mRNA_P-fluviatile_contig15.2445.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2445.1
Unique NamemRNA_P-fluviatile_contig15.2445.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2445.1 vs. uniprot
Match: D7FLP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLP9_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.440e-15
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   52 SLIKLVLSHKNELLLCMDAMNDSYIAQVSMIKTYRPTLTAEWTDRRVSFVISGLSGRRYAAAVKIQTIVRMHQARKRTIRCQEMHVW 312
            S++K+  SHKNEL+ CMDA+N  Y++Q+SM K YRP    + + + VS     L   R  AAVKIQT+VRM+QA +R +R QE+ VW
Sbjct:  144 SVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW 230
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BLAST of mRNA_P-fluviatile_contig15.2445.1 vs. uniprot
Match: D7G4X3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4X3_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 7.990e-15
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:   52 SLIKLVLSHKNELLLCMDAMNDSYIAQVSMIKTYRPTLTAEWTDRRVSFVISGLSGRRYAAAVKIQTIVRMHQARKRTIRCQEMHVW 312
            S++K+  SHKNEL+ CMDA+N  Y++Q+SM K YRP    + + + VS     L   R  AAVKIQT+VRM+QA +R +R QE+ VW
Sbjct: 1652 SVVKIFGSHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSSTIDLCILRNTAAVKIQTLVRMYQAHQRAVRRQEVVVW 1738
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BLAST of mRNA_P-fluviatile_contig15.2445.1 vs. uniprot
Match: A0A6H5JLT2_9PHAE (GPS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLT2_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 1.440e-14
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:   73 SHKNELLLCMDAMNDSYIAQVSMIKTYRPTLTAEWTDRRVSFVISGLSGRRYAAAVKIQTIVRMHQARKRTIRCQEMHVWHS 318
            SHKNEL+ CMDA+N  Y++Q+SM K YRP    + + + VS     L   R  AAVKIQT+VRM+QAR+R +R QE+  W S
Sbjct:  725 SHKNELMPCMDAVNQRYMSQISMAKMYRPPPKVDHSHQHVSSWTIDLCILRNTAAVKIQTLVRMYQARQRAVRRQEVVAWQS 806
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FLP9_ECTSI2.440e-1549.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4X3_ECTSI7.990e-1549.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLT2_9PHAE1.440e-1451.22GPS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:1180421..1182329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue9.3e-13
Seed eggNOG ortholog2880.D7G4X3
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size331
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2445.1prot_P-fluviatile_contig15.2445.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 1180421..1182329 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815652.8502629-CDS-P-fluviatile_contig15:1180420..11804691622815652.8502629-CDS-P-fluviatile_contig15:1180420..1180469Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1180421..1180469 -
1693562722.1479547-CDS-P-fluviatile_contig15:1180420..11804691693562722.1479547-CDS-P-fluviatile_contig15:1180420..1180469Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1180421..1180469 -
1622815652.861655-CDS-P-fluviatile_contig15:1180965..11811141622815652.861655-CDS-P-fluviatile_contig15:1180965..1181114Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1180966..1181114 -
1693562722.1582625-CDS-P-fluviatile_contig15:1180965..11811141693562722.1582625-CDS-P-fluviatile_contig15:1180965..1181114Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1180966..1181114 -
1622815652.8741305-CDS-P-fluviatile_contig15:1181722..11817731622815652.8741305-CDS-P-fluviatile_contig15:1181722..1181773Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1181723..1181773 -
1693562722.1721625-CDS-P-fluviatile_contig15:1181722..11817731693562722.1721625-CDS-P-fluviatile_contig15:1181722..1181773Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1181723..1181773 -
1622815652.8845637-CDS-P-fluviatile_contig15:1182248..11823291622815652.8845637-CDS-P-fluviatile_contig15:1182248..1182329Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1182249..1182329 -
1693562722.1867666-CDS-P-fluviatile_contig15:1182248..11823291693562722.1867666-CDS-P-fluviatile_contig15:1182248..1182329Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1182249..1182329 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2445.1

>prot_P-fluviatile_contig15.2445.1 ID=prot_P-fluviatile_contig15.2445.1|Name=mRNA_P-fluviatile_contig15.2445.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=110bp
NFVTSSKFREYIAIAVVSLIKLVLSHKNELLLCMDAMNDSYIAQVSMIKT
YRPTLTAEWTDRRVSFVISGLSGRRYAAAVKIQTIVRMHQARKRTIRCQE
MHVWHSRDVV
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mRNA from alignment at P-fluviatile_contig15:1180421..1182329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2445.1 ID=mRNA_P-fluviatile_contig15.2445.1|Name=mRNA_P-fluviatile_contig15.2445.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1909bp|location=Sequence derived from alignment at P-fluviatile_contig15:1180421..1182329- (Porterinema fluviatile SAG_2381)
AACTTCGTAACGTCCTCGAAGTTCCGCGAATACATCGCAATCGCTGTTGT
CTCTCTTATCAAGCTCGTCTTAAGCCATAAGGTGAGGAGATTATTTCGGA
ACTTGTGAGGCTCAAGTCCCGAATCGTTGCTGCAAAGCGAGCATTAACGA
CTTCCCGAACCCACTGGCGTGGACCTGCTGGGTGCTGTCCGCACGATTTG
TTGCGTAAAGCACTCCCGTGTCTCTTTTTTTTTTTGTCGCGGCCCGTGTT
TTTTTGCGGTGGTCCGAGGGCTTCATGAGCGTGGACTCTTGAAGCCCCCG
AGATGTGATGATCAAGATGCGGCCGTCAACAATAGCAACCGTTTAGGTTC
CATGATGTCACCTGCCACACGACAAATTGTGCAAGCACTCGAATACATAC
GTACATCCAATGTATTTCATGCGAAACAGCAACGCTGCGTGTGCTAAAAC
TGTCCTATCACCTCCGAACTCCAACGGCGACTCCCTGCGGACCCCGCTCC
GCACGCCGATCGCTCGATTCTCCCGGCAACAAACAAAACGAAACGAAACA
AAACAGAACGAGCTGTTGCTGTGCATGGATGCTATGAACGACAGCTACAT
TGCGCAGGTACGCCCTGCAGTCACGGTTTGCACGAAAATCGTACGCGTAA
TTTCTTGTTTTTCAGAAGAGCAAGTATGTAACGGAGTAATCAGGATCCAC
AAAAAATTCTTGCAACAGAAAGGTGGATGGTTTTATTCCTAAAATTTGAA
ACCTGGCCACATTCATTTCGTTTTTGAAGAAACGAAATTACTGCGTTGTG
CCTATGGCGACTGCTGTACTCTCCCCCTTCGAGGACCGAATCGTTCATCC
GAAGGCAGTGAGCAACGCTGAGGCGAAACACGCGGTCGACAGGGGCTTTG
TGCGTTAACTGATTCATGATCCTCACGTATACCTGAAAGCATGGGCTATG
CGCCCGGCTGGCGATTTCGTAAAACAAGAAAATGCGTCAGTGAACCGGGA
AGTGCGTGACTGGTCAGGCAAACTGGTGTGCTGGATCTCCTCCGGATGCT
ATCGAAAATGTTTGTGGCTAACGGGTTGAACCCCTTCGTGTCAGAAACGC
GCGCCGTCCTGTTCTAGGCGTAAACAGGTGTTAGTTGCTTGTGACGCTTT
CACAGATGTCTTAATGTGCTTGGTTTACGAAACGTTCCCCGAACGTGACC
CTGTTTACGTCTCAGGTATCGATGATCAAGACATATCGACCGACCCTCAC
CGCCGAATGGACTGACCGAAGAGTGTCGTTCGTTATTTCCGGCTTAAGCG
GCCGGCGGTATGCAGCCGCTGTCAAGATTCAGACGATTGTGCGCATGCAT
CAGGCTCGAAAGAGGTGCGCGCGCACGGGGACAACAGATGGAAGCACTCA
AGGCGGGGTTTCGAGCGAAAATAATTCGTGTTTTCTGGTCAAATTCTCAA
GATTCTTGCACCAGTCTTTCACCATCAAAATCGCAAGATGCTGCTGCCCA
AGCACACCTACGGATGTATGGATTCGACCAACGAGCGGGTCGGGTCTACT
ACAGCCCCCGCCGGCACAAGTTTGTGTCTGTCTTTATCAAAACGGAAAAA
TGCGAGATTCAATTCGACGTCATTTCTTGGATTCAGAACTGCATATCACA
CAAATGTTTAAACAAAACACTAATCGCACACAAATGTTCCCTTCAAACCA
AAAAATCTACAAAAACACTGTCTCGTTATTGTAATTCAACCCGTTTCACA
GTAAACCGCGGTTTTCTTCTCTTCGACAAAAAACACTTCATTTTTGTGTC
TGCGGTGAATTATGCTGCTGTGCAATGTATTTGTCCGGTGCTGTGTAACT
CGCCGCGCAGGACCATTCGCTGCCAGGAGATGCACGTGTGGCACAGCCGA
GACGTGGTG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:1180421..1182329-

>mRNA_P-fluviatile_contig15.2445.1 ID=mRNA_P-fluviatile_contig15.2445.1|Name=mRNA_P-fluviatile_contig15.2445.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=660bp|location=Sequence derived from alignment at P-fluviatile_contig15:1180421..1182329- (Porterinema fluviatile SAG_2381)
AACTTCGTAACGTCCTCGAAGTTCCGCGAATACATCGCAATCGCTGTTGT
CTCTCTTATCAAGCTCGTCTTAAGCCATAAGAACTTCGTAACGTCCTCGA
AGTTCCGCGAATACATCGCAATCGCTGTTGTCTCTCTTATCAAGCTCGTC
TTAAGCCATAAGAACGAGCTGTTGCTGTGCATGGATGCTATGAACGACAG
CTACATTGCGCAGAACGAGCTGTTGCTGTGCATGGATGCTATGAACGACA
GCTACATTGCGCAGGTATCGATGATCAAGACATATCGACCGACCCTCACC
GCCGAATGGACTGACCGAAGAGTGTCGTTCGTTATTTCCGGCTTAAGCGG
CCGGCGGTATGCAGCCGCTGTCAAGATTCAGACGATTGTGCGCATGCATC
AGGCTCGAAAGAGGTATCGATGATCAAGACATATCGACCGACCCTCACCG
CCGAATGGACTGACCGAAGAGTGTCGTTCGTTATTTCCGGCTTAAGCGGC
CGGCGGTATGCAGCCGCTGTCAAGATTCAGACGATTGTGCGCATGCATCA
GGCTCGAAAGAGGACCATTCGCTGCCAGGAGATGCACGTGTGGCACAGCC
GAGACGTGGTGGACCATTCGCTGCCAGGAGATGCACGTGTGGCACAGCCG
AGACGTGGTG
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