mRNA_P-fluviatile_contig15.2422.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2422.1
Unique NamemRNA_P-fluviatile_contig15.2422.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2422.1 vs. uniprot
Match: A0A6H5JYY5_9PHAE (Sm domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYY5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 8.270e-30
Identity = 60/73 (82.19%), Postives = 65/73 (89.04%), Query Frame = 3 
Query:  510 RNRSLSMVDVRQTNPDGSVKKMSVVLVQGRMIRYVHIPDEVDAISNLQNHMRIMDQQGYRRQMLKSKPAQALP 728
            RN +LSMVDVRQTNPDGSV+KM VVLVQG+MIRYVHIPD+VDAISNLQ HMR MDQQGYRR MLK K +QA P
Sbjct:   16 RNMNLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYRRNMLKPKTSQAPP 88
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BLAST of mRNA_P-fluviatile_contig15.2422.1 vs. uniprot
Match: D7G5S1_ECTSI (Putaive LSm10 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S1_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 4.710e-29
Identity = 63/85 (74.12%), Postives = 68/85 (80.00%), Query Frame = 3 
Query:  474 LAVQTLACVQLGRNRSLSMVDVRQTNPDGSVKKMSVVLVQGRMIRYVHIPDEVDAISNLQNHMRIMDQQGYRRQMLKSKPAQALP 728
            LA   L C + G   SLSMVDVRQTNPDGSV+KM VVLVQG+MIRYVHIPD+VDAISNLQ HMR MDQQGY R MLK K +QA P
Sbjct:   63 LAAYGLTCSRAGPAPSLSMVDVRQTNPDGSVRKMDVVLVQGKMIRYVHIPDKVDAISNLQKHMRTMDQQGYHRNMLKPKLSQAPP 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2422.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JYY5_9PHAE8.270e-3082.19Sm domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7G5S1_ECTSI4.710e-2974.12Putaive LSm10 protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:935136..937444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutaive LSm10 protein
Ec32 orthologEc-12_008900.1
Exons3
Model size1294
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2422.1prot_P-fluviatile_contig15.2422.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 935696..936917 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.5155904-UTR-P-fluviatile_contig15:935135..9356951622815650.5155904-UTR-P-fluviatile_contig15:935135..935695Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 935136..935695 -
1693562708.3550534-UTR-P-fluviatile_contig15:935135..9356951693562708.3550534-UTR-P-fluviatile_contig15:935135..935695Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 935136..935695 -
1622815650.5653312-UTR-P-fluviatile_contig15:936917..9374441622815650.5653312-UTR-P-fluviatile_contig15:936917..937444Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 936918..937444 -
1693562708.4055085-UTR-P-fluviatile_contig15:936917..9374441693562708.4055085-UTR-P-fluviatile_contig15:936917..937444Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 936918..937444 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.526137-CDS-P-fluviatile_contig15:935695..9357701622815650.526137-CDS-P-fluviatile_contig15:935695..935770Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 935696..935770 -
1693562708.3647091-CDS-P-fluviatile_contig15:935695..9357701693562708.3647091-CDS-P-fluviatile_contig15:935695..935770Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 935696..935770 -
1622815650.5373077-CDS-P-fluviatile_contig15:936049..9361511622815650.5373077-CDS-P-fluviatile_contig15:936049..936151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 936050..936151 -
1693562708.383337-CDS-P-fluviatile_contig15:936049..9361511693562708.383337-CDS-P-fluviatile_contig15:936049..936151Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 936050..936151 -
1622815650.5504177-CDS-P-fluviatile_contig15:936887..9369171622815650.5504177-CDS-P-fluviatile_contig15:936887..936917Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 936888..936917 -
1693562708.396632-CDS-P-fluviatile_contig15:936887..9369171693562708.396632-CDS-P-fluviatile_contig15:936887..936917Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 936888..936917 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2422.1

>prot_P-fluviatile_contig15.2422.1 ID=prot_P-fluviatile_contig15.2422.1|Name=mRNA_P-fluviatile_contig15.2422.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=69bp
MVDVRQTNPDGSVKKMSVVLVQGRMIRYVHIPDEVDAISNLQNHMRIMDQ
QGYRRQMLKSKPAQALPS*
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mRNA from alignment at P-fluviatile_contig15:935136..937444-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2422.1 ID=mRNA_P-fluviatile_contig15.2422.1|Name=mRNA_P-fluviatile_contig15.2422.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=2309bp|location=Sequence derived from alignment at P-fluviatile_contig15:935136..937444- (Porterinema fluviatile SAG_2381)
ATGCGCGGGAACAAGGTTGTGGTGGAAATGAAGAACGACATCGAGATATC
CGGGGTGCTAGAAGAGACTGATCGAAATATGAAGTGAGCGGTTACTGTTA
GTCCGGATGTGGGTGCAGGTGTTTGTGATTGTGATCGTGTCGGTGTCGGC
GGACGCCTGGGGCTTTTCAGTGCGAAGGGAGCAGCGGAAACACATTGCGT
AGGCTAATGCTGAGCGTAACCCGCACCGGCGAACGGCAACCTAAACTTCA
GGCTTTAGCGAGACACATGATGGCTGAGATTTGTATCATCTAACGCTATT
TCGTGGAGGAAATACCCCCACACACTTCGCAGTGTTGGCTTTTCGGGCAA
AACAGTGGTTTCTGGTTCTCATGTTGGGACATTGAACGCCTCGCAAACTC
AGCCCTGCTCTGGCTTTCGCGAAAATTATGGTTGAGTCTACCCCTCTTCC
GCGCGCGCGCCCTCCGCCTCTGACTGGCGGTACAAACCCTGGCGTGCGTT
CAACTTGGACGAAATCGAAGCTTGTCCATGGTGGACGTCCGTCAAACGAA
TCCAGATGTAAGTAAGCAAGCGCGTGAAATCGGTTGATGCCACCCATTCT
GGCCGTAACTAATGCATGGGTGGAGAAAATAAAGTTCGTCAGATTTTTTA
GTGGGGATTAGGGTTAGAGTTAGGGCCAGGGTTAGCGTCATATGCCACGA
ACCCTCCTACCATCTATTTCCTACTCAATCTTAATTTCTGAGTAGGCGGC
CTGATTCTGGAACCAACCTCGGCAAGCTTGGATGCCGGGTGTTTTTGTCT
CCAGCTGCCCTGTTCACCGCGATTTTGGTGGAGAAAATAACTCAATGTTT
TCCGTTTGAAACCCAGATTTCATCATAGATTTCTCCAGGAAGTTTTCTCG
TGGCCAAAATCCAAGGGGGCTCATCCGGACCACCGCATGTTAGGGGAAAC
CCTTTGGCCTGCGCACGGCAGTCAGCGGTTCATTGCGTCTTCGTTTTTGT
CTTCATTTTTTTTTTCTCGCCGAAGAGGAGAATCCCCGGAGTGCGGAGGG
AGCACCATGTCTCGGTTCTTTTTCCTTTTGGGGGGGGGGGTGGTCGCCTT
CTGTAGCATTTTTCGCCCCTAACTTCGTGCAGACGAGCGTTGGAGCATGT
AACCGGCGAGAATAGAAAAAACGCAACACGCCGCATTGGAGCTTCAAAGG
TCATGTAGATGACTGCGCCATTCGTTGCTGGTGCTGGTGCTGCTGGTGCT
GGTGAATCCGCCAACCCATTTTTATTTGTTCTCGTTTCGACAGGGCTCGG
TGAAGAAGATGAGCGTGGTGCTGGTTCAGGGTAGGATGATCCGGTACGTG
CACATTCCAGACGAGGTGGACGCCATCAGCAATCTCCAGAACCACGTGAG
CTCTCCTGTTTAGTCACCCCTGCGGCGAGATTCAAATACAAGGCTAAAAA
TTCGCAGCGAGGTTGGCGAGGCAGCCGGGTAACGTCCCCAGATGCATGTG
TCTGTTTCTCGCTCGTGTATATCATGCTTTGCGCTGATGATCTGCCTGCG
TTTGATGAGCTAATCCATTTCACGGGCTCCACGTCGTAGATGGAATAATG
TGCCCATATGGCTACAGACGCACCCACCGCTGTGCCCATTTGCCTTTTGT
CCCCGCAATGCCCGCCGCCCGCAGATGCGAATCATGGACCAGCAGGGGTA
TCGACGACAGATGTTAAAATCGAAGCCGGCCCAGGCGCTTCCGTCATGAG
GTCCGCTGCACCGGGACGGTCTTCTTATCAAAGTGTCAATATTGGAAATG
ACAGATTGTAAAGACGCCATTCGGCGTTTTTTCGTGCTTTACCCGGCTAC
AACTTCCGATTTTGCGCACCCATGAATTGGATTTTGAACTATTCTGGCTC
CAAGTCTGGATCTAGATTCGGCCTTTGTTTGGATGATGGACAGAGTTTTG
TACTTTTGATTGTGATGGGGTTGTTCTCCGGGATATGTGCAGAGTGTTGC
ATCGAAATCGGAAATGTTTCTTGTTGGAGTCGACTTTTCTCACGCAAGCT
GCGCAAGGTCTGATGCGATATCAGAGGAACTGATGGCGTGTGTTCCGCGT
AGATACTCTCGGGGGAAGGATCAAAGATGCAGGTTGTCCAAGCAGGAATG
CAGACCCAGTTAGTTCTGTATGCCCGTTACATTTCTCTATCCTCTCTTCA
CGCGATTAGCACTATACGGTGTAACAATACCCGTACCGCTCATGTACAGC
AACGGCGTAAGCGACGAAAAAAGTGGATACCAAGGACGCGTTTTTGACCT
ATCTTTCTT
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:935136..937444-

>mRNA_P-fluviatile_contig15.2422.1 ID=mRNA_P-fluviatile_contig15.2422.1|Name=mRNA_P-fluviatile_contig15.2422.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=414bp|location=Sequence derived from alignment at P-fluviatile_contig15:935136..937444- (Porterinema fluviatile SAG_2381)
ATGGTGGACGTCCGTCAAACGAATCCAGATATGGTGGACGTCCGTCAAAC
GAATCCAGATGGCTCGGTGAAGAAGATGAGCGTGGTGCTGGTTCAGGGTA
GGATGATCCGGTACGTGCACATTCCAGACGAGGTGGACGCCATCAGCAAT
CTCCAGAACCACGGCTCGGTGAAGAAGATGAGCGTGGTGCTGGTTCAGGG
TAGGATGATCCGGTACGTGCACATTCCAGACGAGGTGGACGCCATCAGCA
ATCTCCAGAACCACATGCGAATCATGGACCAGCAGGGGTATCGACGACAG
ATGTTAAAATCGAAGCCGGCCCAGGCGCTTCCGTCATGAATGCGAATCAT
GGACCAGCAGGGGTATCGACGACAGATGTTAAAATCGAAGCCGGCCCAGG
CGCTTCCGTCATGA
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