mRNA_P-fluviatile_contig15.2376.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2376.1
Unique NamemRNA_P-fluviatile_contig15.2376.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Match: A0A6H5JXC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXC0_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 3.840e-17
Identity = 46/70 (65.71%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:    1 GVEKKLSLCALWDRLQHLSKMIAIETARLANPPITPGVALQGRRGILPAREARAFFFLWCQPVLPESKAC 210
            GVEKKLSLCALWDRLQHLSKMIAIETARLA PPITPGVA + +           FF    QPV  E  AC
Sbjct:  162 GVEKKLSLCALWDRLQHLSKMIAIETARLATPPITPGVAFRDKL-------VEEFF----QPVKQELLAC 220
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BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Match: A0A6H5JBV0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 7.300e-17
Identity = 45/70 (64.29%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 GVEKKLSLCALWDRLQHLSKMIAIETARLANPPITPGVALQGRRGILPAREARAFFFLWCQPVLPESKAC 210
            GVEKKLSLCALWDRLQHLSKMIAIETARL  PPITPGVA + +           FF    QPV  E  AC
Sbjct:  319 GVEKKLSLCALWDRLQHLSKMIAIETARLETPPITPGVAFRDK-------HVEEFF----QPVKQELLAC 377
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BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Match: A0A6H5KWM8_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWM8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 8.870e-16
Identity = 44/70 (62.86%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:    1 GVEKKLSLCALWDRLQHLSKMIAIETARLANPPITPGVALQGRRGILPAREARAFFFLWCQPVLPESKAC 210
            GVEKKLSLCALWDRLQH+SKMIAIETARLA P ITPGVA + +           FF    QPV  E  AC
Sbjct:  405 GVEKKLSLCALWDRLQHVSKMIAIETARLATPLITPGVAFRDK-------HVEEFF----QPVKQELLAC 463
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BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Match: A0A6H5KBY4_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBY4_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.170e-12
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    1 GVEKKLSLCALWDRLQHLSKMIAIETARLANPPITPGVA 117
            GVEKKLSLCALWDRLQ LSKMIAIETARLA PP+  GVA
Sbjct:  790 GVEKKLSLCALWDRLQRLSKMIAIETARLATPPLGAGVA 828
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BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Match: A0A6H5JIR6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR6_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.330e-11
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:    1 GVEKKLSLCALWDRLQHLSKMIAIETARLANPPITPGVALQ 123
            GVE KLSLCALWDRLQ LSKMIAIETAR A PP+  GVA +
Sbjct:  349 GVENKLSLCALWDRLQRLSKMIAIETARFATPPLGAGVAFR 389
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BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Match: A0A6H5K9T1_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T1_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.600e-8
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1 
Query:    1 GVEKKLSLCALWDRLQHLSKMIAIETAR 84
            GVEKKLSLCALWDRLQ LSKMIAIETAR
Sbjct: 1084 GVEKKLSLCALWDRLQRLSKMIAIETAR 1111
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BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Match: D7G4F0_ECTSI (MULE domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4F0_ECTSI)

HSP 1 Score: 49.7 bits (117), Expect = 3.320e-5
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query:    1 GVEKKLSLCALWDRLQHLSKMIAIE 75
            GV+KKLSLCALWDRLQ LSKMIAI+
Sbjct:  392 GVDKKLSLCALWDRLQRLSKMIAID 416
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JXC0_9PHAE3.840e-1765.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV0_9PHAE7.300e-1764.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWM8_9PHAE8.870e-1662.86MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KBY4_9PHAE1.170e-1287.18SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JIR6_9PHAE1.330e-1178.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9T1_9PHAE6.600e-896.43SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
D7G4F0_ECTSI3.320e-588.00MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:380211..380594 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815644.9444118-CDS-P-fluviatile_contig15:380210..3803401622815644.9444118-CDS-P-fluviatile_contig15:380210..380340Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 380211..380340 -
1693562667.8640158-CDS-P-fluviatile_contig15:380210..3803401693562667.8640158-CDS-P-fluviatile_contig15:380210..380340Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 380211..380340 -
1622815644.9541435-CDS-P-fluviatile_contig15:380511..3805941622815644.9541435-CDS-P-fluviatile_contig15:380511..380594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 380512..380594 -
1693562667.8737705-CDS-P-fluviatile_contig15:380511..3805941693562667.8737705-CDS-P-fluviatile_contig15:380511..380594Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 380512..380594 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2376.1prot_P-fluviatile_contig15.2376.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 380211..380594 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2376.1

>prot_P-fluviatile_contig15.2376.1 ID=prot_P-fluviatile_contig15.2376.1|Name=mRNA_P-fluviatile_contig15.2376.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=71bp
GVEKKLSLCALWDRLQHLSKMIAIETARLANPPITPGVALQGRRGILPAR
EARAFFFLWCQPVLPESKAC*
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mRNA from alignment at P-fluviatile_contig15:380211..380594-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2376.1 ID=mRNA_P-fluviatile_contig15.2376.1|Name=mRNA_P-fluviatile_contig15.2376.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=384bp|location=Sequence derived from alignment at P-fluviatile_contig15:380211..380594- (Porterinema fluviatile SAG_2381)
GGTGTCGAGAAGAAGCTTTCACTGTGCGCTCTTTGGGATCGCCTGCAACA
CCTGAGCAAGATGATTGCCATCGAGACAGCGAGGTGCGAGGTGACTTTGC
ATGTTACCGATCCCTAGAGGCTTTGCGTGCCCTAATGGGTATATAAACTA
GACGCTCAAGGATAATGATGGTAGTTGACGTTATACATGAACCTCTCCCG
TCGGCACATATCATACACCTTATTTCATGCAGCACTCCGATGCAATGCAT
GCAGGTTAGCGAACCCCCCAATCACCCCTGGGGTGGCGTTACAAGGACGT
CGAGGAATTCTTCCAGCCCGTGAAGCAAGAGCTTTTTTTTTCCTGTGGTG
CCAGCCAGTACTGCCAGAAAGTAAGGCGTGTTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:380211..380594-

>mRNA_P-fluviatile_contig15.2376.1 ID=mRNA_P-fluviatile_contig15.2376.1|Name=mRNA_P-fluviatile_contig15.2376.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=426bp|location=Sequence derived from alignment at P-fluviatile_contig15:380211..380594- (Porterinema fluviatile SAG_2381)
GGTGTCGAGAAGAAGCTTTCACTGTGCGCTCTTTGGGATCGCCTGCAACA
CCTGAGCAAGATGATTGCCATCGAGACAGCGAGGGTGTCGAGAAGAAGCT
TTCACTGTGCGCTCTTTGGGATCGCCTGCAACACCTGAGCAAGATGATTG
CCATCGAGACAGCGAGGTTAGCGAACCCCCCAATCACCCCTGGGGTGGCG
TTACAAGGACGTCGAGGAATTCTTCCAGCCCGTGAAGCAAGAGCTTTTTT
TTTCCTGTGGTGCCAGCCAGTACTGCCAGAAAGTAAGGCGTGTTAGGTTA
GCGAACCCCCCAATCACCCCTGGGGTGGCGTTACAAGGACGTCGAGGAAT
TCTTCCAGCCCGTGAAGCAAGAGCTTTTTTTTTCCTGTGGTGCCAGCCAG
TACTGCCAGAAAGTAAGGCGTGTTAG
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