mRNA_P-fluviatile_contig15.2433.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2433.1
Unique NamemRNA_P-fluviatile_contig15.2433.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:1047813..1049847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size608
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2433.1prot_P-fluviatile_contig15.2433.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 1047813..1048172 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.771084-CDS-P-fluviatile_contig15:1047812..10481721622815641.771084-CDS-P-fluviatile_contig15:1047812..1048172Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1047813..1048172 -
1693562648.2443357-CDS-P-fluviatile_contig15:1047812..10481721693562648.2443357-CDS-P-fluviatile_contig15:1047812..1048172Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 1047813..1048172 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.786419-UTR-P-fluviatile_contig15:1048172..10482981622815641.786419-UTR-P-fluviatile_contig15:1048172..1048298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1048173..1048298 -
1693562648.2530737-UTR-P-fluviatile_contig15:1048172..10482981693562648.2530737-UTR-P-fluviatile_contig15:1048172..1048298Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1048173..1048298 -
1622815641.805602-UTR-P-fluviatile_contig15:1049726..10498471622815641.805602-UTR-P-fluviatile_contig15:1049726..1049847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1049727..1049847 -
1693562648.268476-UTR-P-fluviatile_contig15:1049726..10498471693562648.268476-UTR-P-fluviatile_contig15:1049726..1049847Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 1049727..1049847 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2433.1

>prot_P-fluviatile_contig15.2433.1 ID=prot_P-fluviatile_contig15.2433.1|Name=mRNA_P-fluviatile_contig15.2433.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=120bp
MAAAVSTMENGVRLSSRVGHQQRQRHSASHGAAAAAATAPPPRLPSSSRA
APVLMSSFSSSSSPRASLAFGSSLMPSAAGLLPSAARVGGGSSAASSSTS
TRTRNSGGGGGLWASILSFG
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mRNA from alignment at P-fluviatile_contig15:1047813..1049847-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2433.1 ID=mRNA_P-fluviatile_contig15.2433.1|Name=mRNA_P-fluviatile_contig15.2433.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2035bp|location=Sequence derived from alignment at P-fluviatile_contig15:1047813..1049847- (Porterinema fluviatile SAG_2381)
CGCAATCAAAATTAACAACGGAGAGCATCAGCTGCAAGGAGAGGCAGGAC
TACAAGCTCGGAAGAGACATCACCGCGGGTATCCTCAGCTGCAAGGTTCA
ACCCGCGACGCTTACGCAGTGGTACGAGATATTGTTGACGTCGACAAGGA
CAAAGTTGTGTACGTTTTGAATGTCAGACACGCACCCGCAGACCCGAGCT
GAAGAGGCTAGAGTCAAATTCGGCGTTGCCGCGCGAGAAGCTGTCAACAG
CCCCTACGCTGCAATGAACGAGCCTACTTACTCTCTCAGATCTACTGAGA
GAGGCGCGTGCCAACGACGCTATCATTTGACCACGGCAGCAGAGCAGCTC
TTCTGTGAAAAGGGGCTACATTTTCTGCATGATGTGCCACATTCCTCTCT
CTATCATCGCGGAACGGATCTTGACCTCGCTCCAGAGCTTCACGAAGGAA
GATCATCGTCGACATGAATCATTTACGCGACGTAAGACAGCGCGCTGCTG
TGGTTGTCCTCGTGCGTGTATTCTCGTCCGAATTGCGCTTGCTGCGAACG
CGAGGGAGGAGGTAATGTTTGAACGTTCGGGCAGCCAAATCTCTCTCCTC
GCTCTCTCGCTCTCTCGTCGGCGCTGCCGCTCTCTTATCATCTCTTCAAA
ACATGATGAACGCAAGTAGCATACCGGATCTGACGTACGTGGGCAACAAC
ACCTGCCATTGGGCACGCGCCCACCCGGGAGCTGTGATTTGCTGTTTTGC
TCATCGACCTTTAACTTTACGTCTCATGGCGATTCAGGCCCTGACACAAT
GGCACAGTCTGTGTGTAGGTACTAGATTTTGTATGCGCATCAAAATCCCT
TACCCGCCCCACTCGCTCTTCTGTCGTCTGTCTTCTCGCTGAACTCACAC
GGCAGTATGTGCTTTCATACACGCGTGCTCGGAGAGATTGAGGGAAGTAC
ATGTATATAGGTATAAGCCCGGCTGTGCACACACCCGCCACCAACTCATC
CATCCTTTTTGGCTTGGCAAGTTGTCATCCCATACCCCCCCCCCGTTAGG
GCAACCAGTGAACCAGTAAGGCGCGAGACAGGGGGTGCGGTGTAATTTCA
GTTCCGAAAACAGAATAAAGATTACCCTCCCCCTCTCCTTATGACCTTGT
TGAGGCGCAAAGCTCTTCTCTCGCGGTTGATTTGCATCGTTCATGCCACG
ATATTACGCCAGATGTGGTTTCGGAATCTTGATCCATTTGCAAGTAGCCC
CCACCGTGTTTGTTTTGAATTGAACGAAAGCCGGAATCCGCAGGCGGATT
GACTGATTTTTGGACGGGCGGGGAACTTTTTTTTTCTTCCAAAACTAGTA
TGAAAATCAACCAGTGCGGTATCCCTAGATCGGCAAACAACCACCTGCGG
AGCCCAGCTCTCGAACGTTTTTAAATATTTGAACCCCGCCGCGTTCTGGT
TCATTGGACGAACGACTGATGAATGAGCTTCTTGACGTGTAACCAAAGCC
ACGGTTGTATATCCCCTCGTCCCGGCTGTATACCCCCTCGCTGCAACAGC
AGGAGGCGGAAGTCCGGCCGCGTCTGCCGCTGTGGACCGTCGTTCTGTTC
GCGCCGCGCCTCCGCCGGGGAAAGCATAAAAGACAGTAGGCTGCCCGGCG
TGTTGACCGAAACGGGAGAGGACACATGGCGGCCGCCGTTTCCACGATGG
AGAACGGCGTTCGCCTGAGCTCCCGCGTGGGTCATCAGCAGCGACAGCGG
CACTCGGCCTCCCACGGCGCCGCCGCCGCCGCCGCTACTGCTCCCCCCCC
CCGACTGCCGTCTTCCTCGAGGGCGGCACCGGTGCTGATGTCGTCGTTTT
CGTCTTCGTCGTCGCCGAGAGCGTCATTGGCTTTCGGCAGCAGCCTCATG
CCGTCAGCCGCGGGTCTCCTTCCGTCCGCCGCAAGGGTCGGCGGCGGGTC
TTCCGCTGCCTCGTCTTCGACTTCCACACGCACACGAAACAGCGGCGGCG
GCGGCGGCCTTTGGGCCTCGATCTTGTCGTTCGGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:1047813..1049847-

>mRNA_P-fluviatile_contig15.2433.1 ID=mRNA_P-fluviatile_contig15.2433.1|Name=mRNA_P-fluviatile_contig15.2433.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=720bp|location=Sequence derived from alignment at P-fluviatile_contig15:1047813..1049847- (Porterinema fluviatile SAG_2381)
ATGGCGGCCGCCGTTTCCACGATGGAGAACGGCGTTCGCCTGAGCTCCCG
CGTGGGTCATCAGCAGCGACAGCGGCACTCGGCCTCCCACGGCGCCGCCG
CCGCCGCCGCTACTGCTCCCCCCCCCCGACTGCCGTCTTCCTCGAGGGCG
GCACCGGTGCTGATGTCGTCGTTTTCGTCTTCGTCGTCGCCGAGAGCGTC
ATTGGCTTTCGGCAGCAGCCTCATGCCGTCAGCCGCGGGTCTCCTTCCGT
CCGCCGCAAGGGTCGGCGGCGGGTCTTCCGCTGCCTCGTCTTCGACTTCC
ACACGCACACGAAACAGCGGCGGCGGCGGCGGCCTTTGGGCCTCGATCTT
GTCGTTCGGAATGGCGGCCGCCGTTTCCACGATGGAGAACGGCGTTCGCC
TGAGCTCCCGCGTGGGTCATCAGCAGCGACAGCGGCACTCGGCCTCCCAC
GGCGCCGCCGCCGCCGCCGCTACTGCTCCCCCCCCCCGACTGCCGTCTTC
CTCGAGGGCGGCACCGGTGCTGATGTCGTCGTTTTCGTCTTCGTCGTCGC
CGAGAGCGTCATTGGCTTTCGGCAGCAGCCTCATGCCGTCAGCCGCGGGT
CTCCTTCCGTCCGCCGCAAGGGTCGGCGGCGGGTCTTCCGCTGCCTCGTC
TTCGACTTCCACACGCACACGAAACAGCGGCGGCGGCGGCGGCCTTTGGG
CCTCGATCTTGTCGTTCGGA
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