mRNA_P-fluviatile_contig15.2361.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2361.1
Unique NamemRNA_P-fluviatile_contig15.2361.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2361.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:110223..111182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size166
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.3127673-CDS-P-fluviatile_contig15:110222..1103051622815639.3127673-CDS-P-fluviatile_contig15:110222..110305Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 110223..110305 +
1693562641.5500145-CDS-P-fluviatile_contig15:110222..1103051693562641.5500145-CDS-P-fluviatile_contig15:110222..110305Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 110223..110305 +
1622815639.3334212-CDS-P-fluviatile_contig15:111099..1111811622815639.3334212-CDS-P-fluviatile_contig15:111099..111181Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 111100..111181 +
1693562641.5671964-CDS-P-fluviatile_contig15:111099..1111811693562641.5671964-CDS-P-fluviatile_contig15:111099..111181Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 111100..111181 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2361.1prot_P-fluviatile_contig15.2361.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 110223..111181 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2361.1

>prot_P-fluviatile_contig15.2361.1 ID=prot_P-fluviatile_contig15.2361.1|Name=mRNA_P-fluviatile_contig15.2361.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
PASPSHRRHRDREQRHQRASAELLEGRRGPPPVRQRQRAFIRKMRWGMGC
LAVVV
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mRNA from alignment at P-fluviatile_contig15:110223..111182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2361.1 ID=mRNA_P-fluviatile_contig15.2361.1|Name=mRNA_P-fluviatile_contig15.2361.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=960bp|location=Sequence derived from alignment at P-fluviatile_contig15:110223..111182+ (Porterinema fluviatile SAG_2381)
CCGGCGTCCCCATCTCACCGGAGACATCGCGATCGAGAGCAGAGGCATCA
GAGAGCAAGTGCTGAACTTCTGGAAGGTCGGCGGTGAGTCTTTCGCTCGT
GATGAACGTACGCCCTTGCCGTCATGGCTTTGTCGTGGGCGGCGGCCGTG
GGCCAGCCGTTTGCTTCTGACCTGGACGTGGTTTCCGACGGGGGACGCGC
CCCCGCCTCCAGAAAAGGCCCCAAATGTGCTAGGATATGATATTAGATGA
CTTTCTGCGCTTCAGTTTTTATTTCCAAAGCGTCGGTAACGAGCCGTGGC
GATGGGGCCTGTGGGAGCGAACGCGGTCATATACGGGGGAAACCACCCCC
TCCGCTCTCCGCGCTCTTTTCCCGCCGCCTGGTGGTGACGTGTACGCCCC
TCCCCACACAGTTTGATATTTTGTGCTCACCGCCACCCCCCCTTGTGAAA
TATTGAGTTTTTGTTGGCGTACCCTCACCCCCGGGCTCATTCGGTCGAAA
AGCCAGCTGTTTTTGAAATTGCACGTGCGGCGCAACCTCCATTCCTGTTC
GTATCTCGCCGCCAAATTGTCGGATGAGGCTCATTTTTTGCAGGAAGATG
CGGACTGAGGGTGGGTCCTACGTACATTTTTCAAAAGTCGAACATCGAAC
ATCGAACAAGCGGGTAGTTAGATGTTCGACTTTTTTTTGTCCTTTGTATT
TTGCGAAAAAGCGTAAAGAAAAACCCGCACACACACGTTTTGGTCACGTT
GTTGGGTCCCAACAGCCTGTTGGGTCCCAACAGCCCGCAGGTGCATCGGT
AGTTGACAGTCCTGTTGATGATGCAGCTGTGTGTGGCGTGCACCACTCTC
ACACAGCTCCTCACACAACAATAGCAGCGGGCCTCCACCAGTACGCCAAC
GGCAGCGGGCCTTCATCAGAAAGATGCGATGGGGAATGGGCTGTCTGGCC
GTAGTTGTAG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:110223..111182+

>mRNA_P-fluviatile_contig15.2361.1 ID=mRNA_P-fluviatile_contig15.2361.1|Name=mRNA_P-fluviatile_contig15.2361.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig15:110223..111182+ (Porterinema fluviatile SAG_2381)
CCGGCGTCCCCATCTCACCGGAGACATCGCGATCGAGAGCAGAGGCATCA
GAGAGCAAGTGCTGAACTTCTGGAAGGTCGGCGCCGGCGTCCCCATCTCA
CCGGAGACATCGCGATCGAGAGCAGAGGCATCAGAGAGCAAGTGCTGAAC
TTCTGGAAGGTCGGCGCGGGCCTCCACCAGTACGCCAACGGCAGCGGGCC
TTCATCAGAAAGATGCGATGGGGAATGGGCTGTCTGGCCGTAGTTGTACG
GGCCTCCACCAGTACGCCAACGGCAGCGGGCCTTCATCAGAAAGATGCGA
TGGGGAATGGGCTGTCTGGCCGTAGTTGTA
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