mRNA_P-fluviatile_contig15.2442.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2442.1
Unique NamemRNA_P-fluviatile_contig15.2442.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5JMP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP4_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.150e-46
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRKQTREM G  E PGPGET  PEEALLAT+LETGG  IV++Y+CNSLVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGS QP PDPQL
Sbjct:   79 PLRHGLESGRTRKQTREMQGAGEMPGPGETSYPEEALLATILETGGTGIVEDYMCNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSLQPLPDPQL 186
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BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5JCR5_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR5_9PHAE)

HSP 1 Score: 166 bits (421), Expect = 1.220e-45
Identity = 87/108 (80.56%), Postives = 96/108 (88.89%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRKQTREM G  E PGPGETPDPEE LLAT+LETGGM IV++YICNSLVKE+W+EEQTRRMEEM+RRE+Q+VLG E+QAF AEV  SGSSQP PDPQL
Sbjct:  491 PLRHGLESGRTRKQTREMQGAWEMPGPGETPDPEEVLLATILETGGMGIVEDYICNSLVKEQWDEEQTRRMEEMNRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQL 598
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BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5L1D0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.670e-44
Identity = 82/107 (76.64%), Postives = 91/107 (85.05%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQ 321
            PLRHGLE GRTRKQT EM G  E PGPG+TPDPEEALLAT+LE GG  IV++YICNSLVKE+W+EEQ RRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQ
Sbjct:  133 PLRHGLESGRTRKQTWEMQGAGEMPGPGQTPDPEEALLATILENGGTGIVEDYICNSLVKEQWDEEQIRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQ 239
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BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5JMC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMC7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 7.310e-44
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRKQTREM G  E PG GET DP+EALLAT+LETGG  IV++YICNSLVKE+W+EEQTRRMEEM RRE+Q+VLG ++Q F AEV  SGSSQP PDPQL
Sbjct:  167 PLRHGLESGRTRKQTREMQGVGEMPGAGETSDPQEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPKQQTFGAEVDASGSSQPLPDPQL 274
[Close]
BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5KIB0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB0_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 7.920e-44
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTR+QTREM G  E PGPGETPD EEALLAT+LETGG  I ++YICNSLVKE+W+EEQTR ME+M RRE+Q+VLG E+QAF AEV  SGSSQP PDPQL
Sbjct:  124 PLRHGLESGRTRRQTREMQGAGEMPGPGETPDREEALLATILETGGTGIFEDYICNSLVKEQWDEEQTRHMEKMYRREIQEVLGPEQQAFGAEVDASGSSQPLPDPQL 231
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BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5KF18_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF18_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 9.700e-44
Identity = 85/108 (78.70%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRKQTREM G  E  GPGETPDPEEALLAT+LETGG  IV++YICNSLVKE+W+EEQTR MEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQL
Sbjct:   89 PLRHGLESGRTRKQTREMQGAGEMSGPGETPDPEEALLATILETGGTGIVEDYICNSLVKEQWDEEQTRHMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQL 196
[Close]
BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5JNJ1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ1_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 8.430e-43
Identity = 83/108 (76.85%), Postives = 91/108 (84.26%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRKQTREM G  E P PGET DPEEALLAT+LETGG   V++YICNSLVKE+W+EEQTRR EEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQL
Sbjct:  135 PLRHGLESGRTRKQTREMQGAGEMPRPGETTDPEEALLATILETGGTGTVEDYICNSLVKEQWDEEQTRRTEEMYRREVQEVLGPEQQAFGAEVDASGSSQPLPDPQL 242
[Close]
BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5K1G4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G4_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 1.800e-42
Identity = 83/108 (76.85%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTR QTREM G  E  GPGETP P+EALLAT+LETGG  IV++YICNSLVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQL
Sbjct:  356 PLRHGLESGRTRYQTREMQGAGEMSGPGETPVPKEALLATILETGGAGIVEDYICNSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQL 463
[Close]
BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5JI90_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI90_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 4.410e-42
Identity = 82/108 (75.93%), Postives = 93/108 (86.11%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRK+ REM G  E P PGETPDPEEALLAT+L+TGG  IV++YIC+SLVKE+W+EEQTRRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQL
Sbjct:  333 PLRHGLESGRTRKKAREMQGAGEMPVPGETPDPEEALLATILKTGGTGIVEDYICSSLVKEQWDEEQTRRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQL 440
[Close]
BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Match: A0A6H5JDW3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDW3_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 5.940e-42
Identity = 82/108 (75.93%), Postives = 92/108 (85.19%), Query Frame = 1 
Query:    1 PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIVQEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSSQPQPDPQL 324
            PLRHGLE GRTRKQTREM G  E PGPGETPDPE ALLAT+LETG   IV+++ICNSLVKE+W++EQ RRMEEM RRE+Q+VLG E+QAF AEV  SGSSQP PDPQL
Sbjct:  350 PLRHGLESGRTRKQTREMQGAGEIPGPGETPDPEGALLATILETGWTGIVEDFICNSLVKEQWDKEQARRMEEMYRREMQEVLGPEQQAFGAEVDASGSSQPLPDPQL 457
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMP4_9PHAE7.150e-4676.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCR5_9PHAE1.220e-4580.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L1D0_9PHAE5.670e-4476.64Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JMC7_9PHAE7.310e-4475.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KIB0_9PHAE7.920e-4475.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KF18_9PHAE9.700e-4478.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JNJ1_9PHAE8.430e-4376.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K1G4_9PHAE1.800e-4276.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI90_9PHAE4.410e-4275.93Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JDW3_9PHAE5.940e-4275.93Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:1113109..1113432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size325
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.910878-CDS-P-fluviatile_contig15:1113108..11134321622815641.910878-CDS-P-fluviatile_contig15:1113108..1113432Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1113109..1113432 +
1693562649.0523658-CDS-P-fluviatile_contig15:1113108..11134321693562649.0523658-CDS-P-fluviatile_contig15:1113108..1113432Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1113109..1113432 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2442.1prot_P-fluviatile_contig15.2442.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 1113109..1113432 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2442.1

>prot_P-fluviatile_contig15.2442.1 ID=prot_P-fluviatile_contig15.2442.1|Name=mRNA_P-fluviatile_contig15.2442.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=108bp
PLRHGLEPGRTRKQTREMHGTEEAPGPGETPDPEEALLATVLETGGMEIV
QEYICNSLVKERWEEEQTRRMEEMSRRELQKVLGEEEQAFEAEVGGSGSS
QPQPDPQL
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mRNA from alignment at P-fluviatile_contig15:1113109..1113432+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2442.1 ID=mRNA_P-fluviatile_contig15.2442.1|Name=mRNA_P-fluviatile_contig15.2442.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=324bp|location=Sequence derived from alignment at P-fluviatile_contig15:1113109..1113432+ (Porterinema fluviatile SAG_2381)
CCGCTGCGCCATGGGCTTGAGCCTGGCCGCACGCGGAAGCAGACCCGGGA
GATGCATGGCACCGAGGAGGCACCGGGGCCCGGAGAAACACCTGACCCGG
AAGAGGCGCTGCTGGCGACCGTCCTTGAAACTGGCGGGATGGAGATTGTT
CAGGAGTACATCTGCAACTCGCTTGTGAAGGAACGGTGGGAGGAGGAGCA
GACGCGCCGGATGGAGGAGATGTCCAGGCGCGAGCTGCAGAAGGTGTTGG
GCGAGGAGGAGCAGGCATTCGAGGCCGAGGTCGGCGGCAGCGGGTCTTCG
CAACCTCAACCAGACCCGCAGCTA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:1113109..1113432+

>mRNA_P-fluviatile_contig15.2442.1 ID=mRNA_P-fluviatile_contig15.2442.1|Name=mRNA_P-fluviatile_contig15.2442.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=648bp|location=Sequence derived from alignment at P-fluviatile_contig15:1113109..1113432+ (Porterinema fluviatile SAG_2381)
CCGCTGCGCCATGGGCTTGAGCCTGGCCGCACGCGGAAGCAGACCCGGGA
GATGCATGGCACCGAGGAGGCACCGGGGCCCGGAGAAACACCTGACCCGG
AAGAGGCGCTGCTGGCGACCGTCCTTGAAACTGGCGGGATGGAGATTGTT
CAGGAGTACATCTGCAACTCGCTTGTGAAGGAACGGTGGGAGGAGGAGCA
GACGCGCCGGATGGAGGAGATGTCCAGGCGCGAGCTGCAGAAGGTGTTGG
GCGAGGAGGAGCAGGCATTCGAGGCCGAGGTCGGCGGCAGCGGGTCTTCG
CAACCTCAACCAGACCCGCAGCTACCGCTGCGCCATGGGCTTGAGCCTGG
CCGCACGCGGAAGCAGACCCGGGAGATGCATGGCACCGAGGAGGCACCGG
GGCCCGGAGAAACACCTGACCCGGAAGAGGCGCTGCTGGCGACCGTCCTT
GAAACTGGCGGGATGGAGATTGTTCAGGAGTACATCTGCAACTCGCTTGT
GAAGGAACGGTGGGAGGAGGAGCAGACGCGCCGGATGGAGGAGATGTCCA
GGCGCGAGCTGCAGAAGGTGTTGGGCGAGGAGGAGCAGGCATTCGAGGCC
GAGGTCGGCGGCAGCGGGTCTTCGCAACCTCAACCAGACCCGCAGCTA
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