mRNA_P-fluviatile_contig15.2352.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2352.1
Unique NamemRNA_P-fluviatile_contig15.2352.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2352.1 vs. uniprot
Match: A0A6H5K991_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K991_9PHAE)

HSP 1 Score: 62.4 bits (150), Expect = 9.010e-8
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    4 DGSQEDGGMDPNPDIRTLRRRAKRYQEMAAKFESKGEMDI 123
            DGSQE GG+DPNP IRTLRRRAK YQEMAAKFESK  +++
Sbjct:  482 DGSQEGGGVDPNPYIRTLRRRAKGYQEMAAKFESKVGLEL 521
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K991_9PHAE9.010e-877.50Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:38434..39783 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size661
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2352.1prot_P-fluviatile_contig15.2352.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 38461..39638 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8578644-UTR-P-fluviatile_contig15:38433..384601622815642.8578644-UTR-P-fluviatile_contig15:38433..38460Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 38434..38460 +
1693562652.3265104-UTR-P-fluviatile_contig15:38433..384601693562652.3265104-UTR-P-fluviatile_contig15:38433..38460Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 38434..38460 +
1622815642.904098-UTR-P-fluviatile_contig15:39638..397831622815642.904098-UTR-P-fluviatile_contig15:39638..39783Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 39639..39783 +
1693562652.374158-UTR-P-fluviatile_contig15:39638..397831693562652.374158-UTR-P-fluviatile_contig15:39638..39783Porterinema fluviatile SAG_2381UTRP-fluviatile_contig15 39639..39783 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8722258-CDS-P-fluviatile_contig15:38460..385411622815642.8722258-CDS-P-fluviatile_contig15:38460..38541Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 38461..38541 +
1693562652.3405704-CDS-P-fluviatile_contig15:38460..385411693562652.3405704-CDS-P-fluviatile_contig15:38460..38541Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 38461..38541 +
1622815642.883452-CDS-P-fluviatile_contig15:38872..391001622815642.883452-CDS-P-fluviatile_contig15:38872..39100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 38873..39100 +
1693562652.3487046-CDS-P-fluviatile_contig15:38872..391001693562652.3487046-CDS-P-fluviatile_contig15:38872..39100Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 38873..39100 +
1622815642.8940835-CDS-P-fluviatile_contig15:39458..396381622815642.8940835-CDS-P-fluviatile_contig15:39458..39638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 39459..39638 +
1693562652.3585842-CDS-P-fluviatile_contig15:39458..396381693562652.3585842-CDS-P-fluviatile_contig15:39458..39638Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 39459..39638 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2352.1

>prot_P-fluviatile_contig15.2352.1 ID=prot_P-fluviatile_contig15.2352.1|Name=mRNA_P-fluviatile_contig15.2352.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=163bp
MDPNPDIRTLRRRAKRYQEMAAKFESKGEMDITAGTRFHTGGWSADGGWG
TVMRSNLDDECEIVSYDVFMDDGTRLETVPASAVEADVDHGRELKARGTS
QGKEDDDSDSKKDSHGLQTGGGERKMTNVSLAVAPARRYCLLSCGISRAH
GCRLALRLLPIW*
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mRNA from alignment at P-fluviatile_contig15:38434..39783+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2352.1 ID=mRNA_P-fluviatile_contig15.2352.1|Name=mRNA_P-fluviatile_contig15.2352.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=1350bp|location=Sequence derived from alignment at P-fluviatile_contig15:38434..39783+ (Porterinema fluviatile SAG_2381)
GAGGACGGTAGCCAGGAGGACGGAGGCATGGACCCGAACCCTGATATTCG
TACACTCCGGCGCAGGGCCAAAAGATATCAGGAAATGGCTGCCAAGTTCG
AGTCTAAGGTGGGGTTGGAGTTGTGAGGATATACGGGGTATTTCACGCTC
CATGGCATGAGGTGGACGAAAATCAGGATTTCTTACCTTCATTGAAGGTT
GAAGCAGAGGTCTCCTGCGCATATTGAGAGCACACGCTCCTCAGTATTTT
CCCCCTATGTTATGTGTAGGGCACGGTGCCTGCGCCCTTGGATGTGTCTG
TTCCGAAGCGATATTCTTTGACGTTTCGTTGCGCAATGCCGAGAGTGGAT
GAATGCTCGGTTAGCCGTCGAGTCGGCGGTGTATTGTGGGAAGTAAACGG
ACGACTCCAACCTCCTTTCCGCTGATCATTTGCATGCAGGGGGAAATGGA
CATCACGGCAGGCACTCGCTTCCACACTGGCGGTTGGTCGGCGGACGGGG
GGTGGGGCACAGTAATGCGAAGCAACCTAGACGACGAGTGTGAGATAGTG
TCGTACGATGTCTTTATGGACGATGGCACGCGACTGGAGACGGTACCCGC
CTCCGCGGTCGAGGCAGACGTAGACCACGGCAGAGAATTGAAGGCGCGGG
GAACCAGCCAAGGGAAGGTGAGCCGCGTGTAACGTTGATGAAGCGGGCAT
TTATCGGGGTGGGTGCGTTTGTAGTTCCTTACCCTAAGACTTACGGGATA
TTGGTGCGACTGTTTTGTCCGTTTCATCCAGTCTGATTGCAGGAGTTTTG
CAGGTGGCCACGGGTTAAACGTGATGATTCACGGGGCTGTCGGGATCGTA
CTCATCGTGACGTTTCCCCCCCTCCTAGTGTGTTGTGCCTTTTTCTTCAT
ACACGCGGTCAACCACAACTCAAAAAGCAGACAAAGAAGACGACCTGATG
ACCGAATACCAGCGTTTCCCGTGGTAGTGGCAGGGTTTTCACAATCGTGG
CACTGTCGTTGCGCCGTGAAAACAGGAGGATGACGACTCCGACAGCAAGA
AAGATTCACACGGGCTTCAGACCGGGGGTGGAGAGCGCAAGATGACAAAT
GTGAGCCTTGCCGTAGCTCCGGCGCGCAGGTATTGCCTCTTGTCGTGTGG
CATATCCCGGGCGCACGGGTGTCGTCTGGCATTGCGGTTGCTCCCGATAT
GGTAGTGGTGTCACAACTGGCAATCGTAACGTCCTACCTACCGTTATGTT
GTCTCCGTGCCGAGCTAGCAGGAGGACCACGACCCCGACACGGAGAAAGA
GTCAGACGGGCGGCAGAGCGGGGGTGGAGGGCCAGATATAAAAAACGTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:38434..39783+

>mRNA_P-fluviatile_contig15.2352.1 ID=mRNA_P-fluviatile_contig15.2352.1|Name=mRNA_P-fluviatile_contig15.2352.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=978bp|location=Sequence derived from alignment at P-fluviatile_contig15:38434..39783+ (Porterinema fluviatile SAG_2381)
ATGGACCCGAACCCTGATATTCGTACACTCCGGCGCAGGGCCAAAAGATA
TCAGGAAATGGCTGCCAAGTTCGAGTCTAAGATGGACCCGAACCCTGATA
TTCGTACACTCCGGCGCAGGGCCAAAAGATATCAGGAAATGGCTGCCAAG
TTCGAGTCTAAGGGGGAAATGGACATCACGGCAGGCACTCGCTTCCACAC
TGGCGGTTGGTCGGCGGACGGGGGGTGGGGCACAGTAATGCGAAGCAACC
TAGACGACGAGTGTGAGATAGTGTCGTACGATGTCTTTATGGACGATGGC
ACGCGACTGGAGACGGTACCCGCCTCCGCGGTCGAGGCAGACGTAGACCA
CGGCAGAGAATTGAAGGCGCGGGGAACCAGCCAAGGGAAGGGGGAAATGG
ACATCACGGCAGGCACTCGCTTCCACACTGGCGGTTGGTCGGCGGACGGG
GGGTGGGGCACAGTAATGCGAAGCAACCTAGACGACGAGTGTGAGATAGT
GTCGTACGATGTCTTTATGGACGATGGCACGCGACTGGAGACGGTACCCG
CCTCCGCGGTCGAGGCAGACGTAGACCACGGCAGAGAATTGAAGGCGCGG
GGAACCAGCCAAGGGAAGGAGGATGACGACTCCGACAGCAAGAAAGATTC
ACACGGGCTTCAGACCGGGGGTGGAGAGCGCAAGATGACAAATGTGAGCC
TTGCCGTAGCTCCGGCGCGCAGGTATTGCCTCTTGTCGTGTGGCATATCC
CGGGCGCACGGGTGTCGTCTGGCATTGCGGTTGCTCCCGATATGGTAGGA
GGATGACGACTCCGACAGCAAGAAAGATTCACACGGGCTTCAGACCGGGG
GTGGAGAGCGCAAGATGACAAATGTGAGCCTTGCCGTAGCTCCGGCGCGC
AGGTATTGCCTCTTGTCGTGTGGCATATCCCGGGCGCACGGGTGTCGTCT
GGCATTGCGGTTGCTCCCGATATGGTAG
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