mRNA_P-fluviatile_contig15.2358.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2358.1
Unique NamemRNA_P-fluviatile_contig15.2358.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2358.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:96245..97212 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size733
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.2342036-CDS-P-fluviatile_contig15:96246..963481622815639.2342036-CDS-P-fluviatile_contig15:96246..96348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 96247..96348 -
1693562641.5320735-CDS-P-fluviatile_contig15:96246..963481693562641.5320735-CDS-P-fluviatile_contig15:96246..96348Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 96247..96348 -
1622815639.2462728-CDS-P-fluviatile_contig15:96585..972121622815639.2462728-CDS-P-fluviatile_contig15:96585..97212Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 96586..97212 -
1693562641.5412352-CDS-P-fluviatile_contig15:96585..972121693562641.5412352-CDS-P-fluviatile_contig15:96585..97212Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 96586..97212 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2358.1prot_P-fluviatile_contig15.2358.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 96247..97212 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2358.1

>prot_P-fluviatile_contig15.2358.1 ID=prot_P-fluviatile_contig15.2358.1|Name=mRNA_P-fluviatile_contig15.2358.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=243bp
PSPCITQDEQPPPLADADDESGDEYGSGDDDDLSNYEYKDSSGDSDESEA
LLAPCKEPMISVRDALGLDDPESDLSPLDRPQRSSMVKARHPLNSRERAA
CGGCNSSAAGAAGGSSSSASSAGSAQPVQTGPVTGRFRGLAAATPGHAAA
APSAEGQGSRATSRPCSVEITSAMDSEEVFDRVRQVASPGALQGLAGFLL
PHVAPNLFSASVQPASKRSSSVGEASERGHWLSIAAMYSSAFV
back to top

mRNA from alignment at P-fluviatile_contig15:96245..97212-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2358.1 ID=mRNA_P-fluviatile_contig15.2358.1|Name=mRNA_P-fluviatile_contig15.2358.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=968bp|location=Sequence derived from alignment at P-fluviatile_contig15:96245..97212- (Porterinema fluviatile SAG_2381)
CCATCTCCGTGCATCACACAGGACGAGCAGCCGCCGCCGTTGGCGGATGC
CGATGACGAAAGCGGCGACGAATACGGAAGCGGGGACGACGACGACTTGT
CCAACTACGAGTACAAAGACTCTAGCGGAGATTCTGACGAGTCCGAGGCC
CTGCTGGCCCCGTGCAAGGAGCCCATGATCTCCGTTCGAGATGCCCTGGG
GCTCGACGACCCAGAGTCGGACCTCTCCCCGCTGGACCGCCCTCAGCGAT
CCAGCATGGTAAAGGCTCGTCACCCGCTGAACTCCAGGGAGAGGGCTGCC
TGCGGCGGCTGCAACAGTTCCGCTGCTGGCGCCGCCGGCGGTAGCAGCAG
TTCGGCTTCTTCCGCTGGGTCGGCACAGCCCGTCCAGACTGGCCCGGTCA
CCGGTCGATTCCGCGGCTTAGCGGCAGCTACCCCGGGCCACGCCGCCGCC
GCCCCATCCGCCGAAGGTCAAGGATCAAGAGCCACCTCCCGCCCCTGCAG
CGTCGAGATCACCAGCGCCATGGACAGCGAGGAAGTCTTCGACCGGGTCC
GCCAAGTGGCTTCCCCGGGCGCGCTGCAGGGGCTCGCGGGCTTCCTGCTG
CCGCACGTGGCACCGAACTTGTTCTCGGTATGTAAAATTTCGTCGATGCT
TCCACCCTCTACGCACAAGTACCCCCTGATATTGTACTAAACGTGCCGAG
AGTGATGGCAGCCACGCGCATGCGCAAGCGGATAATTAGCATAGAGTAAA
GTACATACAAATGCGGACAACGCGGGAGCTTGCGTGGTGGGTCACTCATC
TGCCTTCGTACCACCTTGCTCCGTTTCTTTTCCTATGTTCACGTTGCCTG
CTCTTCACGCGTAGGCTTCGGTACAGCCTGCCAGCAAGAGGTCGTCGTCG
GTAGGCGAGGCGTCCGAACGCGGGCACTGGCTGAGTATCGCTGCCATGTA
CAGCTCTGCGTTCGTCGG
back to top

Coding sequence (CDS) from alignment at P-fluviatile_contig15:96245..97212-

>mRNA_P-fluviatile_contig15.2358.1 ID=mRNA_P-fluviatile_contig15.2358.1|Name=mRNA_P-fluviatile_contig15.2358.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=1458bp|location=Sequence derived from alignment at P-fluviatile_contig15:96245..97212- (Porterinema fluviatile SAG_2381)
CCATCTCCGTGCATCACACAGGACGAGCAGCCGCCGCCGTTGGCGGATGC
CGATGACGAAAGCGGCGACGAATACGGAAGCGGGGACGACGACGACTTGT
CCAACTACGAGTACAAAGACTCTAGCGGAGATTCTGACGAGTCCGAGGCC
CTGCTGGCCCCGTGCAAGGAGCCCATGATCTCCGTTCGAGATGCCCTGGG
GCTCGACGACCCAGAGTCGGACCTCTCCCCGCTGGACCGCCCTCAGCGAT
CCAGCATGGTAAAGGCTCGTCACCCGCTGAACTCCAGGGAGAGGGCTGCC
TGCGGCGGCTGCAACAGTTCCGCTGCTGGCGCCGCCGGCGGTAGCAGCAG
TTCGGCTTCTTCCGCTGGGTCGGCACAGCCCGTCCAGACTGGCCCGGTCA
CCGGTCGATTCCGCGGCTTAGCGGCAGCTACCCCGGGCCACGCCGCCGCC
GCCCCATCCGCCGAAGGTCAAGGATCAAGAGCCACCTCCCGCCCCTGCAG
CGTCGAGATCACCAGCGCCATGGACAGCGAGGAAGTCTTCGACCGGGTCC
GCCAAGTGGCTTCCCCGGGCGCGCTGCAGGGGCTCGCGGGCTTCCTGCTG
CCGCACGTGGCACCGAACTTGTTCTCGCCATCTCCGTGCATCACACAGGA
CGAGCAGCCGCCGCCGTTGGCGGATGCCGATGACGAAAGCGGCGACGAAT
ACGGAAGCGGGGACGACGACGACTTGTCCAACTACGAGTACAAAGACTCT
AGCGGAGATTCTGACGAGTCCGAGGCCCTGCTGGCCCCGTGCAAGGAGCC
CATGATCTCCGTTCGAGATGCCCTGGGGCTCGACGACCCAGAGTCGGACC
TCTCCCCGCTGGACCGCCCTCAGCGATCCAGCATGGTAAAGGCTCGTCAC
CCGCTGAACTCCAGGGAGAGGGCTGCCTGCGGCGGCTGCAACAGTTCCGC
TGCTGGCGCCGCCGGCGGTAGCAGCAGTTCGGCTTCTTCCGCTGGGTCGG
CACAGCCCGTCCAGACTGGCCCGGTCACCGGTCGATTCCGCGGCTTAGCG
GCAGCTACCCCGGGCCACGCCGCCGCCGCCCCATCCGCCGAAGGTCAAGG
ATCAAGAGCCACCTCCCGCCCCTGCAGCGTCGAGATCACCAGCGCCATGG
ACAGCGAGGAAGTCTTCGACCGGGTCCGCCAAGTGGCTTCCCCGGGCGCG
CTGCAGGGGCTCGCGGGCTTCCTGCTGCCGCACGTGGCACCGAACTTGTT
CTCGGCTTCGGTACAGCCTGCCAGCAAGAGGTCGTCGTCGGTAGGCGAGG
CGTCCGAACGCGGGCACTGGCTGAGTATCGCTGCCATGTACAGCTCTGCG
TTCGTCGCTTCGGTACAGCCTGCCAGCAAGAGGTCGTCGTCGGTAGGCGA
GGCGTCCGAACGCGGGCACTGGCTGAGTATCGCTGCCATGTACAGCTCTG
CGTTCGTC
back to top