mRNA_P-fluviatile_contig15.2390.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2390.1
Unique NamemRNA_P-fluviatile_contig15.2390.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:591597..592904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size561
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2390.1prot_P-fluviatile_contig15.2390.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 591597..592829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.3654556-CDS-P-fluviatile_contig15:591596..5919801622815639.3654556-CDS-P-fluviatile_contig15:591596..591980Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 591597..591980 +
1693562641.585874-CDS-P-fluviatile_contig15:591596..5919801693562641.585874-CDS-P-fluviatile_contig15:591596..591980Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 591597..591980 +
1622815639.3786995-CDS-P-fluviatile_contig15:592727..5928291622815639.3786995-CDS-P-fluviatile_contig15:592727..592829Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 592728..592829 +
1693562641.5983841-CDS-P-fluviatile_contig15:592727..5928291693562641.5983841-CDS-P-fluviatile_contig15:592727..592829Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 592728..592829 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.3924134-UTR-P-fluviatile_contig15:592829..5929041622815639.3924134-UTR-P-fluviatile_contig15:592829..592904Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 592830..592904 +
1693562641.6082282-UTR-P-fluviatile_contig15:592829..5929041693562641.6082282-UTR-P-fluviatile_contig15:592829..592904Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 592830..592904 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2390.1

>prot_P-fluviatile_contig15.2390.1 ID=prot_P-fluviatile_contig15.2390.1|Name=mRNA_P-fluviatile_contig15.2390.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=162bp
MDSGGTGRGAWAKTNGRTVDYLDGGLHLGDFARNDDRRKTVHLGAVPNEQ
WYDRSSWPVDRGHVDHDGQNGRRFDDSERGGIGDELEAGDDYTRGADKYA
GGVRGHDLEGEEKNGTVMSLDLSDCSDEKLDTLLRRGRRRRSSESRVGLV
VGTSDAMLIGG*
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mRNA from alignment at P-fluviatile_contig15:591597..592904+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2390.1 ID=mRNA_P-fluviatile_contig15.2390.1|Name=mRNA_P-fluviatile_contig15.2390.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1308bp|location=Sequence derived from alignment at P-fluviatile_contig15:591597..592904+ (Porterinema fluviatile SAG_2381)
ATGGACAGCGGGGGAACGGGGCGGGGGGCGTGGGCCAAGACGAACGGGCG
GACCGTTGACTACTTGGATGGCGGGCTTCACCTCGGAGATTTTGCCCGAA
ACGATGATCGACGCAAGACCGTCCACCTGGGGGCGGTGCCCAACGAACAG
TGGTATGACAGGTCGTCCTGGCCGGTCGACAGGGGGCACGTGGATCATGA
TGGACAAAACGGGCGTCGCTTTGATGATTCGGAAAGGGGCGGTATAGGAG
ATGAGCTGGAGGCGGGCGACGATTACACACGCGGGGCGGACAAGTACGCC
GGAGGGGTCCGCGGGCACGACTTGGAAGGAGAAGAGAAGAACGGCACGGT
GATGTCGCTCGACCTGTCCGATTGCAGCGACGAGGTGAGAGGTCGGGACT
GCCGGCTCCTGTAGGAGGTGGAGTACCCCTCCTGAGGGCATTCGACAGCC
TACTAATGCTAGTTGGTGTACAGAGGAAGGGGCGACGATCAACGTCTTGC
TCCGTCGAAGTCACCGAAATCCGTGCCTCGATCTCGCACTGCTTCAAGGG
CACGACCCTCACCGATTTTTGATGCCCTCAAACACGGAGGGGGAAACCCG
GCCACGCTTCCCTTGTCCCAGCCAAGCCATTCCCCCCCCAGGCCGATCAG
TTGACTAACGCCGTTTCTTTCAGCGAATAAAAATGGGATTACTTGATCTC
GGAATACCTGGAAAGGCGATGGTAGCCACAAGCTGTCGCCGAAGCTTGTA
ACCTCTTGTGCACGAACTGCACGCAGCCATTGCTCGATGAGGCTCGATTT
TGGTGGTCAATGAGGCTCTCCTATGCTCATGCCGATATTTCGCCTGTAGC
CATTCCCAAAGCTCACCTGGCGGGCGGGCAATGGTAAGTAGGGCAGAGGC
GATTCGGAGCAAAGCCGGCGATGTATTCTCGGAAGAATTTGCGCAGATCC
CACAATGCAGGCCAGCATGGCCCGTACAACGTAGTCTCGAGAGAGGCTTC
AATCGTGCGCGATTGGCTCCCTCCAGGCATTGCGTGCATCTACCTCCTAC
CCCGTGACGCGCCCTCTGACATTCCTTGCGGCGCAACCGCCGGCATCGTC
GAACACGCACGCACGCACATCTGTTTTCCAGAAACTAGACACCCTGCTGC
GGAGAGGCCGTCGGCGGCGAAGCAGCGAAAGCCGGGTGGGATTGGTAGTC
GGCACGAGTGACGCCATGCTGATCGGGGGGTGACCAGACGCCATGAAGCC
GAGCATTGCCGTTTCACATGAAGTCTGAACTCGAGAGGTGGACTGCGCTT
GCAAGGAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:591597..592904+

>mRNA_P-fluviatile_contig15.2390.1 ID=mRNA_P-fluviatile_contig15.2390.1|Name=mRNA_P-fluviatile_contig15.2390.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=972bp|location=Sequence derived from alignment at P-fluviatile_contig15:591597..592904+ (Porterinema fluviatile SAG_2381)
ATGGACAGCGGGGGAACGGGGCGGGGGGCGTGGGCCAAGACGAACGGGCG
GACCGTTGACTACTTGGATGGCGGGCTTCACCTCGGAGATTTTGCCCGAA
ACGATGATCGACGCAAGACCGTCCACCTGGGGGCGGTGCCCAACGAACAG
TGGTATGACAGGTCGTCCTGGCCGGTCGACAGGGGGCACGTGGATCATGA
TGGACAAAACGGGCGTCGCTTTGATGATTCGGAAAGGGGCGGTATAGGAG
ATGAGCTGGAGGCGGGCGACGATTACACACGCGGGGCGGACAAGTACGCC
GGAGGGGTCCGCGGGCACGACTTGGAAGGAGAAGAGAAGAACGGCACGGT
GATGTCGCTCGACCTGTCCGATTGCAGCGACGAGATGGACAGCGGGGGAA
CGGGGCGGGGGGCGTGGGCCAAGACGAACGGGCGGACCGTTGACTACTTG
GATGGCGGGCTTCACCTCGGAGATTTTGCCCGAAACGATGATCGACGCAA
GACCGTCCACCTGGGGGCGGTGCCCAACGAACAGTGGTATGACAGGTCGT
CCTGGCCGGTCGACAGGGGGCACGTGGATCATGATGGACAAAACGGGCGT
CGCTTTGATGATTCGGAAAGGGGCGGTATAGGAGATGAGCTGGAGGCGGG
CGACGATTACACACGCGGGGCGGACAAGTACGCCGGAGGGGTCCGCGGGC
ACGACTTGGAAGGAGAAGAGAAGAACGGCACGGTGATGTCGCTCGACCTG
TCCGATTGCAGCGACGAGAAACTAGACACCCTGCTGCGGAGAGGCCGTCG
GCGGCGAAGCAGCGAAAGCCGGGTGGGATTGGTAGTCGGCACGAGTGACG
CCATGCTGATCGGGGGGTGAAAACTAGACACCCTGCTGCGGAGAGGCCGT
CGGCGGCGAAGCAGCGAAAGCCGGGTGGGATTGGTAGTCGGCACGAGTGA
CGCCATGCTGATCGGGGGGTGA
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