mRNA_P-fluviatile_contig15.2355.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2355.1
Unique NamemRNA_P-fluviatile_contig15.2355.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:88156..89054 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size177
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2355.1prot_P-fluviatile_contig15.2355.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 88166..89054 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.174814-UTR-P-fluviatile_contig15:88155..881651622815639.174814-UTR-P-fluviatile_contig15:88155..88165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 88156..88165 -
1693562641.5033875-UTR-P-fluviatile_contig15:88155..881651693562641.5033875-UTR-P-fluviatile_contig15:88155..88165Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 88156..88165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815639.186398-CDS-P-fluviatile_contig15:88165..882371622815639.186398-CDS-P-fluviatile_contig15:88165..88237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 88166..88237 -
1693562641.5134869-CDS-P-fluviatile_contig15:88165..882371693562641.5134869-CDS-P-fluviatile_contig15:88165..88237Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 88166..88237 -
1622815639.1966705-CDS-P-fluviatile_contig15:88961..890541622815639.1966705-CDS-P-fluviatile_contig15:88961..89054Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 88962..89054 -
1693562641.5228193-CDS-P-fluviatile_contig15:88961..890541693562641.5228193-CDS-P-fluviatile_contig15:88961..89054Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 88962..89054 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2355.1

>prot_P-fluviatile_contig15.2355.1 ID=prot_P-fluviatile_contig15.2355.1|Name=mRNA_P-fluviatile_contig15.2355.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=55bp
RLHNIGSLAAARTTCTTVRRCHRRSTCLILKVSTPSRRSRLWPRGWRQLC
LVGI*
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mRNA from alignment at P-fluviatile_contig15:88156..89054-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2355.1 ID=mRNA_P-fluviatile_contig15.2355.1|Name=mRNA_P-fluviatile_contig15.2355.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=899bp|location=Sequence derived from alignment at P-fluviatile_contig15:88156..89054- (Porterinema fluviatile SAG_2381)
CGTTTACACAACATTGGCTCCCTCGCCGCGGCCAGGACAACGTGTACAAC
AGTTCGTAGGTGTCACCGACGGTCAACATGTCTGATTCTGAAGGTAACGC
TGGTGGGGTTGGTGGTGGACCCGGGAGCAGGGGGCTCCCGTAACCAGGGT
AACAGGGTTGCCCTGGGGGCCGGGGGGAAAGCGGTGTGCGTCTCGCGCGC
CACCGGCTCTCCTTCGGGAGTGGGGGAAGGGGGGGCAAGCGGTAAACATC
TCTCGAGTGTTACCGGATCTCCTTCGGGAGTGGGGGAGGGGGGGGAAAGC
GGTATACGTCTTGCGCACGTTGCTGGCTCTCCTTCGGGAGTGGGGGGAGG
CGGCGGCGTCTCGCCGGCAGGCAATGCCATCCCTCGGGGGAAGGGGGAGG
GAGTAGACGCTTCCGGTCAGGAAGGATCGGGGCGGGACTCACCGCACGGT
GATGATACGGAAAATTTTTCCGTTGCGCATGCACGTGGTGGGTATACCTC
TGCTGCTGCTGGTACCGCTTCCGTGGGGGGAAGTACGCGCCTGGGAAAAC
AAAATCAGAGGATGAGCGCGGATCGCGATATCGCTCGCTCTGCTGGGGGT
GTGGTTCGGGGAGGACTTGGGGGTATTCGGTCCCCTCGAAGCAGCCGTAG
CATGGCACTGGTTTCGCCTGTGACGGGCATGGGAGAGAAAAGCGGGTTGG
GGGGGGAAATTCCGCTGGTTACAACCACAAATAAAATTTCTCGCAATGCC
TCGTTTTCTGAACAAGGTTCTCGGTTTGGCTTTGTGCCTGCTTCGTCTCG
CCGTGTAACGTACACAGGTGTCCACGCCAAGCAGGAGGTCGAGGCTGTGG
CCTCGGGGTTGGAGGCAGCTGTGTCTCGTGGGCATTTGATGGCTGCCCA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:88156..89054-

>mRNA_P-fluviatile_contig15.2355.1 ID=mRNA_P-fluviatile_contig15.2355.1|Name=mRNA_P-fluviatile_contig15.2355.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=330bp|location=Sequence derived from alignment at P-fluviatile_contig15:88156..89054- (Porterinema fluviatile SAG_2381)
CGTTTACACAACATTGGCTCCCTCGCCGCGGCCAGGACAACGTGTACAAC
AGTTCGTAGGTGTCACCGACGGTCAACATGTCTGATTCTGAAGCGTTTAC
ACAACATTGGCTCCCTCGCCGCGGCCAGGACAACGTGTACAACAGTTCGT
AGGTGTCACCGACGGTCAACATGTCTGATTCTGAAGGTGTCCACGCCAAG
CAGGAGGTCGAGGCTGTGGCCTCGGGGTTGGAGGCAGCTGTGTCTCGTGG
GCATTTGAGTGTCCACGCCAAGCAGGAGGTCGAGGCTGTGGCCTCGGGGT
TGGAGGCAGCTGTGTCTCGTGGGCATTTGA
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