mRNA_P-fluviatile_contig15.2379.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2379.1
Unique NamemRNA_P-fluviatile_contig15.2379.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:385246..385842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-26_001750.2
Exons1
Model size598
Cds size570
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.428935-UTR-P-fluviatile_contig15:385245..3852721622815641.428935-UTR-P-fluviatile_contig15:385245..385272Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 385246..385272 +
1693562648.132261-UTR-P-fluviatile_contig15:385245..3852721693562648.132261-UTR-P-fluviatile_contig15:385245..385272Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 385246..385272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.4419217-CDS-P-fluviatile_contig15:385272..3858421622815641.4419217-CDS-P-fluviatile_contig15:385272..385842Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 385273..385842 +
1693562648.141894-CDS-P-fluviatile_contig15:385272..3858421693562648.141894-CDS-P-fluviatile_contig15:385272..385842Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 385273..385842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2379.1prot_P-fluviatile_contig15.2379.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 385273..385842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2379.1

>prot_P-fluviatile_contig15.2379.1 ID=prot_P-fluviatile_contig15.2379.1|Name=mRNA_P-fluviatile_contig15.2379.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=190bp
MRRQGRASPHLRGEGSGRGSGGPNWQQQRNQQGAGWSRGSPPDQFRQQQQ
QYGQPRDYGPGGGGYRGQHPGGRGFESGRQYPGSGRGRGGFDNRTGDSHR
HGHPGGGDRGGNGVFYSNLPPAFNGQPQHAFSAQLSDSEQFACDNRWSHP
DWGGRMPQQQQEHGFGFAAHGGSSGGNSWGNTGGGYGFDH
back to top

mRNA from alignment at P-fluviatile_contig15:385246..385842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2379.1 ID=mRNA_P-fluviatile_contig15.2379.1|Name=mRNA_P-fluviatile_contig15.2379.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=597bp|location=Sequence derived from alignment at P-fluviatile_contig15:385246..385842+ (Porterinema fluviatile SAG_2381)
GACAACTACGACGCCTTCGCCGACTACATGCGGAGACAGGGGAGAGCTTC
GCCTCATCTTAGGGGCGAAGGGTCTGGACGCGGTAGCGGAGGTCCCAACT
GGCAGCAGCAGCGCAATCAGCAAGGCGCGGGTTGGAGCCGAGGATCACCG
CCAGACCAGTTCAGACAACAGCAGCAGCAATACGGACAGCCGCGAGATTA
TGGCCCCGGGGGTGGAGGCTATCGTGGCCAGCACCCCGGGGGACGCGGAT
TCGAGAGCGGGCGACAATACCCTGGGAGCGGACGTGGCCGCGGCGGGTTC
GACAACCGAACGGGCGACAGCCATCGCCACGGACATCCGGGGGGTGGAGA
TCGCGGCGGCAACGGGGTTTTTTACTCTAATTTGCCGCCTGCATTCAACG
GTCAACCGCAGCACGCTTTTTCCGCACAGCTTTCGGATTCGGAACAGTTC
GCCTGTGACAACCGCTGGAGCCACCCTGACTGGGGGGGGCGGATGCCGCA
ACAGCAGCAGGAGCACGGATTCGGATTCGCAGCACACGGAGGGAGTTCTG
GCGGGAACTCCTGGGGCAACACCGGCGGAGGATACGGTTTCGACCAC
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig15:385246..385842+

>mRNA_P-fluviatile_contig15.2379.1 ID=mRNA_P-fluviatile_contig15.2379.1|Name=mRNA_P-fluviatile_contig15.2379.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1140bp|location=Sequence derived from alignment at P-fluviatile_contig15:385246..385842+ (Porterinema fluviatile SAG_2381)
ATGCGGAGACAGGGGAGAGCTTCGCCTCATCTTAGGGGCGAAGGGTCTGG
ACGCGGTAGCGGAGGTCCCAACTGGCAGCAGCAGCGCAATCAGCAAGGCG
CGGGTTGGAGCCGAGGATCACCGCCAGACCAGTTCAGACAACAGCAGCAG
CAATACGGACAGCCGCGAGATTATGGCCCCGGGGGTGGAGGCTATCGTGG
CCAGCACCCCGGGGGACGCGGATTCGAGAGCGGGCGACAATACCCTGGGA
GCGGACGTGGCCGCGGCGGGTTCGACAACCGAACGGGCGACAGCCATCGC
CACGGACATCCGGGGGGTGGAGATCGCGGCGGCAACGGGGTTTTTTACTC
TAATTTGCCGCCTGCATTCAACGGTCAACCGCAGCACGCTTTTTCCGCAC
AGCTTTCGGATTCGGAACAGTTCGCCTGTGACAACCGCTGGAGCCACCCT
GACTGGGGGGGGCGGATGCCGCAACAGCAGCAGGAGCACGGATTCGGATT
CGCAGCACACGGAGGGAGTTCTGGCGGGAACTCCTGGGGCAACACCGGCG
GAGGATACGGTTTCGACCACATGCGGAGACAGGGGAGAGCTTCGCCTCAT
CTTAGGGGCGAAGGGTCTGGACGCGGTAGCGGAGGTCCCAACTGGCAGCA
GCAGCGCAATCAGCAAGGCGCGGGTTGGAGCCGAGGATCACCGCCAGACC
AGTTCAGACAACAGCAGCAGCAATACGGACAGCCGCGAGATTATGGCCCC
GGGGGTGGAGGCTATCGTGGCCAGCACCCCGGGGGACGCGGATTCGAGAG
CGGGCGACAATACCCTGGGAGCGGACGTGGCCGCGGCGGGTTCGACAACC
GAACGGGCGACAGCCATCGCCACGGACATCCGGGGGGTGGAGATCGCGGC
GGCAACGGGGTTTTTTACTCTAATTTGCCGCCTGCATTCAACGGTCAACC
GCAGCACGCTTTTTCCGCACAGCTTTCGGATTCGGAACAGTTCGCCTGTG
ACAACCGCTGGAGCCACCCTGACTGGGGGGGGCGGATGCCGCAACAGCAG
CAGGAGCACGGATTCGGATTCGCAGCACACGGAGGGAGTTCTGGCGGGAA
CTCCTGGGGCAACACCGGCGGAGGATACGGTTTCGACCAC
back to top