mRNA_P-fluviatile_contig15.2443.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2443.1
Unique NamemRNA_P-fluviatile_contig15.2443.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Match: A0A6H5JZQ9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ9_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.770e-17
Identity = 38/47 (80.85%), Postives = 42/47 (89.36%), Query Frame = 1 
Query:   67 SARPRKAAANTMHGNIVKCWGAATNKPIKRTRNGIVEEVTRVHYPIA 207
            +A+   AAANTMHGNIV CW A+TN+PIKRTRNGIVEEVTRVHYPIA
Sbjct:   54 TAKEASAAANTMHGNIVNCWAASTNEPIKRTRNGIVEEVTRVHYPIA 100
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BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Match: A0A6H5JW43_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW43_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 9.630e-17
Identity = 38/41 (92.68%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:   85 AAANTMHGNIVKCWGAATNKPIKRTRNGIVEEVTRVHYPIA 207
            AAANTMH NIV CW AATNKPIKRTRNGIVEEVTRVHYPIA
Sbjct:  164 AAANTMHENIVNCWAAATNKPIKRTRNGIVEEVTRVHYPIA 204
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BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Match: A0A6H5L5T4_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T4_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 1.040e-12
Identity = 31/36 (86.11%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:  100 MHGNIVKCWGAATNKPIKRTRNGIVEEVTRVHYPIA 207
            MHGNIV  W A TNKPIKRTRNGIVEEVT VHYPIA
Sbjct:    1 MHGNIVNSWAAPTNKPIKRTRNGIVEEVTGVHYPIA 36
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BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Match: A0A6H5KB06_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB06_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.540e-11
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 1 
Query:   67 SARPRKAAANTMHGNIVKCWGAATNKP-------------IKRTRNGIVEEVTRVHYPIA 207
            +A+  +AAAN MH NIV  W AAT+KP             IKRTRNGIVEEVTRVHYPIA
Sbjct:  100 TAKEARAAANRMHANIVNSWAAATSKPVGWMEIPFASFGHIKRTRNGIVEEVTRVHYPIA 159
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BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Match: A0A6H5KER2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KER2_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.270e-5
Identity = 25/28 (89.29%), Postives = 26/28 (92.86%), Query Frame = 1 
Query:    1 AEQQGLVGRRWRRLLDPHRKRASARPRK 84
            AE+QGLVGRRW RLL PHRKRASARPRK
Sbjct:   90 AEKQGLVGRRWWRLLAPHRKRASARPRK 117
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BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Match: A0A6H5JW86_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW86_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 5.060e-5
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   67 SARPRKAAANTMHGNIVKCWGAATNKPI 150
            +A+  +AAANTMHGNIV CW AATNKP+
Sbjct:  204 TAKEARAAANTMHGNIVNCWAAATNKPV 231
[Close]
BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Match: A0A6H5KCL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCL0_9PHAE)

HSP 1 Score: 48.9 bits (115), Expect = 5.700e-5
Identity = 20/28 (71.43%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   67 SARPRKAAANTMHGNIVKCWGAATNKPI 150
            +A+  +AAANTMHGNIV CW AATNKP+
Sbjct:  256 TAKEARAAANTMHGNIVNCWAAATNKPV 283
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JZQ9_9PHAE3.770e-1780.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JW43_9PHAE9.630e-1792.68C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L5T4_9PHAE1.040e-1286.11C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KB06_9PHAE1.540e-1160.00C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KER2_9PHAE1.270e-589.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW86_9PHAE5.060e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCL0_9PHAE5.700e-571.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:1126347..1127333 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size212
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.8248363-CDS-P-fluviatile_contig15:1126348..11264111622815639.8248363-CDS-P-fluviatile_contig15:1126348..1126411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1126349..1126411 -
1693562642.107012-CDS-P-fluviatile_contig15:1126348..11264111693562642.107012-CDS-P-fluviatile_contig15:1126348..1126411Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1126349..1126411 -
1622815639.8426473-CDS-P-fluviatile_contig15:1127186..11273331622815639.8426473-CDS-P-fluviatile_contig15:1127186..1127333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1127187..1127333 -
1693562642.394795-CDS-P-fluviatile_contig15:1127186..11273331693562642.394795-CDS-P-fluviatile_contig15:1127186..1127333Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1127187..1127333 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2443.1prot_P-fluviatile_contig15.2443.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 1126349..1127333 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2443.1

>prot_P-fluviatile_contig15.2443.1 ID=prot_P-fluviatile_contig15.2443.1|Name=mRNA_P-fluviatile_contig15.2443.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=70bp
AEQQGLVGRRWRRLLDPHRKRASARPRKAAANTMHGNIVKCWGAATNKPI
KRTRNGIVEEVTRVHYPIAL
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mRNA from alignment at P-fluviatile_contig15:1126347..1127333-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2443.1 ID=mRNA_P-fluviatile_contig15.2443.1|Name=mRNA_P-fluviatile_contig15.2443.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=987bp|location=Sequence derived from alignment at P-fluviatile_contig15:1126347..1127333- (Porterinema fluviatile SAG_2381)
GCGGAGCAGCAGGGGTTGGTGGGTCGCAGATGGCGGAGACTCCTAGACCC
GCACAGAAAAAGGGCAAGCGCCCGGCCAAGGAAGGCGGCGGCGAACACGA
TGCACGGGAACATCGTCAAGTGCTGGGGCGCAGCAACAAACAAGCCGGTG
AGTTGGTTGGAGATTCCGTTTGCATCCTTTGCATGTTCGTGAATGACAAG
TGTTTGTCCGGTGCATCAGCTGTTTCGTCTCCCTCGCCCGCACTGTTGAC
CGGCAGAGGAAATAAAGCAGAAAAATATGCGGAGGATTCTTTTGGTTCAC
CATTTTCGAATCCTGGCAGTGCCCTTTTTTCTTTATTTTTTTTAGGCCGT
TTCTTATGCGTTCGGATTTGGCGTTCAGATTTGGGAGAATATCCGAACCG
AATTCCAGCCCCCAGTGACTTTCGGTCGGCGTCTCTTGAGGCCGGTAACT
GTGGTGGTTGGAGAGAGAGAAACGGAGTAGAAGATAGGATGTATTTTTAA
ATAAGAAGCTTGTCGGAAGGGCCGAGAAATATTTTTCAAAATATTTGTCG
AAAATTCCACACCGTAAGAAACGGTCTTTTACACTCGTATTTGTTTCATC
TTTTTTGTTCACACTTGCTTGCAGCTGGTGTCGAAGTGTGCCAATCTGGC
CGGCAGAGAAACCAAAACACGAATGTTTCACGAGAGATTATTTTCGTTCA
CCATCGAGTTCGAGGACGCGGTTTTGAATCCTGGCACTGCCCGTTATTTT
GCTTTCGTGTTTTTTCAACTCTTTTTTTCTGCAACACTTTTTGCTGCTGT
TGTCAAAGTGTGCCAATCACATGCCGCTGCCGTTGAAAGTGGAGGGACAG
CTGACACACATTTTTTGCTTCACTCTAAGATCCCCGTACCCCGGGCCTCG
CTTTCCTGCTATTTTCTCGCAGATCAAGCGTACCCGCAATGGCATCGTGG
AGGAAGTCACCCGCGTCCACTATCCCATCGCACTACC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:1126347..1127333-

>mRNA_P-fluviatile_contig15.2443.1 ID=mRNA_P-fluviatile_contig15.2443.1|Name=mRNA_P-fluviatile_contig15.2443.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=420bp|location=Sequence derived from alignment at P-fluviatile_contig15:1126347..1127333- (Porterinema fluviatile SAG_2381)
GCGGAGCAGCAGGGGTTGGTGGGTCGCAGATGGCGGAGACTCCTAGACCC
GCACAGAAAAAGGGCAAGCGCCCGGCCAAGGAAGGCGGCGGCGAACACGA
TGCACGGGAACATCGTCAAGTGCTGGGGCGCAGCAACAAACAAGCCGGCG
GAGCAGCAGGGGTTGGTGGGTCGCAGATGGCGGAGACTCCTAGACCCGCA
CAGAAAAAGGGCAAGCGCCCGGCCAAGGAAGGCGGCGGCGAACACGATGC
ACGGGAACATCGTCAAGTGCTGGGGCGCAGCAACAAACAAGCCGATCAAG
CGTACCCGCAATGGCATCGTGGAGGAAGTCACCCGCGTCCACTATCCCAT
CGCACTAATCAAGCGTACCCGCAATGGCATCGTGGAGGAAGTCACCCGCG
TCCACTATCCCATCGCACTA
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