mRNA_P-fluviatile_contig15.2359.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2359.1
Unique NamemRNA_P-fluviatile_contig15.2359.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2359.1 vs. uniprot
Match: A0A6H5J849_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J849_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 3.660e-30
Identity = 64/138 (46.38%), Postives = 92/138 (66.67%), Query Frame = 1 
Query:    1 WAAAAARVVKAFRATFANADNPCITESLFFWRFVTEADLRDLFTRVADVLMPNPFERNGVSGLLLEHSRRISTTMRRLRLEMHDPMGAAMVARGVESHRLFKDFVDILSARSVS-CKPFGTKRGGKQAAADSMFSLQE 411
            W+AAAARV+  FRAT A+ + P +TE   FWRF T   L +L+ RV +VL+PNPF+RNGVS +L E +   ++++  LR+E HDP+G AM  RGV + +LF+ FV +LSAR+ S   P   ++  K A  D +F++ E
Sbjct:  160 WSAAAARVLSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNASYITPPPPRKHLKVAGPDRLFTMAE 297
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BLAST of mRNA_P-fluviatile_contig15.2359.1 vs. uniprot
Match: A0A6H5KEH2_9PHAE (RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEH2_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 2.340e-28
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = 1 
Query:    1 WAAAAARVVKAFRATFANADNPCITESLFFWRFVTEADLRDLFTRVADVLMPNPFERNGVSGLLLEHSRRISTTMRRLRLEMHDPMGAAMVARGVESHRLFKDFVDILSARSVS 342
            W+AAAARV+  FRAT A+ + P +TE   FWRF T   L +L+ RV +VL+PNPF+RNGVS +L E +   ++++  LR+E HDP+G AM  RGV + +LF+ FV +LSAR+ S
Sbjct:  149 WSAAAARVLSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPNPFDRNGVSAILHETAYETTSSLGPLRMEWHDPLGEAMARRGVTAEKLFRKFVGVLSARNAS 262
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BLAST of mRNA_P-fluviatile_contig15.2359.1 vs. uniprot
Match: A0A6H5KZY5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY5_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 5.680e-23
Identity = 56/129 (43.41%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:    1 WAAAAARVVKAFRATFANADNPCITESLFFWRFVTEADLRDLFTRVADVLMPNPFERNGVSGLLLEHSRRISTTMRRLRLEMHDPMGAAMVARGVESHRLFKDFVDILSARSVS-CKPFGTKRGGKQAA 384
            W+AAAAR++  FRAT A+ + P +TE   FWRF T   L +L+ RV +VL+P PF+RNGVS  L   +   ++++  LR+E HD +  AM  RGV + + F+ FV +LSAR+ S   P   ++  K AA
Sbjct:  332 WSAAAARILSVFRATRADPERPYMTEQALFWRFATPVALIELYDRVVEVLLPTPFDRNGVSAKLHGIAYETTSSLGPLRMEWHDLLEEAMARRGVTAEKFFRKFVGVLSARNASYITPPAPRKHAKVAA 460
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BLAST of mRNA_P-fluviatile_contig15.2359.1 vs. uniprot
Match: A0A6H5J7F8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F8_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 1.390e-8
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:    1 WAAAAARVVKAFRATFANADNPCITESLFFWRFVTEADLRDLFTRVADVLMPNPFERNGVSGLLLEHSRRISTTM 225
            W++ AA VV AF A  A+ + P ITE   FW FVT   +  L+     VL+PN F+RNGVS +L E S R +  +
Sbjct:  119 WSSRAASVVSAFGAARAHPERPYITEQALFWCFVTPVQMTALYDCEGQVLLPNAFDRNGVSAILHEKSYRTNALL 193
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2359.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5J849_9PHAE3.660e-3046.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEH2_9PHAE2.340e-2850.88RNA-directed DNA polymerase n=1 Tax=Ectocarpus sp.... [more]
A0A6H5KZY5_9PHAE5.680e-2343.41Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J7F8_9PHAE1.390e-844.00Integrase catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:103092..103513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size423
Cds size420
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.2636867-CDS-P-fluviatile_contig15:103091..1035111622815641.2636867-CDS-P-fluviatile_contig15:103091..103511Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 103092..103511 +
1693562648.063126-CDS-P-fluviatile_contig15:103091..1035111693562648.063126-CDS-P-fluviatile_contig15:103091..103511Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 103092..103511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2359.1prot_P-fluviatile_contig15.2359.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 103092..103511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2359.1

>prot_P-fluviatile_contig15.2359.1 ID=prot_P-fluviatile_contig15.2359.1|Name=mRNA_P-fluviatile_contig15.2359.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=140bp
WAAAAARVVKAFRATFANADNPCITESLFFWRFVTEADLRDLFTRVADVL
MPNPFERNGVSGLLLEHSRRISTTMRRLRLEMHDPMGAAMVARGVESHRL
FKDFVDILSARSVSCKPFGTKRGGKQAAADSMFSLQELSE
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mRNA from alignment at P-fluviatile_contig15:103092..103513+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2359.1 ID=mRNA_P-fluviatile_contig15.2359.1|Name=mRNA_P-fluviatile_contig15.2359.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=422bp|location=Sequence derived from alignment at P-fluviatile_contig15:103092..103513+ (Porterinema fluviatile SAG_2381)
TGGGCCGCTGCAGCTGCTCGTGTGGTGAAGGCATTCCGCGCGACCTTCGC
AAACGCGGATAATCCCTGCATTACGGAATCTTTGTTCTTTTGGCGGTTTG
TTACAGAAGCTGACCTGCGTGATCTTTTCACTCGTGTGGCAGATGTACTC
ATGCCGAACCCGTTCGAGCGTAATGGAGTGTCCGGTCTGCTGTTGGAACA
CTCGAGACGCATTTCCACAACCATGCGCCGGCTTCGTCTCGAAATGCATG
ATCCCATGGGTGCAGCAATGGTAGCTAGGGGAGTGGAGTCGCACAGACTC
TTCAAGGATTTCGTCGACATTTTGTCCGCACGAAGCGTGTCGTGTAAGCC
TTTTGGGACGAAAAGGGGGGGTAAGCAGGCAGCCGCAGACAGCATGTTTT
CCCTGCAGGAACTTTCCGAGCT
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:103092..103513+

>mRNA_P-fluviatile_contig15.2359.1 ID=mRNA_P-fluviatile_contig15.2359.1|Name=mRNA_P-fluviatile_contig15.2359.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=840bp|location=Sequence derived from alignment at P-fluviatile_contig15:103092..103513+ (Porterinema fluviatile SAG_2381)
TGGGCCGCTGCAGCTGCTCGTGTGGTGAAGGCATTCCGCGCGACCTTCGC
AAACGCGGATAATCCCTGCATTACGGAATCTTTGTTCTTTTGGCGGTTTG
TTACAGAAGCTGACCTGCGTGATCTTTTCACTCGTGTGGCAGATGTACTC
ATGCCGAACCCGTTCGAGCGTAATGGAGTGTCCGGTCTGCTGTTGGAACA
CTCGAGACGCATTTCCACAACCATGCGCCGGCTTCGTCTCGAAATGCATG
ATCCCATGGGTGCAGCAATGGTAGCTAGGGGAGTGGAGTCGCACAGACTC
TTCAAGGATTTCGTCGACATTTTGTCCGCACGAAGCGTGTCGTGTAAGCC
TTTTGGGACGAAAAGGGGGGGTAAGCAGGCAGCCGCAGACAGCATGTTTT
CCCTGCAGGAACTTTCCGAGTGGGCCGCTGCAGCTGCTCGTGTGGTGAAG
GCATTCCGCGCGACCTTCGCAAACGCGGATAATCCCTGCATTACGGAATC
TTTGTTCTTTTGGCGGTTTGTTACAGAAGCTGACCTGCGTGATCTTTTCA
CTCGTGTGGCAGATGTACTCATGCCGAACCCGTTCGAGCGTAATGGAGTG
TCCGGTCTGCTGTTGGAACACTCGAGACGCATTTCCACAACCATGCGCCG
GCTTCGTCTCGAAATGCATGATCCCATGGGTGCAGCAATGGTAGCTAGGG
GAGTGGAGTCGCACAGACTCTTCAAGGATTTCGTCGACATTTTGTCCGCA
CGAAGCGTGTCGTGTAAGCCTTTTGGGACGAAAAGGGGGGGTAAGCAGGC
AGCCGCAGACAGCATGTTTTCCCTGCAGGAACTTTCCGAG
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