mRNA_P-fluviatile_contig15.2353.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2353.1
Unique NamemRNA_P-fluviatile_contig15.2353.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2353.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 8.430e-86
Identity = 143/150 (95.33%), Postives = 144/150 (96.00%), Query Frame = 1 
Query:    1 AFTEVSRIVTMGKQPTAVDRIDAVYDKLSGVFREPRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKVGGVLAMRGRWKEDPELVFDLIREAATDWRTVEQFERDRGSQRGAAEKAAPSSAARRKQKSTTGPLTCWTCGEAGHRS 450
            AFTEVSRIVTMGKQPTAVDRIDAVYDKLS  F  PRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKV G+LAMRGRWKEDPELVFDLIREAATDWRTVEQFERDRGSQRGAAEKAAPSSAARRKQKST GPLTCWTCGEAGHRS
Sbjct:  118 AFTEVSRIVTMGKQPTAVDRIDAVYDKLSVYFENPRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKVDGILAMRGRWKEDPELVFDLIREAATDWRTVEQFERDRGSQRGAAEKAAPSSAARRKQKSTPGPLTCWTCGEAGHRS 267
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BLAST of mRNA_P-fluviatile_contig15.2353.1 vs. uniprot
Match: A0A6H5JCK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.070e-20
Identity = 53/116 (45.69%), Postives = 72/116 (62.07%), Query Frame = 1 
Query:    1 AFTEVSRIVTMGKQPTAVDRIDAVYDKLSGVFREPRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKVGGVLAMRGRWKEDPELVFDLIREAATDWRTVEQFERDRGSQRG 348
            A   V+R+V MG + TAVDRIDAV  +L   +      +      GAFK G A V++K +VA   PPEF+ +V   L M+G WK++PELVF++ R+ A +WRTVE  +R RG  RG
Sbjct:  126 AAAAVTRMVAMGTKATAVDRIDAVRSRLEREYPSAERNSA-----GAFKNGSAAVMSKAVVAESAPPEFKVEVESKLDMQGSWKDNPELVFEIARDVAVEWRTVELADRQRGQSRG 236
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BLAST of mRNA_P-fluviatile_contig15.2353.1 vs. uniprot
Match: A0A6H5KQ00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ00_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 9.610e-15
Identity = 44/94 (46.81%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:    1 AFTEVSRIVTMGKQPTAVDRIDAVYDKLSGVFREPRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKVGGVLAMRGRWKEDPELVFDLI 282
            A   V+R+V +G   TAVD IDA+  +L   F  P ++ +F +  GA+K GPA VI+K + AGL PPEF  KV   L M+G WK++PELVF+ +
Sbjct:   65 AAAAVTRMVAIGAAATAVDHIDAIRSRLEHYFENPSAEHVFRDSAGAYKEGPAAVISKAVGAGLAPPEF--KVKSKLDMQG-WKDNPELVFESL 155
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BLAST of mRNA_P-fluviatile_contig15.2353.1 vs. uniprot
Match: A0A6H5JNT7_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNT7_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 1.910e-7
Identity = 33/108 (30.56%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:   13 VSRIVTMGKQPTAVDRIDAVYDKLSG-VFREPRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKVGGVLAMRGRWKEDPELVFDLIREAATDWRTVEQFERDR 333
            V+R  TM    + ++RI A++  L   +   P    L+   +  +    A V++K LV G++PPEF+  V   L ++G WK +P  V  ++ + ATDW+ +E+ + +R
Sbjct:  131 VTRAATMKPGASVLERIYAIHSALEYFLVVNPNVARLYRNADDEWLEESAHVVSKALVKGISPPEFKANVESSLELQGNWKTEPGGVLAVMVKEATDWKKLEKVDAER 238
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BLAST of mRNA_P-fluviatile_contig15.2353.1 vs. uniprot
Match: A0A6H5L1I2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1I2_9PHAE)

HSP 1 Score: 54.7 bits (130), Expect = 8.460e-6
Identity = 32/106 (30.19%), Postives = 55/106 (51.89%), Query Frame = 1 
Query:   13 VSRIVTMGKQPTAVDRIDAVYDKLSGVFRE-PRSKALFCEVNGAFKPGPAQVITKHLVAGLTPPEFRKKVGGVLAMRGRWKEDPELVFDLIREAATDWRTVEQFER 327
            V+R  +M    + ++R+ AV+  L     E P    L    +  +      V++K LV G++PPEF+  V   L ++G  K +PE V  ++ + ATDW+  E++ R
Sbjct:  131 VTRAASMKPSASVLERVYAVHSALECYLAENPNVAWLHRNADDEWLEESEHVVSKALVKGISPPEFKANVESSLGLQGNCKTEPERVIAVMVKEATDWKKTEKWAR 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE8.430e-8695.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCK9_9PHAE2.070e-2045.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ00_9PHAE9.610e-1546.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JNT7_9PHAE1.910e-730.56CCHC-type domain-containing protein (Fragment) n=1... [more]
A0A6H5L1I2_9PHAE8.460e-630.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:63322..63774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size453
Cds size423
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.1126914-UTR-P-fluviatile_contig15:63321..633511622815641.1126914-UTR-P-fluviatile_contig15:63321..63351Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 63322..63351 +
1693562647.9938593-UTR-P-fluviatile_contig15:63321..633511693562647.9938593-UTR-P-fluviatile_contig15:63321..63351Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 63322..63351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.1237984-CDS-P-fluviatile_contig15:63351..637741622815641.1237984-CDS-P-fluviatile_contig15:63351..63774Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 63352..63774 +
1693562648.012672-CDS-P-fluviatile_contig15:63351..637741693562648.012672-CDS-P-fluviatile_contig15:63351..63774Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 63352..63774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2353.1prot_P-fluviatile_contig15.2353.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 63352..63774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2353.1

>prot_P-fluviatile_contig15.2353.1 ID=prot_P-fluviatile_contig15.2353.1|Name=mRNA_P-fluviatile_contig15.2353.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=141bp
MGKQPTAVDRIDAVYDKLSGVFREPRSKALFCEVNGAFKPGPAQVITKHL
VAGLTPPEFRKKVGGVLAMRGRWKEDPELVFDLIREAATDWRTVEQFERD
RGSQRGAAEKAAPSSAARRKQKSTTGPLTCWTCGEAGHRSR
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mRNA from alignment at P-fluviatile_contig15:63322..63774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2353.1 ID=mRNA_P-fluviatile_contig15.2353.1|Name=mRNA_P-fluviatile_contig15.2353.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=453bp|location=Sequence derived from alignment at P-fluviatile_contig15:63322..63774+ (Porterinema fluviatile SAG_2381)
GCCTTTACTGAGGTATCGCGCATCGTGACCATGGGGAAGCAGCCGACCGC
AGTGGACCGCATTGACGCAGTGTATGACAAGCTATCGGGTGTATTTCGAG
AACCCCGATCTAAGGCACTGTTTTGCGAGGTGAATGGGGCGTTCAAACCG
GGCCCAGCACAGGTCATCACTAAACATCTGGTCGCGGGACTTACGCCTCC
GGAATTCCGCAAGAAAGTCGGCGGTGTTCTCGCTATGCGCGGGCGTTGGA
AGGAGGATCCGGAGCTCGTCTTCGATTTGATTCGTGAGGCGGCTACGGAT
TGGCGAACTGTGGAACAGTTTGAACGTGATCGTGGATCACAACGTGGAGC
CGCCGAGAAGGCGGCGCCGTCGTCGGCTGCACGTCGGAAGCAGAAGTCGA
CGACTGGTCCGTTGACGTGCTGGACGTGTGGCGAGGCCGGTCACCGGTCA
AGG
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:63322..63774+

>mRNA_P-fluviatile_contig15.2353.1 ID=mRNA_P-fluviatile_contig15.2353.1|Name=mRNA_P-fluviatile_contig15.2353.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=846bp|location=Sequence derived from alignment at P-fluviatile_contig15:63322..63774+ (Porterinema fluviatile SAG_2381)
ATGGGGAAGCAGCCGACCGCAGTGGACCGCATTGACGCAGTGTATGACAA
GCTATCGGGTGTATTTCGAGAACCCCGATCTAAGGCACTGTTTTGCGAGG
TGAATGGGGCGTTCAAACCGGGCCCAGCACAGGTCATCACTAAACATCTG
GTCGCGGGACTTACGCCTCCGGAATTCCGCAAGAAAGTCGGCGGTGTTCT
CGCTATGCGCGGGCGTTGGAAGGAGGATCCGGAGCTCGTCTTCGATTTGA
TTCGTGAGGCGGCTACGGATTGGCGAACTGTGGAACAGTTTGAACGTGAT
CGTGGATCACAACGTGGAGCCGCCGAGAAGGCGGCGCCGTCGTCGGCTGC
ACGTCGGAAGCAGAAGTCGACGACTGGTCCGTTGACGTGCTGGACGTGTG
GCGAGGCCGGTCACCGGTCAAGGATGGGGAAGCAGCCGACCGCAGTGGAC
CGCATTGACGCAGTGTATGACAAGCTATCGGGTGTATTTCGAGAACCCCG
ATCTAAGGCACTGTTTTGCGAGGTGAATGGGGCGTTCAAACCGGGCCCAG
CACAGGTCATCACTAAACATCTGGTCGCGGGACTTACGCCTCCGGAATTC
CGCAAGAAAGTCGGCGGTGTTCTCGCTATGCGCGGGCGTTGGAAGGAGGA
TCCGGAGCTCGTCTTCGATTTGATTCGTGAGGCGGCTACGGATTGGCGAA
CTGTGGAACAGTTTGAACGTGATCGTGGATCACAACGTGGAGCCGCCGAG
AAGGCGGCGCCGTCGTCGGCTGCACGTCGGAAGCAGAAGTCGACGACTGG
TCCGTTGACGTGCTGGACGTGTGGCGAGGCCGGTCACCGGTCAAGG
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