mRNA_P-fluviatile_contig15.2351.1 (mRNA) Porterinema fluviatile SAG_2381

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-fluviatile_contig15.2351.1
Unique NamemRNA_P-fluviatile_contig15.2351.1
TypemRNA
OrganismPorterinema fluviatile SAG_2381 (Porterinema fluviatile SAG_2381)
Homology
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BLAST of mRNA_P-fluviatile_contig15.2351.1 vs. uniprot
Match: Q8QKW0_ESV1K (EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K)

HSP 1 Score: 114 bits (284), Expect = 1.050e-30
Identity = 58/77 (75.32%), Postives = 62/77 (80.52%), Query Frame = 1 
Query:   88 PIRFDGVQTSKIKRDEMTVRSSVALPGTLGAQYKGKVVDAKNDDVVQLDTYTIRENPNAKTTKHTTSRLRVEHTRER 318
            P    GVQTS+ KRDEMTVRSSV LPGTLGAQYKGKV D KNDD V+LDTYTI ENP    T H+TSRL+VEHTRER
Sbjct:   30 PFASTGVQTSRTKRDEMTVRSSVTLPGTLGAQYKGKVFDTKNDDSVRLDTYTIAENPKRNITMHSTSRLKVEHTRER 106
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BLAST of mRNA_P-fluviatile_contig15.2351.1 vs. uniprot
Match: B5LWF6_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWF6_9PHYC)

HSP 1 Score: 51.2 bits (121), Expect = 5.570e-6
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 1 
Query:  142 VRSSVALPGTLGAQYKGKVVDAK-NDDVVQLDTYTIRENPNAKTTKHTTSRLRVEHTRER 318
            ++S V+    LG +Y+GK+V+    D  + L++Y++R+NP A    HTT+R+ VEHTRE+
Sbjct:   57 LKSEVSATAKLGTEYQGKIVEKSIGDGGLYLESYSVRDNPQAGKKIHTTNRMTVEHTREK 116
The following BLAST results are available for this feature:
BLAST of mRNA_P-fluviatile_contig15.2351.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Q8QKW0_ESV1K1.050e-3075.32EsV-1-47 n=2 Tax=root TaxID=1 RepID=Q8QKW0_ESV1K[more]
B5LWF6_9PHYC5.570e-641.67Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-fluviatile_contig15contigP-fluviatile_contig15:26195..26515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Porterinema fluviatile SAG_23812021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size323
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815642.8211877-CDS-P-fluviatile_contig15:26194..265151622815642.8211877-CDS-P-fluviatile_contig15:26194..26515Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 26195..26515 +
1693562652.3150647-CDS-P-fluviatile_contig15:26194..265151693562652.3150647-CDS-P-fluviatile_contig15:26194..26515Porterinema fluviatile SAG_2381CDSP-fluviatile_contig15 26195..26515 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-fluviatile_contig15.2351.1prot_P-fluviatile_contig15.2351.1Porterinema fluviatile SAG_2381polypeptideP-fluviatile_contig15 26195..26515 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-fluviatile_contig15.2351.1

>prot_P-fluviatile_contig15.2351.1 ID=prot_P-fluviatile_contig15.2351.1|Name=mRNA_P-fluviatile_contig15.2351.1|organism=Porterinema fluviatile SAG_2381|type=polypeptide|length=107bp
AFRGPRDQLRLHPEAQPYQDSRRRLPAREPIRFDGVQTSKIKRDEMTVRS
SVALPGTLGAQYKGKVVDAKNDDVVQLDTYTIRENPNAKTTKHTTSRLRV
EHTRER*
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mRNA from alignment at P-fluviatile_contig15:26195..26515+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-fluviatile_contig15.2351.1 ID=mRNA_P-fluviatile_contig15.2351.1|Name=mRNA_P-fluviatile_contig15.2351.1|organism=Porterinema fluviatile SAG_2381|type=mRNA|length=321bp|location=Sequence derived from alignment at P-fluviatile_contig15:26195..26515+ (Porterinema fluviatile SAG_2381)
GCCTTCCGCGGTCCACGAGATCAACTCCGCCTTCACCCAGAGGCTCAGCC
CTATCAAGACTCTCGCCGCCGCCTCCCGGCCCGTGAACCCATTCGCTTCG
ACGGTGTGCAGACGTCGAAAATAAAGCGCGATGAAATGACTGTCCGATCG
TCGGTGGCTCTTCCGGGTACCCTCGGGGCTCAGTACAAGGGGAAGGTGGT
GGACGCCAAAAACGACGACGTGGTGCAGCTAGACACGTACACGATTCGCG
AGAACCCGAACGCAAAGACCACCAAGCACACGACATCCCGGCTGCGTGTC
GAGCACACGAGGGAACGCTGA
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Coding sequence (CDS) from alignment at P-fluviatile_contig15:26195..26515+

>mRNA_P-fluviatile_contig15.2351.1 ID=mRNA_P-fluviatile_contig15.2351.1|Name=mRNA_P-fluviatile_contig15.2351.1|organism=Porterinema fluviatile SAG_2381|type=CDS|length=642bp|location=Sequence derived from alignment at P-fluviatile_contig15:26195..26515+ (Porterinema fluviatile SAG_2381)
GCCTTCCGCGGTCCACGAGATCAACTCCGCCTTCACCCAGAGGCTCAGCC
CTATCAAGACTCTCGCCGCCGCCTCCCGGCCCGTGAACCCATTCGCTTCG
ACGGTGTGCAGACGTCGAAAATAAAGCGCGATGAAATGACTGTCCGATCG
TCGGTGGCTCTTCCGGGTACCCTCGGGGCTCAGTACAAGGGGAAGGTGGT
GGACGCCAAAAACGACGACGTGGTGCAGCTAGACACGTACACGATTCGCG
AGAACCCGAACGCAAAGACCACCAAGCACACGACATCCCGGCTGCGTGTC
GAGCACACGAGGGAACGCTGAGCCTTCCGCGGTCCACGAGATCAACTCCG
CCTTCACCCAGAGGCTCAGCCCTATCAAGACTCTCGCCGCCGCCTCCCGG
CCCGTGAACCCATTCGCTTCGACGGTGTGCAGACGTCGAAAATAAAGCGC
GATGAAATGACTGTCCGATCGTCGGTGGCTCTTCCGGGTACCCTCGGGGC
TCAGTACAAGGGGAAGGTGGTGGACGCCAAAAACGACGACGTGGTGCAGC
TAGACACGTACACGATTCGCGAGAACCCGAACGCAAAGACCACCAAGCAC
ACGACATCCCGGCTGCGTGTCGAGCACACGAGGGAACGCTGA
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