAGGLFGAFGKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGR 543
            Q R +H TRR ++ V+     +A  A+A +YGL+ YK++QA + A  A+D            ADG   XXXXXXX          +   F KRFYEGGF++KMTR+EAALILGVRE A  QRIK++HRRILM+NHPD GGS Y+A+KINEAKE+LLKGR
Sbjct:   91 QIRALHATRRQENLVV-GGLVVAGGALALQYGLRAYKQWQAKKAAEGAED-----------KADGXXXXXXXXXXXX--------MSSLFAKRFYEGGFEDKMTRREAALILGVRESASPQRIKEAHRRILMLNHPDTGGSTYLASKINEAKELLLKGR 229          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A7S2JUU2_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2JUU2_9STRA)

HSP 1 Score: 116 bits (291), Expect = 3.050e-28
Identity = 78/167 (46.71%), Postives = 108/167 (64.67%), Query Frame = 1
Query:   61 LSQTRNIHVTRRSDSTVLLAS-AAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKXXXXXXXGTGAAASAGGLFGAFG----KRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGRK 546
            L Q R  H+T +++S  L A  AA+A  A A +YGL+ ++++Q  QP  + K        A+ +       XXXXX   + +       F  FG     ++YEGGF++KMTR+EAALILGVRE A  +RIKD+HR+IL++NHPD GGS YMA+KINEAKE+LLKG++
Sbjct:   78 LQQRREYHLTTKTESVALAAGLAAVAVGAKAGQYGLRAFEEWQKNQPKEEPK--------AADDTTXXXXXXXXXXAKASDSKKEKVNFFDQFGFGVGSKYYEGGFEDKMTRREAALILGVRESATVKRIKDAHRKILILNHPDTGGSTYMASKINEAKELLLKGKE 236          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A1V9Z1B4_9STRA (J domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z1B4_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.420e-28
Identity = 69/159 (43.40%), Postives = 101/159 (63.52%), Query Frame = 1
Query:   67 QTRNIHVTRRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKXXXXXXXGTGAAASAGGLFGAFGKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGR 543
            Q+R +H TR  DS +++  A +A +A++ +Y LQ Y++YQAA+ AA A            E A GK+        GT +   +   F    + FY+G F++KMTR+EAALILGVRE A   RI+++HR++L+ NHPD GGS +++ KINEAKE+LL G+
Sbjct:   25 QSRYLHATRPQDSALIVGGAGVAVAAMSVKYLLQSYQQYQAAKAAAPA------------EEAKGKSDAK-----GTSSERGSFFNFNMSYRNFYDGPFEDKMTRREAALILGVRENANPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKEMLLNGK 166          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A067CRK8_SAPPC (J domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRK8_SAPPC)

HSP 1 Score: 113 bits (282), Expect = 1.230e-27
Identity = 71/162 (43.83%), Postives = 101/162 (62.35%), Query Frame = 1
Query:   67 QTRNIHVTRRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKXXXXXXXGTGAAASAGGLFGAFG---KRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGR 543
            Q R +H TR+ DS  ++  A +A +A++A+Y LQ Y++Y+A + AA        A  A     +GK            AAAS  G F  F    + FY+G F++KMTR+EAALILGVRE A   RI+++HR++L+ NHPD GGS +++ KINEAKE+LL G+
Sbjct:   30 QARYLHATRKQDSLAIVGGAGVAVAALSAKYLLQSYQEYKANKAAA--------ATEAPAGKNEGK------------AAASERGSFFNFNMSYRNFYDGPFEDKMTRREAALILGVRENASPDRIRNAHRKLLISNHPDTGGSTFLSTKINEAKEMLLNGK 171          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A482S026_9ARCH (J domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S026_9ARCH)

HSP 1 Score: 112 bits (279), Expect = 6.510e-27
Identity = 68/163 (41.72%), Postives = 109/163 (66.87%), Query Frame = 1
Query:   82 HVTRRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAA------TASGEPADGKAKXXXXXXXGTGAAAS-AGGLFGA-FGKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGRK 546
            H +R +++ +++   A+  +AV  RY +  Y+ Y+  QPA   +  PA+ A      + +G  A+ +A+        T ++ + A  LF + F + FY+GGF+EKMT++EAALILGVRE A  +R+K++HRR+L++NHPDKGGS ++ AKINEAK++LLKG++
Sbjct:   34 HSSRMAENQLIIGGLAVLGTAVTLRYAVAAYETYKQNQPAVTDQP-PAEEANQEEVKSKTGARAEPRAEAQSSARKTTSSSGNPADSLFSSWFARNFYDGGFEEKMTKREAALILGVRESAAVERVKEAHRRMLILNHPDKGGSVFITAKINEAKDLLLKGKQ 195          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A6T7GEL2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A6T7GEL2_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.800e-26
Identity = 74/174 (42.53%), Postives = 104/174 (59.77%), Query Frame = 1
Query:   64 SQTRNIHVT---RRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKA--KDGPADAATASGEPADGKAKXXXXXXXGTGAAASAG---GLFGAF-----GKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGRK 546
            +Q R  H T    R+   + L   A+AA+A A +Y  + Y++YQA+ P  +   K   ADAA A  E +   +K             + G    +F  F     G ++YEGGF+ +MTR+EAAL+LGVRE +  +RIK++HR +LM+NHPD GGS Y+A KINEAKE+L+KGRK
Sbjct:   76 NQRREYHATAQMERAGPALFLGLGAVAATAKAGQYASRAYQEYQASLPTEEELKKQQEADAAAADKEGSKASSKDQKGQDAKQETKKTEGKRENIFAKFFDLGVGSKYYEGGFESEMTRREAALVLGVRESSSPKRIKEAHRNLLMLNHPDTGGSTYIAGKINEAKELLIKGRK 249          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A835YPD5_9STRA (Mitochondrial import inner membrane translocase TIM14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPD5_9STRA)

HSP 1 Score: 111 bits (278), Expect = 2.690e-26
Identity = 53/69 (76.81%), Postives = 62/69 (89.86%), Query Frame = 1
Query:  340 KRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGRK 546
            KRFY+GGF+E MTR+EAALILGVRE A  QRIKD+HRRILM+NHPD+GGS YMA KIN AKE+LLKG++
Sbjct:  171 KRFYDGGFEETMTRREAALILGVRESASPQRIKDAHRRILMLNHPDRGGSTYMAGKINAAKEILLKGKE 239          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A024TT26_9STRA (J domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TT26_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.500e-26
Identity = 62/159 (38.99%), Postives = 98/159 (61.64%), Query Frame = 1
Query:   67 QTRNIHVTRRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKXXXXXXXGTGAAASAGGLFGAFGKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGR 543
            Q R++H TRR ++ +++ S  +AA+A+  +Y L+ Y+ Y+A + A+                             GT  ++++  +F    + FY+G F+EKMTR+EAALILGVRE A A RI+++HR++L+ NHPD GGS +++ KINEAKE+LL G+
Sbjct:   52 QRRSLHATRRQENAIVVGSLGVAAAALGGKYLLEAYEGYKANKAAS-----------------------------GTDKSSASSSMFNMSYRNFYDGPFEEKMTRREAALILGVRESASADRIRNAHRKLLIANHPDTGGSTFISTKINEAKELLLGGK 181          
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Match: A0A1W0A756_9STRA (J domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A756_9STRA)

HSP 1 Score: 108 bits (270), Expect = 5.850e-26
Identity = 69/160 (43.12%), Postives = 100/160 (62.50%), Query Frame = 1
Query:   64 SQTRNIHVTRRSDSTVLLASAAIAASAVAARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKXXXXXXXGTGAAASAGGLFGAFGKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHRRILMINHPDKGGSKYMAAKINEAKEVLLKGR 543
            SQ R +H TR  DS +++  A +A +A++A+Y LQ Y++Y+A +           AA A+ EP   K K          A  S+   F    + FY+G F++KMTR+EAALILGVRE A   RI+++HR++L+ NHPD GGS +++ KINEAKE+LL G+
Sbjct:   25 SQHRYLHATRSQDSALIVGGAGVAVAALSAKYLLQSYQEYKANK-----------AAAATEEP---KEKEE--------AKKSSFFNFNMSYRNFYDGPFEDKMTRREAALILGVRESASPDRIRNAHRKLLIANHPDTGGSTFLSTKINEAKELLLGGK 162          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLD8_ECTSI1.030e-5367.47Mitochondrial import inner membrane translocase TI... [more]
K8Z3F4_NANGC1.450e-3153.46Chaperone-domain containing protein n=1 Tax=Nannoc... [more]
A0A7S2JUU2_9STRA3.050e-2846.71Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A1V9Z1B4_9STRA5.420e-2843.40J domain-containing protein n=1 Tax=Achlya hypogyn... [more]
A0A067CRK8_SAPPC1.230e-2743.83J domain-containing protein n=1 Tax=Saprolegnia pa... [more]
A0A482S026_9ARCH6.510e-2741.72J domain-containing protein n=1 Tax=archaeon TaxID... [more]
A0A6T7GEL2_9STRA1.800e-2642.53Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A835YPD5_9STRA2.690e-2676.81Mitochondrial import inner membrane translocase TI... [more]
A0A024TT26_9STRA3.500e-2638.99J domain-containing protein n=1 Tax=Aphanomyces in... [more]
A0A1W0A756_9STRA5.850e-2643.13J domain-containing protein n=1 Tax=Thraustotheca ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:1777177..1779055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.5
Seed ortholog evalue4.5e-44
Seed eggNOG ortholog2880.D7FLD8
Preferred nameMDJ2
KEGG koko:K09535,ko:K09539
GOsGO:0001405,GO:0001671,GO:0002082,GO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005744,GO:0006140,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0007154,GO:0008047,GO:0008104,GO:0008150,GO:0009267,GO:0009605,GO:0009892,GO:0009987,GO:0009991,GO:0010563,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0019216,GO:0019219,GO:0019220,GO:0019222,GO:0019866,GO:0030150,GO:0030234,GO:0031090,GO:0031323,GO:0031324,GO:0031333,GO:0031667,GO:0031668,GO:0031669,GO:0031966,GO:0031967,GO:0031975,GO:0032781,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0042325,GO:0042326,GO:0042594,GO:0042886,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043457,GO:0043462,GO:0043467,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044743,GO:0045184,GO:0045934,GO:0045936,GO:0045980,GO:0046907,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0051716,GO:0055085,GO:0060589,GO:0060590,GO:0062012,GO:0062014,GO:0065002,GO:0065007,GO:0065009,GO:0070585,GO:0070727,GO:0071496,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0072594,GO:0072655,GO:0080090,GO:0090324,GO:0098772,GO:0098796,GO:0098798,GO:0098800,GO:1900542,GO:1900543,GO:1901856,GO:1902956,GO:1902957,GO:1903578,GO:1903579,GO:1905446,GO:1905447,GO:1990542
EggNOG free text desc.protein transport
EggNOG OGsCOG2214@1,KOG0723@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionMitochondrial import inner membrane translocase TIM14 homolog
Ec32 orthologEc-12_007780.1
Exons3
Model size737
Cds size549
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2487.1prot_P-fluviatile_contig15.2487.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 1777177..1778867 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.1650493-CDS-P-fluviatile_contig15:1777176..17773621622815660.1650493-CDS-P-fluviatile_contig15:1777176..1777362Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1777177..1777362 +
1693562775.0418093-CDS-P-fluviatile_contig15:1777176..17773621693562775.0418093-CDS-P-fluviatile_contig15:1777176..1777362Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1777177..1777362 +
1622815660.186788-CDS-P-fluviatile_contig15:1778183..17784351622815660.186788-CDS-P-fluviatile_contig15:1778183..1778435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1778184..1778435 +
1693562778.8493302-CDS-P-fluviatile_contig15:1778183..17784351693562778.8493302-CDS-P-fluviatile_contig15:1778183..1778435Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1778184..1778435 +
1622815660.1988592-CDS-P-fluviatile_contig15:1778756..17788671622815660.1988592-CDS-P-fluviatile_contig15:1778756..1778867Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1778757..1778867 +
1693562779.27246-CDS-P-fluviatile_contig15:1778756..17788671693562779.27246-CDS-P-fluviatile_contig15:1778756..1778867Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1778757..1778867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.2148755-UTR-P-fluviatile_contig15:1778867..17790551622815660.2148755-UTR-P-fluviatile_contig15:1778867..1779055Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1778868..1779055 +
1693562779.283512-UTR-P-fluviatile_contig15:1778867..17790551693562779.283512-UTR-P-fluviatile_contig15:1778867..1779055Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1778868..1779055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2487.1

>prot_P-fluviatile_contig15.2487.1 ID=prot_P-fluviatile_contig15.2487.1|Name=mRNA_P-fluviatile_contig15.2487.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=183bp
MDAGGDFRRESRDEKDARTLLSQTRNIHVTRRSDSTVLLASAAIAASAVA
ARYGLQEYKKYQAAQPAAKAKDGPADAATASGEPADGKAKKASPESPGTG
AAASAGGLFGAFGKRFYEGGFDEKMTRKEAALILGVRERAPAQRIKDSHR
RILMINHPDKGGSKYMAAKINEAKEVLLKGRK*
back to top

mRNA from alignment at P-fluviatile_contig15:1777177..1779055+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2487.1 ID=mRNA_P-fluviatile_contig15.2487.1|Name=mRNA_P-fluviatile_contig15.2487.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1879bp|location=Sequence derived from alignment at P-fluviatile_contig15:1777177..1779055+ (Porterinema fluviatile SAG_2381)
ATGGATGCCGGAGGTGACTTCCGCCGAGAAAGCCGAGATGAAAAAGATGC CAGAACTCTCCTTTCTCAGACCCGGAATATACACGTCACCCGCCGCAGTG ACTCCACAGTACTTCTCGCTAGTGCTGCCATAGCTGCATCCGCGGTGGCT GCTCGCTATGGTCTTCAGGAGTACAAGAAATATCAGGTAGCAATCTATAT CGTCAGAGTTAAATAACGCACGTGCCCTACGATCAACACACACGCACCGC CCTCGAGAACCCCCCTAGAGAGCGAGAGGCGAGGAGCCCACCGCGGCATT TCCGAGCAACAACCTACGCTTCCGCGGAAGCGTTCAGTTGTCATATAGCA TATATGTCCCCTCTCTTCACCGCATTTCCTCACATTTGACTGCATCACGT CCTAATTTCCCAATTTTATCCAATCATCCTTCCACACTCCGCCAAGCTTT TTGTCGGGTCTGAGCTCTGGACATGCGACGCTGCGTCCGTCTCCGACCAG CGAGAACAAATCTCACTCTGCAGTCTGAGCTTACTCTCCGATGCACACTC TATTCGCGATGTTGGATTCGTTTTTTTATCAACCTCGCATCCCCTCGATA AAGCTTTTGTGTAGCTCTACTTTGTCAAAGCAAATGATGACCGACATCAT CTGTCGCACACTCACAAACGATGGGCACAAAACTGGCATCCAAACCTGTT GGTACGTGGCACACTCAACAGTGTCCGAATATCTCATTTGGAAAAACCGC GACTGTGCACGGAGTGTGAGAGGTAGCATGCAAGGTGCATTCTCGAAATT GAAGTCAACGTAGCCGAGTCTCCACCCTCTCGCGAATCCCGGCACTTCCT TGACCAATCTAGCACGGGAGCTTCTCAGACAATCTGTCTCGAAGGGTGTG CTCAAAAGCGATAGCGCCCAGTCTTCTGCCGAAGCATGACTTCACCCCAA GTGTGGCTTGTTTACAAACGTGACTCCGCCTCCCCAACATGTCCTTGTTT GCTGCAGGCAGCGCAGCCTGCAGCAAAGGCAAAAGACGGGCCAGCAGACG CGGCAACTGCAAGTGGTGAGCCCGCGGATGGTAAGGCAAAGAAGGCATCA CCAGAAAGCCCTGGGACGGGCGCAGCAGCGAGCGCGGGCGGACTCTTCGG AGCTTTCGGGAAACGTTTTTACGAGGGCGGTTTCGACGAAAAGATGACGA GAAAGGAAGCAGCCCTAATTTTGGGAGTGAGAGAGAGAGCACCAGCACAG AGGATAAAGGTACGGCGATGTCTTACTGCCGCCTTCTCCTCTCTCGGGTA GCTGTTCAATGTGCACAACGCTCGAAGACGTTGTTGGAACACGTACGAGT GCATGAAACGCCTTCGTCGCACGAAGCTTTGAGGTTTCCTTGTGCTTTTT TGAGAAACACGTTGCCGCATCGAGTTCATCCTTCATGCTCGCCGTCGCTC GGCATCACAGTTCACAAGCGTGACCTTGTAGTTTTCTGTGCTCATGGTGT TCACCATTTCTTGTGTAATTCCGCCGGGTTGCCCATGGGTTTACTCTTGT CTGTCCGCTTGCTCTCATCCTCATCCCCAGGATTCTCACCGAAGAATTTT GATGATCAACCATCCGGACAAGGGAGGCTCAAAATACATGGCGGCAAAGA TTAACGAGGCCAAGGAGGTCCTCCTCAAGGGGAGGAAATAGGTGGTGGCA GCGATCAAGGGAAACCCAAAATACCGGACCTCTGCTTTTTTGCTTTTCCA GCCTCCTGGGTTGCTTTGGTCACGTTGACCGAGAGGAGATAGTTTTCCCG CAATTTTATTTCGACAATAGCGCAGTCAGATCATCGGGAAGTCACGGCAA GACAGCACTTGGTTTGTACGGCTGTAGGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig15:1777177..1779055+

>mRNA_P-fluviatile_contig15.2487.1 ID=mRNA_P-fluviatile_contig15.2487.1|Name=mRNA_P-fluviatile_contig15.2487.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1098bp|location=Sequence derived from alignment at P-fluviatile_contig15:1777177..1779055+ (Porterinema fluviatile SAG_2381)
ATGGATGCCGGAGGTGACTTCCGCCGAGAAAGCCGAGATGAAAAAGATGC
CAGAACTCTCCTTTCTCAGACCCGGAATATACACGTCACCCGCCGCAGTG
ACTCCACAGTACTTCTCGCTAGTGCTGCCATAGCTGCATCCGCGGTGGCT
GCTCGCTATGGTCTTCAGGAGTACAAGAAATATCAGATGGATGCCGGAGG
TGACTTCCGCCGAGAAAGCCGAGATGAAAAAGATGCCAGAACTCTCCTTT
CTCAGACCCGGAATATACACGTCACCCGCCGCAGTGACTCCACAGTACTT
CTCGCTAGTGCTGCCATAGCTGCATCCGCGGTGGCTGCTCGCTATGGTCT
TCAGGAGTACAAGAAATATCAGGCAGCGCAGCCTGCAGCAAAGGCAAAAG
ACGGGCCAGCAGACGCGGCAACTGCAAGTGGTGAGCCCGCGGATGGTAAG
GCAAAGAAGGCATCACCAGAAAGCCCTGGGACGGGCGCAGCAGCGAGCGC
GGGCGGACTCTTCGGAGCTTTCGGGAAACGTTTTTACGAGGGCGGTTTCG
ACGAAAAGATGACGAGAAAGGAAGCAGCCCTAATTTTGGGAGTGAGAGAG
AGAGCACCAGCACAGAGGATAAAGGCAGCGCAGCCTGCAGCAAAGGCAAA
AGACGGGCCAGCAGACGCGGCAACTGCAAGTGGTGAGCCCGCGGATGGTA
AGGCAAAGAAGGCATCACCAGAAAGCCCTGGGACGGGCGCAGCAGCGAGC
GCGGGCGGACTCTTCGGAGCTTTCGGGAAACGTTTTTACGAGGGCGGTTT
CGACGAAAAGATGACGAGAAAGGAAGCAGCCCTAATTTTGGGAGTGAGAG
AGAGAGCACCAGCACAGAGGATAAAGGATTCTCACCGAAGAATTTTGATG
ATCAACCATCCGGACAAGGGAGGCTCAAAATACATGGCGGCAAAGATTAA
CGAGGCCAAGGAGGTCCTCCTCAAGGGGAGGAAATAGGATTCTCACCGAA
GAATTTTGATGATCAACCATCCGGACAAGGGAGGCTCAAAATACATGGCG
GCAAAGATTAACGAGGCCAAGGAGGTCCTCCTCAAGGGGAGGAAATAG
back to top