mRNA_P-fluviatile_contig15.2391.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2391.1
Unique NamemRNA_P-fluviatile_contig15.2391.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: D7FJ86_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJ86_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.230e-26
Identity = 50/73 (68.49%), Postives = 57/73 (78.08%), Query Frame = -1
Query:   10 REQPVCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLMLQKVQGFCRVLPVPGGGGG 228
            RE   CYICCERRADAV+MECGHGG+CF CAT LAD+PPH CPVCRK IQEV  L +++ F RV+ VP   GG
Sbjct:  776 REHSTCYICCERRADAVMMECGHGGVCFTCATTLADSPPHLCPVCRKVIQEVFKLHEIREFGRVVVVPPASGG 848          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A7S3ZTM6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZTM6_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 2.570e-13
Identity = 28/53 (52.83%), Postives = 37/53 (69.81%), Query Frame = -1
Query:   58 VCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLMLQK 216
            +CY+CC  R +AV+MECGHGG+CF C   LA   P  CP+CR PI  VL +++
Sbjct:  539 LCYVCCVSRKNAVIMECGHGGICFECGKSLASRHPRNCPICRAPISAVLRVER 591          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A7S0I1C8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I1C8_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 1.010e-12
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = -1
Query:   55 EQPVCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLMLQKV 225
            E+P C+ICC    DAV+MECGHGG+C  CATQ A   P  CP+CR     +L++ KV
Sbjct:   42 EEPTCWICCSGPCDAVLMECGHGGICMDCATQCAKKRPPLCPLCRA---RILVVVKV 95          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: R1BX35_EMIHU (RING-type domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BX35_EMIHU)

HSP 1 Score: 65.9 bits (159), Expect = 1.950e-11
Identity = 29/72 (40.28%), Postives = 43/72 (59.72%), Query Frame = -1
Query:   19 PQREQPVCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLMLQKVQGFCRVLPVPGG 234
            P   +  C+IC E   DAV++ECGHGG+C ACA ++       CP+CR+P+ +++ LQ   G    L +P G
Sbjct:   29 PDAVEDRCWICYEGPRDAVLLECGHGGICVACARRVFKKRGRLCPMCRQPVSQMVQLQLGDGHGSELEMPRG 100          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A7S2XWW7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWW7_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.060e-11
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = -1
Query:   61 REQPVCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLMLQ 228
            R +  C +C   R++AV++ECGH GLCF CA  LA   P QCP+CR+ I ++L ++
Sbjct:   28 RGETSCLVCWNARSNAVLLECGHSGLCFPCAQALAQRYPQQCPMCRQNIVQILRIE 83          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A7S3JUI3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JUI3_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 3.630e-11
Identity = 29/51 (56.86%), Postives = 36/51 (70.59%), Query Frame = -1
Query:   64 VCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLML 216
            +CYIC     DAV+MECGH G+CF+CA +LA   P  CP+CR+PI  VL L
Sbjct:  429 LCYICYVAPRDAVLMECGHAGVCFSCAQKLAVRHPRSCPICRQPISTVLKL 479          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A7S3EPQ4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EPQ4_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 5.950e-11
Identity = 24/52 (46.15%), Postives = 38/52 (73.08%), Query Frame = -1
Query:   61 VCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLMLQ 216
            +C IC E + DAV++ECGHGG+C+ACA +       +CP+CR+P+ +V+ +Q
Sbjct:   30 LCLICFEGQRDAVLLECGHGGICYACARRCFKKKRRECPMCRQPVTQVVHIQ 81          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A0M0J2X5_9EUKA (Putative e3 ubiquitin-protein ligase log2-like protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0J2X5_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.700e-10
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = -1
Query:   61 APQREQPVCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEVLMLQ 237
            A  ++  +C+IC     DAV++ECGHGGLCF CAT+       +CP+CR+PI +++ L+
Sbjct:  394 AGSQDGDLCFICYSGPRDAVLLECGHGGLCFGCATRCMQMRFQECPICRQPISQIVQLE 452          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A7S4F120_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4F120_CHRCT)

HSP 1 Score: 64.7 bits (156), Expect = 8.470e-10
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = -1
Query:   73 EQPVCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEV 225
            +   C+ICC   ADAV+++CGHGGLC+ACA +     PH CP+CR  I+ V
Sbjct:  241 DSSTCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVV 291          
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Match: A0A7S4BGL3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BGL3_CHRCT)

HSP 1 Score: 64.7 bits (156), Expect = 9.850e-10
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = -1
Query:   73 EQPVCYICCERRADAVVMECGHGGLCFACATQLADTPPHQCPVCRKPIQEV 225
            +   C+ICC   ADAV+++CGHGGLC+ACA +     PH CP+CR  I+ V
Sbjct:  291 DSSTCWICCLSTADAVLLDCGHGGLCYACAERCWRRSPHICPLCRASIKVV 341          
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJ86_ECTSI2.230e-2668.49RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A7S3ZTM6_9STRA2.570e-1352.83Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0I1C8_9EUKA1.010e-1252.63Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
R1BX35_EMIHU1.950e-1140.28RING-type domain-containing protein n=1 Tax=Emilia... [more]
A0A7S2XWW7_9STRA3.060e-1146.43Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3JUI3_9STRA3.630e-1156.86Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S3EPQ4_9EUKA5.950e-1146.15Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0J2X5_9EUKA1.700e-1044.07Putative e3 ubiquitin-protein ligase log2-like pro... [more]
A0A7S4F120_CHRCT8.470e-1050.98Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BGL3_CHRCT9.850e-1050.98Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:596183..596549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size368
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.4811585-CDS-P-fluviatile_contig15:596182..5965481622815641.4811585-CDS-P-fluviatile_contig15:596182..596548Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 596183..596548 +
1693562648.150428-CDS-P-fluviatile_contig15:596182..5965481693562648.150428-CDS-P-fluviatile_contig15:596182..596548Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 596183..596548 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2391.1prot_P-fluviatile_contig15.2391.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 596183..596548 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2391.1

>prot_P-fluviatile_contig15.2391.1 ID=prot_P-fluviatile_contig15.2391.1|Name=mRNA_P-fluviatile_contig15.2391.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=122bp
PAAAAAAAGNRQDSTEALHLLEHEDLLDWLPAHRALVRGGVGKLGRAGEA
QPPVPALHHHRVRPPLAADVAHGLFPLGRGQQEPRAATPGGDGRRSRLDK
SRRQHGSAPSQPPLEANASDRR
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mRNA from alignment at P-fluviatile_contig15:596183..596549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2391.1 ID=mRNA_P-fluviatile_contig15.2391.1|Name=mRNA_P-fluviatile_contig15.2391.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=367bp|location=Sequence derived from alignment at P-fluviatile_contig15:596183..596549+ (Porterinema fluviatile SAG_2381)
CCCGCTGCTGCCGCCGCCGCCGCCGGGAACAGGCAGGACTCTACAGAAGC CCTGCACCTTCTGGAGCATGAGGACCTCCTGGATTGGCTTCCGGCACACC GGGCACTGGTGCGGGGGGGTGTCGGCAAGCTGGGTCGCGCAGGCGAAGCA CAGCCCCCCGTGCCCGCACTCCATCACCACCGCGTCCGCCCTCCGCTCGC AGCAGATGTAGCACACGGGCTGTTCCCGCTGGGGCGCGGCCAGCAGGAGC CCCGTGCCGCAACTCCCGGCGGCGACGGTCGGCGCTCCCGCCTCGATAAA TCGCGACGCCAGCACGGCAGCGCCCCCTCCCAAcccCCCCTCGAGGCCAA CGCCAGCGATCGCCGAC
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:596183..596549+

>mRNA_P-fluviatile_contig15.2391.1 ID=mRNA_P-fluviatile_contig15.2391.1|Name=mRNA_P-fluviatile_contig15.2391.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=732bp|location=Sequence derived from alignment at P-fluviatile_contig15:596183..596549+ (Porterinema fluviatile SAG_2381)
CCCGCTGCTGCCGCCGCCGCCGCCGGGAACAGGCAGGACTCTACAGAAGC
CCTGCACCTTCTGGAGCATGAGGACCTCCTGGATTGGCTTCCGGCACACC
GGGCACTGGTGCGGGGGGGTGTCGGCAAGCTGGGTCGCGCAGGCGAAGCA
CAGCCCCCCGTGCCCGCACTCCATCACCACCGCGTCCGCCCTCCGCTCGC
AGCAGATGTAGCACACGGGCTGTTCCCGCTGGGGCGCGGCCAGCAGGAGC
CCCGTGCCGCAACTCCCGGCGGCGACGGTCGGCGCTCCCGCCTCGATAAA
TCGCGACGCCAGCACGGCAGCGCCCCCTCCCAAcccCCCCTCGAGGCCAA
CGCCAGCGATCGCCGACCCGCTGCTGCCGCCGCCGCCGCCGGGAACAGGC
AGGACTCTACAGAAGCCCTGCACCTTCTGGAGCATGAGGACCTCCTGGAT
TGGCTTCCGGCACACCGGGCACTGGTGCGGGGGGGTGTCGGCAAGCTGGG
TCGCGCAGGCGAAGCACAGCCCCCCGTGCCCGCACTCCATCACCACCGCG
TCCGCCCTCCGCTCGCAGCAGATGTAGCACACGGGCTGTTCCCGCTGGGG
CGCGGCCAGCAGGAGCCCCGTGCCGCAACTCCCGGCGGCGACGGTCGGCG
CTCCCGCCTCGATAAATCGCGACGCCAGCACGGCAGCGCCCCCTCCCAAc
ccCCCCTCGAGGCCAACGCCAGCGATCGCCGA
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